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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052896 ID=TCONS_00052896|Name=TCONS_00052896|organism=Clytia hemisphaerica|type=transcript|length=1689bp
AAAAATGGCAACTATCCCGTTTGACCCAACCATCGTTCTTGGTAACCTTG
TCAATCCTCGTAAATTTGACGTTTTGGAACAGATTGGGACACGCCAGACG
GAAATCGCTGCAAAGCAGCAAGAGTTGAACAGCATCTTGGCTGCTAAAAA
CAGTCTTGATATGACCAAGCAAGAGATTCATTCCATGGGTGTGGCAATGG
ATGAAAGCCTTGATGAAATAACGGAAAAAATGAATATTGAAATCAAGGCA
ACAATCAAGGATTATGCAGAAACACAAATAAAAAACCTGCCTATTATTGC
TAAATTGAAGTCGGGTATCGCTAATATTGCTGATCATGTCGAATCACCGC
TTGACTACAATTTGTCcttattgaaaaaagatttaccaATCAGTTCTAAT
ACAATCAAGATGAACTCCCAGTATTTCACTTTCTCTCAAAACAAGCAAAG
TAGCAGAGCAACTATTTCTCAAATGAAGGCTTTTGCTGGTGGTGAAGTAT
CTTTTTTTGGTGATCATATCAGTTCCAAGGTGTCTAGTGCTGTTCAAAGT
CAGATgacaaaacaaattcaaaagcaTGATACAAGTGGCACGTTGGTTAT
CACTGCAACTTGTACTCACGCAAACGCCTCCATATTTGCTCCACTTGTCC
TTGATGTTGACAAAGCTATCAGTTGTTGGAATGATTATTTCCCTGAAGAC
AAATTGAATCCTAGGAGTAAAAGTAAGATGTGTCAATTAGTCATGCAGAA
CGAGGACAACAACAATTCAATGCATTTGGTATCAGGCGCTACTTATGGTT
CCTGTTTTGTAGGTATGGTACATCATTTGCGGGAGACATCAACCCAGAAT
AGTGAGAGTATGATGTCATCTGCCGAATCTATGACAGCCAGCTTCGATAT
TGCTGGTTGGTTTTCTCACTACTCTGGTGGCTTTGGAGTCGATTCATCCT
TTTCAAGAGATTTGAAATCTCTCTTGAGCACCCAAGTGGTAACATCGCAC
GTCAGTCTTATCTGCGAAGGATGCATTCCAACCATTGCAAGTAACAAAGT
GGCACTTGGTGTTAAAACGTTTGCTCAGTTCGATCCAGCAGCTACTATGG
AGAATTTGGCTACAATGCATAATTCAAACAACCAAGCTCAGCAGACCGTC
GCCAGCGCTGCCAATATAGCAAGACAGGGGAAAACGGTTGCTACCATAAG
GGAAAATGAAGTCAAAAGCACAATGTCTGCATTGAGCACGATTGATNCAA
CCAAGCTCAACAGACCGTCGCCAGCGCTGCCAATATAGCAAGACAGGGGA
AAACGGTTGCTACCATAAGGGAAAATGAAGTCAAAAGCACAATGTCCGCA
TTGAGCACGATTGACGGTGAAAAGGATAGTGTGCTGAATATCAATTCTCT
TGTAGCTGCTCTGGAAGATTACGTCACTCAAGCCAAGACAACAAGTGTAG
GTGTACctatcaatttctttttaaagaatattaCCAAAGCTGATTTGGCC
AATATGTGGGTTAACAAATATGTTTCCAAAGTGAAAACGACTGATGACAA
AGCGGATGGCCCACCACCATCAACAGAACCTGCAACAACAGAGTAAGTGA
ACTGAAAATAATGCTGTAGTCCAATAATTGTATTTAAAGATTGTTGCTAG
AGTTCCTAGTTTTATCTAGGTACTCTGCCAATATCTTTA Run BLAST on NCBI protein sequence of TCONS_00052896-protein >TCONS_00052896-protein ID=TCONS_00052896-protein|Name=TCONS_00052896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
KMATIPFDPTIVLGNLVNPRKFDVLEQIGTRQTEIAAKQQELNSILAAKN
SLDMTKQEIHSMGVAMDESLDEITEKMNIEIKATIKDYAETQIKNLPIIA
KLKSGIANIADHVESPLDYNLSLLKKDLPISSNTIKMNSQYFTFSQNKQS
SRATISQMKAFAGGEVSFFGDHISSKVSSAVQSQMTKQIQKHDTSGTLVI
TATCTHANASIFAPLVLDVDKAISCWNDYFPEDKLNPRSKSKMCQLVMQN
