TCONS_00052920 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052920
Unique Name	TCONS_00052920
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1437

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_222:354400..372632+

transcript sequence

>TCONS_00052920 ID=TCONS_00052920|Name=TCONS_00052920|organism=Clytia hemisphaerica|type=transcript|length=1437bp
TCATGAGTTTCTTCATGCTATTGGATTTTATCATGAACAAAGTCGGCCTG
ATCGTGACCAATACGTTAATATCATCACCAGAAATATCGTTGGAGgTCGT
GAGCACAATTTCAAGATTGCATCGAGGATCAACAGTCTTGGTGTTGAATA
CGATCGAGTTTCTGTTATGCATTACTCAAAACGAGCTTTTAGCAATGGTA
ATGGAAACACAATCGAATGGAAAGCTAACCCTAAGTTATCACTTGGTGGA
AATAAATTGTCTGAGAAAGATATAATgcaaatcaatttgaaatactGTAG
TGACGTCAAACCTACCACTACAACTACAACAGCCACTACTAAAAAACCAA
CGACTACGAAAAAACCAACGACTACCACAAAAACTACAAAAACCACAAGA
ACTAAAAAAACAACGAAGCGCCCGAAAACTACAAAGTCCACCAAAATGAC
GACAACGACACAACGGCCTGGAAAAGCATGTGGTGACCGAATGGGAGCTT
GCATTGCCGTTCAATTCAACAAAGGCTTATGCCGTTCGTATAATAAATAC
TACTGCCCCCGATCGTGTGGTTCCTGCAAAGGTCCCGAATCTGAAAAATG
TATGAATTTGAAAGATACAAGATATGATTGTCAATCAAGAGCTAAACGTG
GAGAATGTCAATCTCGATATCGATCTCAACGATCCATAATCCACAAACGG
AGAATGAAGACTCAATGTCCACGTGTTTGCTGCGATCGTGGAGAACTCTA
TAGACGTCCCCAATAAAAAAAGAggcaataaaaataataatctaaatttt
gatatataaaaacaaGGTCTCAATTTTATGCATTAGAAAAAACGTGGATT
ATCACTATCAGATGATTAAAGTCCAAACAATTTCAGCCTTTATTTTTAGG
CCTACGTTCTCTACTCTAGAAGAAATAGAGGAAAGAGTTTTTCACTTTCA
CATCTTTTGTATCATTTATCGTAATTTTTACTGGGATTTGACTACCTTTT
CCAATTTTACAGCCTTTTTCCTGCATTTtcaaataatgaattaatacttt
aatgggataaacttttgcagggattaaatttcgcggttgggcctttccgc
gaaattcaaaaatttcgcgggtggcaatattttcacgattttgtggcTTT
TACTGCCAAATCATGAATcgtggttgttgaaatacacattattagcgctc
ctttgatgcaagtaaccattcaaatagtatttatctgacatattttgagt
tttgtttagaaatatttcgcggaagaggcccttccaaatttccattagga
tttaattttgcggattttcgcggatgacacccaaatccgcgaaatccgcg
aaatttaatccccgcgaaagttcatcccattaaagtatcgcATCGATGAA
TATTTATTATACATTATTTATAATAAATTAATCGAAA

