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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052810 ID=TCONS_00052810|Name=TCONS_00052810|organism=Clytia hemisphaerica|type=transcript|length=2997bpRun BLAST on NCBI protein sequence of TCONS_00052810-protein >TCONS_00052810-protein ID=TCONS_00052810-protein|Name=TCONS_00052810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp LFQVNNEDFKLFKNIVHIDASDNQLSLELFKTFPSLENLDLQVNNIKHIKRun BLAST on NCBI transcript from alignment at scaffold_220:312228..329008+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052810 ID=TCONS_00052810|Name=TCONS_00052810|organism=Clytia hemisphaerica|type=transcript|length=16781bp|location=Sequence derived from alignment at scaffold_220:312228..329008+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_220:312228..329008+ >TCONS_00052810 ID=TCONS_00052810|Name=TCONS_00052810|organism=Clytia hemisphaerica|type=CDS|length=33264bp|location=Sequence derived from alignment at scaffold_220:312228..329008+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052810 vs. Swiss-Prot (Human)
Match: XRRA1 (X-ray radiation resistance-associated protein 1 OS=Homo sapiens GN=XRRA1 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 9.478e-30 Identity = 77/163 (47.24%), Postives = 106/163 (65.03%), Query Frame = 1
Query: 22 DFKLFKNIVHIDASDNQLSLELFKTFPSLENLDLQVNNIKHIKAKNTDFIQLKRLDLSYNNLSHDAMLNLGRLRNVQELLLRGCSLKSLPPQLARGYQ-VSQSDAEEKRQRAEEKTRFPKLISLDLSENNLTDISTFASLAGLRRLRILNLSCNKISGVPHLR 507
DFK F ++++I+AS+N L LE F TFP+L+ LDL N IK I K DF L+ LDLS+N+L+ +A+ +LG L +++ LLL G L SLPP LA Q S + KR RFP L +L L +N L++ S FASLAGLRRL+ L+L N+I +P+L+
Sbjct: 114 DFKHFHSVIYINASENLLPLEAFHTFPALKELDLAFNGIKTIYVKYGDFKLLEFLDLSFNSLTVEAICDLGILPHLRVLLLTGNGLTSLPPNLAVAEQEASVTSLTSKRY----ILRFPALETLMLDDNRLSNPSCFASLAGLRRLKKLSLDENRIIRIPYLQ 272 The following BLAST results are available for this feature:
BLAST of TCONS_00052810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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