EDNNNSMHLVSGATYGSCFVGMVHHLRETSTQNSESMMSSAESMTASFDI
AGWFSHYSGGFGVDSSFSRDLKSLLSTQVVTSHVSLICEGCIPTIASNKV
ALGVKTFAQFDPAATMENLATMHNSNNQAQQTVASAANIARQGKTVATIR
ENEVKSTMSALSTIDXTKLNRPSPALPI Run BLAST on NCBI transcript from alignment at scaffold_222:6318..9044+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052896 ID=TCONS_00052896|Name=TCONS_00052896|organism=Clytia hemisphaerica|type=transcript|length=2727bp|location=Sequence derived from alignment at scaffold_222:6318..9044+ (Clytia hemisphaerica)
AAAAATGGCAACTATCCCGTTTGACCCAACCATCGTTCTTGGTAACCTTG
TCAATCCTCGTAAATTTGACGTTTTGGAACAGATTGGGACACGCCAGACG
GAAATCGCTGCAAAGCAGCAAGAGTTGAACAGCATCTTGGCTGCTAAAAA
CAGTCTTGATATGACCAAGCAAGAGATTCATTCCATGGGTGTGGCAATGG
ATGAAAGCCTTGATGAAATAACGGAAAAAATGAATATTGAAATCAAGGCA
ACAATCAAGGATTATGCAGAAACACAAATAAAAAACCTGCCTATTATTGC
TAAATTGAAGTCGGGTATCGCTAATATTGCTGATCATGTCGAATCACCGC
TTGACTACAATTTGTCcttattgaaaaaagatttaccaATCAGTTCTAAT
ACAATCAAGATGAACTCCCAGTATTTCACTTTCTCTCAAAACAAGCAAAG
TAGCAGAGCAACTATTTCTCAAATGAAGGCTTTTGCTGGTGGTGAAGTAT
CTTTTTTTGGTGATCATATCAGTTCCAAGGTGTCTAGTGCTGTTCAAAGT
CAGATgacaaaacaaattcaaaagcaTGATACAAGTGGCACGTTGGTTAT
CACTGCAACTTGTACTCACGCAAACGCCTCCATATTTGCTCCACTTGTCC
TTGATGTTGACAAAGCTATCAGTTGTTGGAATGATTATTTCCCTGAAGAC
AAATTGAATCCTAGGAGTAAAAGTAAGATGTGTCAATTAGTCATGCAGAA
CGAGGACAACAACAATTCAATGCATTTGGTATCAGGCGCTACTTATGGTT
CCTGTTTTGTAGGTACTTGATATATTtgtatattattttgatgatacTGT
AGTGTCTTTTTAAATGGGAAAAAATCTTCGTGACTTTTTGGGTTATTTCA
CGGTGAGAAGctaaaatatttcaatgatTCATTTTTAAGATTCTAGAACT
GTATTtcatttaaagaactttttacgGTGAATTCACCCTGAAAGTCActg
tgatttttctttattttcctgTCTTAAAGTGGAATTCTAAGTACACGAAT
TCCTGGAAATATATACGGAGCATATACCTATATGTCCCCATAGATAATCA
TATATACCCCTAAACTCTTATGTTATTTTGATGATAGTGTCTTTTTACGG
TGAGAAGctaaaatatttcaatgattcatttttaagattttagagCTGTA
TTTGATTTAGAGAACTTTTTACCGTGAATTCAGCCTGAAAGTCACTGtga
ttttacccccactgttgaggatattgatttttcgaagtattgaaccccct
ggatatccactcttaaaaatgtgctcaaccccctggatgtcCTCtaataa
agatgcttacccctggatatcgtattttttacttgaaaagacactttgct
gctcccttgtagatatttaacctcCTGGATATTCGGACTATTTGTGGAAA
AGCGTTCATAACGTTTGTTATCTCAGATTGGTGGAGAGCCTATTGAAATG
AAGTTATCATCGATTTCCGGGGGTTATTTAGAGTTgtcgtcaacatgaaa
aatatgagtaATCTTATTGGTTAAAAAGGTGTACATAAATACTGTATTTT
ATATTAtaccgtacaaatacaagatATCCCATATTTTGTACTCGGTACCG
TGCTGTAACTGGGCTATAATTATTTGGAATAGTCAAATTTGAGAACTTTA
ACTgtagaattcttttttttttgtgctgAGAAAAACTTCGAAATTTTGTT
ATTACTAAAGATATTGTTTTCATGTCATCTTTCAATTCTTCGACGAAATC
GTGTAAAATGGATTTTGTTCGATAGAGATAATTCTGTCTTTCATTTGTAG
GTATGGTACATCATTTGCGGGAGACATCAACCCAGAATAGTGAGAGTATG