Run BLAST on NCBI

transcript from alignment at scaffold_222:354400..372632+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052920 ID=TCONS_00052920|Name=TCONS_00052920|organism=Clytia hemisphaerica|type=transcript|length=18233bp|location=Sequence derived from alignment at scaffold_222:354400..372632+ (Clytia hemisphaerica)
TCATGAGTTTCTTCATGCTATTGGATTTTATCATGAACAAAGTCGGCCTG
ATCGTGACCAATACGTTAATATCATCACCAGAAATATCGTTGGAGGTAAA
GATTTGATTTCCGCAATACTGGTGTTATTATCCTAATATAACCTCTCTGA
TTtccgggacaagctggagtttttacaagctctcgtttgatttggttggt
cgttaacctgtaataaaacaattttgttactttttctaaagaacgcatca
tttctattacttcaaataaccaattagtgaagtctcttgtaaaaactcca
gcccatCCCTGATTTCCATCACACCCTAATATAAATTGTATCTGAAAATA
ATGTGGCCAGTCGATataattttgcgcccctcttatCTACGCTACTGATA
ATTCTCAAATTATATAAACGTCgcgttgaaaaataaaaatcctgTAATCC
AAATTATTAAATTTAACACCTCGCTATGAACTTCTACTTCATTCATTTGc
tatatttttatcttttaggTCGTGAGCACAATTTCAAGATTGCATCGAGG
ATCAACAGTCTTGGTGTTGAATACGATCGAGTTTCTGTTATGCATTACTC
AAAGTAAGATATTGCCAACATTGGTTCTTACGTAACCTTGAAAAGGtctg
tttccaaaaaaaaatggCAGTCCGCTAATTCTGAAACATtatcgagttta
tgtattcgagaacAACCGGAGGCAACAtcgagccgtacatcaactattgA
CTTTGTTTTGTGTCGATTTCACTTACCTTCGCCCTCGATAACATAAACTC
CCCTtgtaaaaattcttgataagatctgaaaagatcgttgaagatctttc
aagatctttaacaagtaagaatctttaaaaaatctttgtaagatcttaca
acgATTCTTAggcaatcttgaaaatttcttccaacaaaaagatctttaaa
gatcttgtaAAGAAATCGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTTAAGAATCTTAAAAGCACGTAAATT
TCTGGTTatgattgtttttcataagaaggaGTCTTTAGACTCAAGGAGAG
CAATCTCTTAGGATAGTATTTACGAAACAGTTTTTGGTCAGCTTCGAAAT
ACGGTAAgtggtttttttcttttgtgtgtGTGTTATCATTGACTGTACTA
ATGAAATAGTTAATTAATGACGAGATCATCAGTTGAATGCTGTCACTCGA
GCGAAGCTTTCGGCCCTTATTCAATAACTGAACGGGGATAGTAGTAAAAT
TCCgtcagcgaccgtagtgcagtggtagagcatccgtctACAgtgtgcaa
ggttgtgggttcaacccccggCCGGGTCACACCAAAGATTcctaaaatgg
tacttgatgcctctctgcttgatgctcagcaagtAGGTGGAGCAatccct
cccctaccttcaggtagatagctatcgaaagtgGAGCCTGCAGGTCATCT
ccgacttacttttacttaaAATTCCGTCAAGATCTTGAATCACTGTAAGG
GACAAGAATCTTATTCAAAACTTATAAAAGAGTCTTATCAGATCgttaaa
gatcttgaaagatcttgGCACGTTCgtagtaagaaactgaaaaagaagaa
gcaaagtttcttgataagatcttttcaagaacttttcaagaatttttacc
agggtCGCCATTGCTTTAAAAGAGAAGACAGATTTTCTTAAGTGATTCCT
GGATGGTCAGATTAACTAAGGTTGATTAAAGTCTTTTANAAGAGAAGACA
GATTTTCTTAAGTGATTCCTGGATGGTCAGATTAACTAAGGTTGATCAGA
GTCTTTTGGAACATCTTTTTTCTACGAACTTTCGATGGACTCACAAATCA
TTAATCAAACAAAACTTTTTCTTCTTCCAGACGAGCTTTTAGCAATGGTA
ATGGAAACACAATCGAATGGAAAGCTAACCCTAAGTTATCACTTGGTGGA
AATAAATTGTCTGAGAAAGATATAATgcaaatcaatttgaaatactGTAG
TGACGTCAAACCTACCACTACAACTACAACAGCCACTACTAAAAAACCAA
CGACTACGAAAAAACCAACGACTACCACAAAAACTACAAAAACCACAAGA
ACTAAAAAAACAACGAAGCGCCCGAAAACTACAAAGTCCACCAAAATGAC
GACAACGACACAACGGCCTGGAAAAGGttggaaaatcaaatatctttcCT
AATTTTCATACAAAGATAGTACAAATTTTAAGAATAGTTTATAGAATAGA
CGCTAAAAAAGGTAGATTTTTTCGCCTCTAGTGTCAGACCTGGTGTAGAG
TAAAAAACCGCTAAAATGGAAAAAAGCAATTACTCTCgtgtacctaatag
