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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052829 ID=TCONS_00052829|Name=TCONS_00052829|organism=Clytia hemisphaerica|type=transcript|length=1621bp
cgcctaaagtaagtTTATCTTTCTAATGTTTCAAAAATTCTCGTTTCAGA
GTAACTAAACAGCAAtaatatattgaataaataaaatGGTACCTGAATGG
TGTTGTGATGTATGCGAGAATTGAAAGCAATCGAAAAATAGAGAAATGGT
GACTTGCTAAACGATATTTCATCTTGAGCTGATCGATTGGTAAGAAACAT
TCATTGTTTACTTTTTTACCTcgtatttttcatgttttgttaagttaagc
aatttccgccattatagaagcaaacgttcgatttgcaagGGATCGcttct
acagattcgaacgtttgcttccataatggtggaaattatGTAACTTTACA
AAACACGGAAAACCTTTAATTTATAGGGCAGAATTCGAAAAAGGTTCAAT
CTGGCTCAAATTTGCACACCAAATCCTTAGGAAACCTTGACAGGCTTCGA
ACAAAAGGAATTATGTGAACACTAAGTGGGTGAATTAAGAGAATGTAACA
CTTCGAAGTGAACTAACAAAATAGGTCGAAATGATGCTGGTCCCATAATA
AACAAATATTGATGAATTATACTTTAACATTGTCCTTGATTTAGAACCCT
ACTTTGGCGTTTACATTGTGTCCATTAAAAAATGGTTAGAGGATAACCTA
ATTTGTTACACGTTTTTCTATGtatgaacattcaaaatttttgaagcctt
ctaaTGACTGGGGACGACATGGAGTTTTTGCAagttcttatttgatttgg
ttggtcgttaaccagtaataaaacaattttgttatttttttaaagaacgc
gtcatttttattacttcaaatgaccaattattaaagtatcttataaaaac
tccatctcatctgaatgACTGTTATTAGCACGTactcattttcaccattt
tctgagtatttttgtccatttcatatgaaatcaggtgttttagagtctgc
aaagccataaaataaatattttggccgtcgaagccttatgttcttataaa
aaacgcagCTTTTTGCTCATGTCTAATTGTTACATAGTACTTTAGCCTGT
GatctaattttgaaatttttcgctaaaaaaaattacaattgatGTTACGC
TATTATTCATGTTATAAAAATCTGTATTATACAAAGTTTATAGaaataaa
tatacaaaaaattgaaggaaccaataaatacatttttcattttgaaattc
aatcaCGAGCCTCGTTTTCATTCAGTTTCGAGCATGCTCTAAAACGAGGT
TGGTCAGTTCAACGAACTCACATTTAGTTTCTGTTGGTAGTTTACCATCT
TTATTACGTAATGTTAAATCAGgattgtttttcaatatttctttcATGAC
CTCATCTTCAACACCAAGGGTTAAACACATGTGTAACGGTGTCTCTTCTT
GAATACCTAAAGGAAATATATTGTTAATAAATCAACACTGTTTTCTGATA
TATTTTTCCACCGACCAAGAGGCTACCAGAACGTGGAAGATACGAtgcta
tttttttttcaatcaagtacacgcttttttcttAAGGTTTTAAGCATGAG
GTTCTTTGAGCTGAGCGTGGGCATATGCctaaatttctattgttctataa
CAACAACAACTCCCCCCCCCC Run BLAST on NCBI transcript from alignment at scaffold_220:74499..76119- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052829 ID=TCONS_00052829|Name=TCONS_00052829|organism=Clytia hemisphaerica|type=transcript|length=1621bp|location=Sequence derived from alignment at scaffold_220:74499..76119- (Clytia hemisphaerica)
CGCCTAAAGTAAGTTTATCTTTCTAATGTTTCAAAAATTCTCGTTTCAGA