ATGTCATCTGCCGAATCTATGACAGCCAGCTTCGATATTGCTGGTTGGTT
TTCTCACTACTCTGGTGGCTTTGGAGTCGATTCATCCTTTTCAAGAGATT
TGAAATCTCTCTTGAGCACCCAAGTGGTAACATCGCACGTCAGTCTTATC
TGCGAAGGATGCATTCCAACCATTGCAAGTAACAAAGTGGCACTTGGTGT
TAAAACGTTTGCTCAGTTCGATCCAGCAGCTACTATGGAGAATTTGGCTA
CAATGCATAATTCAAACAACCAAGCTCAGCAGACCGTCGCCAGCGCTGCC
AATATAGCAAGACAGGGGAAAACGGTTGCTACCATAAGGGAAAATGAAGT
CAAAAGCACAATGTCTGCATTGAGCACGATTGATNCAACCAAGCTCAACA
GACCGTCGCCAGCGCTGCCAATATAGCAAGACAGGGGAAAACGGTTGCTA
CCATAAGGGAAAATGAAGTCAAAAGCACAATGTCCGCATTGAGCACGATT
GACGGTGAAAAGGATAGTGTGCTGAATATCAATTCTCTTGTAGCTGCTCT
GGAAGATTACGTCACTCAAGCCAAGACAACAAGTGTAGGTGTACctatca
atttctttttaaagaatattaCCAAAGCTGATTTGGCCAATATGTGGGTT
AACAAATATGTTTCCAAAGTGAAAACGACTGATGACAAAGCGGATGGCCC
ACCACCATCAACAGAACCTGCAACAACAGAGTAAGTGAACTGAAAATAAT
GCTGTAGTCCAATAATTGTATTTAAAGATTGTTGCTAGAGTTCCTAGTTT
TATCTAGGTACTCTGCCAATATCTTTA Coding sequence (CDS) from alignment at scaffold_222:6318..9044+ >TCONS_00052896 ID=TCONS_00052896|Name=TCONS_00052896|organism=Clytia hemisphaerica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_222:6318..9044+ (Clytia hemisphaerica)
AAAATGGCAACTATCCCGTTTGACCCAACCATCGTTCTTGGTAACCTTGT
CAATCCTCGTAAATTTGACGTTTTGGAACAGATTGGGACACGCCAGACGG
AAATCGCTGCAAAGCAGCAAGAGTTGAACAGCATCTTGGCTGCTAAAAAC
AGTCTTGATATGACCAAGCAAGAGATTCATTCCATGGGTGTGGCAATGGA
TGAAAGCCTTGATGAAATAACGGAAAAAATGAATATTGAAATCAAGGCAA
CAATCAAGGATTATGCAGAAACACAAATAAAAAACCTGCCTATTATTGCT
AAATTGAAGTCGGGTATCGCTAATATTGCTGATCATGTCGAATCACCGCT
TGACTACAATTTGTCcttattgaaaaaagatttaccaATCAGTTCTAATA
CAATCAAGATGAACTCCCAGTATTTCACTTTCTCTCAAAACAAGCAAAGT
AGCAGAGCAACTATTTCTCAAATGAAGGCTTTTGCTGGTGGTGAAGTATC
TTTTTTTGGTGATCATATCAGTTCCAAGGTGTCTAGTGCTGTTCAAAGTC
AGATgacaaaacaaattcaaaagcaTGATACAAGTGGCACGTTGGTTATC
ACTGCAACTTGTACTCACGCAAACGCCTCCATATTTGCTCCACTTGTCCT
TGATGTTGACAAAGCTATCAGTTGTTGGAATGATTATTTCCCTGAAGACA
AATTGAATCCTAGGAGTAAAAGTAAGATGTGTCAATTAGTCATGCAGAAC
GAGGACAACAACAATTCAATGCATTTGGTATCAGGCGCTACTTATGGTTC
CTGTTTTGTAGGTATGGTACATCATTTGCGGGAGACATCAACCCAGAATA
GTGAGAGTATGATGTCATCTGCCGAATCTATGACAGCCAGCTTCGATATT
GCTGGTTGGTTTTCTCACTACTCTGGTGGCTTTGGAGTCGATTCATCCTT
TTCAAGAGATTTGAAATCTCTCTTGAGCACCCAAGTGGTAACATCGCACG
TCAGTCTTATCTGCGAAGGATGCATTCCAACCATTGCAAGTAACAAAGTG
GCACTTGGTGTTAAAACGTTTGCTCAGTTCGATCCAGCAGCTACTATGGA
GAATTTGGCTACAATGCATAATTCAAACAACCAAGCTCAGCAGACCGTCG
CCAGCGCTGCCAATATAGCAAGACAGGGGAAAACGGTTGCTACCATAAGG
GAAAATGAAGTCAAAAGCACAATGTCTGCATTGAGCACGATTGATNCAAC
