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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052790 ID=TCONS_00052790|Name=TCONS_00052790|organism=Clytia hemisphaerica|type=transcript|length=714bp GTTTAATTGGCTTAATTAGAAATTGATTTGGCTTATACAGTCTCATGGTT CCATTATCAATTAGTGATTTAATTGCACCAGTTTTAGGAATAGTAGAGTT TGGTACAACGAAAGGAGTACcgttttcttttataataccccgatttttta aagtatagtTTTCAAAGGTGGTGTGGACTTCGACTAGGTCAACTGATAAG TCCTTTGTCATGACTTGGTTTTGGTCAAAGGTTCCATTAAGCTTTGAAGA AGACTGGTTAATTTCACTTTTACAACAATCTGATTCACATGCCGAACTTT TTGTTATTACGTTGCCGTAACTTTCCACTAAAGGAGTACACAACAAATTG ACGTATTTACTCAATTCTTTCAAAGCGATCGATTCACAAATAACCTGGGG GAATCGAATAAGAAGGGACAAGAATCCGACCAGTAGAGGAATGGGCAAGA ATATGGACATTCTGATGTACGTCTGTGTTGTGTATGAATTCTCAGTGTAG TCAAGTGTCGTATTCCCATCTCCTGACGTGTAGTTTACTACTAAAAGCAA GGGTTAATGAATTTTATAATACAATTATATAATAGAATTATATAACTTAG CTCAGGCTCTACTTTTCTCATTTCtctattcttaacatgttcttatcgCG TTAAATTTATTTACTCGAATAGATTGAAAACTAGCATTTTCTTAATAAAG TCAAAAATCTGAGA Run BLAST on NCBI transcript from alignment at scaffold_220:38406..39957+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052790 ID=TCONS_00052790|Name=TCONS_00052790|organism=Clytia hemisphaerica|type=transcript|length=1552bp|location=Sequence derived from alignment at scaffold_220:38406..39957+ (Clytia hemisphaerica) GTTTAATTGGCTTAATTAGAAATTGATTTGGCTTATACAGTCTCATGGTT
CCATTATCAATTAGTGATTTAATTGCACCAGTTTTAGGAATAGTAGAGTT
TGGTACAACGAAAGGAGTACcgttttcttttataataccccgatttttta
aagtatagtTTTCAAAGGTGGTGTGGACTTCGACTAGGTCAACTGATAAG
TCCTTTGTCATGACTTGGTTTTGGTCAAAGGTTCCATTAAGCTTTGAAGA
AGACTGGTTAATTTCACTTTTACAACAATCTGATTCACATGCCGAACTTT
TTGTTATTACGTTGCCGTAACTTTCCACTAAAGGAGTACACAACAAATTG
ACGTATTTACTCAATTCTTTCAAAGCGATCGATTCACAAATAACCTGGGG
GTAGGTAATCCTTCTCTTCACCTTTACGTCCGCGCTAAGAGTAGTATTCC
TAGACGAATGGAACGAATTGAAACTTTCGCTAGAGGTTAATCGACGATTT
GGTGCTCTACTCAAGATAGCATGTTTTGCATCTGACGGGACAGTTAACAT
TTGTTGTCCCATTTTCGGTTtcatttcttgattttcaaatttgttcAATT
CGATCTCAATTTTCGTTTCTTTCGGTTGTTTTTTGATTGATGAGGTAAAA
TGCGGAACGGTAAGAGTATCTGGTGTTTGTTCAGATGTAGTAGGATTGCT
TTGCATTCTGCGAATTACAATTCTGTGCTCTTTTCGATTGCGCCGAAGCT
TCTCTACGAATGAAgtaaaaaaagtagaaatttgAATAACTGAAAGCTTC
CTAAGCTTCCTAGAAGTACCGCCACTTTTTCCAGACCCACTTAATTTCGT
AAGACCGTGAAGCTTAGTTTGACAAAACCTTAGAACTATCCTGACGATTT
TTAGTGATTCATAGAGTTTTCTGTtgacacacccctgtctcggtgGCCGA
GCGGGCATTTCTTAGCAATTTAGGATATGATGAAAACCATAGGATATGGA
TGGAGAATCCTATTCATTGTAATGGTTGGGgtttttaaatatctttgttC
AAACCATAACCTACTAaaaaattttagtaccatgACCTAATAAAAATTTT
TAGTAGGCCATGTTCAAACTTAAATTAAATTTATGAGTAATCTCACCGGG
GACGAAAATGACGAAATTTAGGCCGATTGGCAGGAGTCCCTGCTTCTCCA
GAGTATAGACTTTTAAAGAACATACCTTTCTTTCTCAGGAATCGAATAAG
AAGGGACAAGAATCCGACCAGTAGAGGAATGGGCAAGAATATGGACATTC
TGATGTACGTCTGTGTTGTGTATGAATTCTCAGTGTAGTCAAGTGTCGTA
TTCCCATCTCCTGACGTGTAGTTTACTACTAAAAGCAAGGGTTAATGAAT
TTTATAATACAATTATATAATAGAATTATATAACTTAGCTCAGGCTCTAC
TTTTCTCATTTCtctattcttaacatgttcttatcgCGTTAAATTTATTT
ACTCGAATAGATTGAAAACTAGCATTTTCTTAATAAAGTCAAAAATCTGA
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052790-exon-scaffold_220-1491911889:38406..38805 | TCONS_00052790-exon-scaffold_220-1491911889:38406..38805 | Clytia hemisphaerica | exon |
TCONS_00052790-exon-scaffold_220-1510915933:38406..38805 | TCONS_00052790-exon-scaffold_220-1510915933:38406..38805 | Clytia hemisphaerica | exon |
TCONS_00052790-exon-scaffold_220-1575043694:38406..38805 | TCONS_00052790-exon-scaffold_220-1575043694:38406..38805 | Clytia hemisphaerica | exon |
TCONS_00052790-exon-scaffold_220-1491911889:39644..39957 | TCONS_00052790-exon-scaffold_220-1491911889:39644..39957 | Clytia hemisphaerica | exon |
TCONS_00052790-exon-scaffold_220-1510915933:39644..39957 | TCONS_00052790-exon-scaffold_220-1510915933:39644..39957 | Clytia hemisphaerica | exon |
TCONS_00052790-exon-scaffold_220-1575043694:39644..39957 | TCONS_00052790-exon-scaffold_220-1575043694:39644..39957 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_220 | supercontig | scaffold_220:38406..39957 + |
Blast
The following BLAST results are available for this feature:
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