GTAACTAAACAGCAATAATATATTGAATAAATAAAATGGTACCTGAATGG
TGTTGTGATGTATGCGAGAATTGAAAGCAATCGAAAAATAGAGAAATGGT
GACTTGCTAAACGATATTTCATCTTGAGCTGATCGATTGGTAAGAAACAT
TCATTGTTTACTTTTTTACCTCGTATTTTTCATGTTTTGTTAAGTTAAGC
AATTTCCGCCATTATAGAAGCAAACGTTCGATTTGCAAGGGATCGCTTCT
ACAGATTCGAACGTTTGCTTCCATAATGGTGGAAATTATGTAACTTTACA
AAACACGGAAAACCTTTAATTTATAGGGCAGAATTCGAAAAAGGTTCAAT
CTGGCTCAAATTTGCACACCAAATCCTTAGGAAACCTTGACAGGCTTCGA
ACAAAAGGAATTATGTGAACACTAAGTGGGTGAATTAAGAGAATGTAACA
CTTCGAAGTGAACTAACAAAATAGGTCGAAATGATGCTGGTCCCATAATA
AACAAATATTGATGAATTATACTTTAACATTGTCCTTGATTTAGAACCCT
ACTTTGGCGTTTACATTGTGTCCATTAAAAAATGGTTAGAGGATAACCTA
ATTTGTTACACGTTTTTCTATGTATGAACATTCAAAATTTTTGAAGCCTT
CTAATGACTGGGGACGACATGGAGTTTTTGCAAGTTCTTATTTGATTTGG
TTGGTCGTTAACCAGTAATAAAACAATTTTGTTATTTTTTTAAAGAACGC
GTCATTTTTATTACTTCAAATGACCAATTATTAAAGTATCTTATAAAAAC
TCCATCTCATCTGAATGACTGTTATTAGCACGTACTCATTTTCACCATTT
TCTGAGTATTTTTGTCCATTTCATATGAAATCAGGTGTTTTAGAGTCTGC
AAAGCCATAAAATAAATATTTTGGCCGTCGAAGCCTTATGTTCTTATAAA
AAACGCAGCTTTTTGCTCATGTCTAATTGTTACATAGTACTTTAGCCTGT
GATCTAATTTTGAAATTTTTCGCTAAAAAAAATTACAATTGATGTTACGC
TATTATTCATGTTATAAAAATCTGTATTATACAAAGTTTATAGAAATAAA
TATACAAAAAATTGAAGGAACCAATAAATACATTTTTCATTTTGAAATTC
AATCACGAGCCTCGTTTTCATTCAGTTTCGAGCATGCTCTAAAACGAGGT
TGGTCAGTTCAACGAACTCACATTTAGTTTCTGTTGGTAGTTTACCATCT
TTATTACGTAATGTTAAATCAGGATTGTTTTTCAATATTTCTTTCATGAC
CTCATCTTCAACACCAAGGGTTAAACACATGTGTAACGGTGTCTCTTCTT
GAATACCTAAAGGAAATATATTGTTAATAAATCAACACTGTTTTCTGATA
TATTTTTCCACCGACCAAGAGGCTACCAGAACGTGGAAGATACGATGCTA
TTTTTTTTTCAATCAAGTACACGCTTTTTTCTTAAGGTTTTAAGCATGAG
GTTCTTTGAGCTGAGCGTGGGCATATGCCTAAATTTCTATTGTTCTATAA
CAACAACAACTCCCCCCCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052829-exon-scaffold_220-1575043694:74499..76119 | TCONS_00052829-exon-scaffold_220-1575043694:74499..76119 | Clytia hemisphaerica | exon |
| TCONS_00052829-exon-scaffold_220-1510915933:74499..76119 | TCONS_00052829-exon-scaffold_220-1510915933:74499..76119 | Clytia hemisphaerica | exon |
| TCONS_00052829-exon-scaffold_220-1491911889:74499..76119 | TCONS_00052829-exon-scaffold_220-1491911889:74499..76119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:74499..76119 - |
Blast
The following BLAST results are available for this feature:
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