CAAGCTCAACAGACCGTCGCCAGCGCTGCCAATATAGAAAATGGCAACTA
TCCCGTTTGACCCAACCATCGTTCTTGGTAACCTTGTCAATCCTCGTAAA
TTTGACGTTTTGGAACAGATTGGGACACGCCAGACGGAAATCGCTGCAAA
GCAGCAAGAGTTGAACAGCATCTTGGCTGCTAAAAACAGTCTTGATATGA
CCAAGCAAGAGATTCATTCCATGGGTGTGGCAATGGATGAAAGCCTTGAT
GAAATAACGGAAAAAATGAATATTGAAATCAAGGCAACAATCAAGGATTA
TGCAGAAACACAAATAAAAAACCTGCCTATTATTGCTAAATTGAAGTCGG
GTATCGCTAATATTGCTGATCATGTCGAATCACCGCTTGACTACAATTTG
TCcttattgaaaaaagatttaccaATCAGTTCTAATACAATCAAGATGAA
CTCCCAGTATTTCACTTTCTCTCAAAACAAGCAAAGTAGCAGAGCAACTA
TTTCTCAAATGAAGGCTTTTGCTGGTGGTGAAGTATCTTTTTTTGGTGAT
CATATCAGTTCCAAGGTGTCTAGTGCTGTTCAAAGTCAGATgacaaaaca
aattcaaaagcaTGATACAAGTGGCACGTTGGTTATCACTGCAACTTGTA
CTCACGCAAACGCCTCCATATTTGCTCCACTTGTCCTTGATGTTGACAAA
GCTATCAGTTGTTGGAATGATTATTTCCCTGAAGACAAATTGAATCCTAG
GAGTAAAAGTAAGATGTGTCAATTAGTCATGCAGAACGAGGACAACAACA
ATTCAATGCATTTGGTATCAGGCGCTACTTATGGTTCCTGTTTTGTAGGT
ATGGTACATCATTTGCGGGAGACATCAACCCAGAATAGTGAGAGTATGAT
GTCATCTGCCGAATCTATGACAGCCAGCTTCGATATTGCTGGTTGGTTTT
CTCACTACTCTGGTGGCTTTGGAGTCGATTCATCCTTTTCAAGAGATTTG
AAATCTCTCTTGAGCACCCAAGTGGTAACATCGCACGTCAGTCTTATCTG
CGAAGGATGCATTCCAACCATTGCAAGTAACAAAGTGGCACTTGGTGTTA
AAACGTTTGCTCAGTTCGATCCAGCAGCTACTATGGAGAATTTGGCTACA
ATGCATAATTCAAACAACCAAGCTCAGCAGACCGTCGCCAGCGCTGCCAA
TATAGCAAGACAGGGGAAAACGGTTGCTACCATAAGGGAAAATGAAGTCA
AAAGCACAATGTCTGCATTGAGCACGATTGATNCAACCAAGCTCAACAGA
CCGTCGCCAGCGCTGCCAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052896-exon-scaffold_222-1491911889:6318..7129 | TCONS_00052896-exon-scaffold_222-1491911889:6318..7129 | Clytia hemisphaerica | exon |
| TCONS_00052896-exon-scaffold_222-1510915933:6318..7129 | TCONS_00052896-exon-scaffold_222-1510915933:6318..7129 | Clytia hemisphaerica | exon |
| TCONS_00052896-exon-scaffold_222-1575043694:6318..7129 | TCONS_00052896-exon-scaffold_222-1575043694:6318..7129 | Clytia hemisphaerica | exon |
| TCONS_00052896-exon-scaffold_222-1491911889:8168..9044 | TCONS_00052896-exon-scaffold_222-1491911889:8168..9044 | Clytia hemisphaerica | exon |
| TCONS_00052896-exon-scaffold_222-1510915933:8168..9044 | TCONS_00052896-exon-scaffold_222-1510915933:8168..9044 | Clytia hemisphaerica | exon |
| TCONS_00052896-exon-scaffold_222-1575043694:8168..9044 | TCONS_00052896-exon-scaffold_222-1575043694:8168..9044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:6318..9044 + |
Blast
The following BLAST results are available for this feature:
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