ccgggggatttgaataagcagggggttggaaaaatggTGGGTTGGAATTa
gaaatgtcctgggtggaaaacttttttaaaggaGGCTAATACTGCNtctg
taaacatctccgccactgcttactccacccgaatttatcacgcctctcct
aaactattcccttttttagtgatcttgtgtagacgataggatcgtctaca
gGGTTACCAAATTAATCCTGCCTCCGAAACTATTCCCTATTTTAGTGATA
GTCTACCTCGGGAGTTACTTTGGTATAAAATGGGTTTTGACAAGTATATG
CGAGCTTTAAGGACAGTAAGGATCCCTTTTTAAACCCTCAAAAGTCTATT
AAAGGGGTGCAAGAACCATCACGAATAAGCAATTGAAAGGGAACGGAAAT
ATCAAGATCAACTCCCTCAAAGGATAATANGAGAGTATCCTGTAGGATAT
CTTTCTTGGAAAACTTTggcaattttgaaataagattTTGTAATGCAATC
CAATCTAAGGTCACTTTTTCCATAAATCATGATacaaatctcataaaaaa
gtctCACGTAGATCAAATCATGACATTGCAATAAACTTGTCTTTGATACT
TTTCAGCATGTGGTGACCGATTGGGAGCTTGCATTGCCGTTCAGTTCAAC
AAAGGCTTATGCCGTTCGTATAACTATAAATACTACTGCCCCCGATCGTG
TGGGTCCTGCAAAGGTCCTAAATCTGAAAAATGTATGAATTTGAAAGATA
CAAAATATGATTGTCAATCAAGAGCTAAACGCGGAGAATGTCAATCTCAA
CGCAGGAGATATGGATCTGTTCGCTGGAGAATGAAGACTCAATGTCCACG
TGTCTGCTGCGATCGTGGAGAACTCTACAAACGTCCTCGATAAAAAAAAG
AGACAGTAAAATTAATAATCTAAATTTTGATATACACAAAGACAAGGTCT
CAATTTTATGCATAATAAAAAACGTGGGTTATCAGATGATTAAAGTCCAA
ACAATTTCATCCTTTATTTTTAGGCCTACGTTCTCTGCTCTAGAAGAAAT
AGAGGAAAGAGTTTTTCACTTCCACATCTTTTATACCACTTATGGTAATT
TTTACAGGAATTTTCACTACCTTTTCCAATTTCTTCCTGCATTTTCAATT
AATGAAACAATATCGCAATATATCATTTATAACAAATTAATCGAAAGCAA
TGATTGCTTATTGCTTCattaaattatttatttatttatttatttacttg
atttatCTATTTGCCATTTAAAGTAAACAAACTTACAAATGATTAATCTT
GGAATTGTCTTGTCTTTCAAACCACCTTCTACCTCCTTCTTTCAGCAGGG
Ttactagacgatgttatcgtccgttacagtgataataaaggcgggaaaaa
tggctgtatggcgttatggcggtatacgaaAAAAAACGGCGGGAGAGTTT
CNgttaaaactcagagttaaaactctacccttcgaacctactttagagca
catacaaatcgattgtggtttcaaaacaccccggtgaatttcccttttgt
gccaagtattttgtcactgattgtagattcCCTCTTGTTGATTGACGTCA
CAGAATCGCTCACTTATGATTAAATACGTGATAAACGATCACGGTTGCAA
TAACATTCGAGTTGTTGACAAACGCCATAATTGGTCTGTTCTTTTGTTTA
AAGGGGCATTGGCAATCAAAGATTTAAATAGCAAATCGCAAATAGCATTA
ACTATCTAGATTCCCTCTTGTTGATGATTGACGTCACAGAATCGCTCACT
GAAGATGAAATACTTGATAAACGATCACGTTTGCAATAACATTCGAGTTG
TTGACAAACGCcataatacacctttcctgagtttttttcgactttttgaa
aaacactgttCCAAAACCCTGCTCTACtttttatcgaccgccggaggcgg
tttctttcatagtggtacgctaatctcgttttgccttggctcattacttt
gtctaccatttactttcgggtTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtcgagacatgaaaaatgactatat
tgtaatctgttttcaatgaataatctaaaatgtactggagatgacatgta
ggcgttaataatgtgcgcgcactctctcgcgagcgtgatgcgtgatggaa
ggcggtcgtttcagtgtggtttagatccacactgtgacctagttaatttc
gcctagcgaaagtattacgatagcctttcgcggcggcggtgtaataaaaa
atttacaaaacgaaagtactcgatacggtggacaaactcactaaattcaa
tttacaaattacacgctcgtataaccacggacgattttcgggcgttttct
ttggattacgtcatatagcTTTGtttctttagcttcacagtttggatttt
ttctttattttcttataagcatatactttataagaatcaaatcaataact
cttgataaacggtgatatacccttcgataattagttcttacaaagtaaat
aaggaatggtgcacaatatgagaatatctatttttcttataagcatatac
tttataagaatcaaatcaataactctcgatagaaggtgatatagccttcg
gtaattagttcttacaaagtaaagtaaacaagggatggcgcacaatatga
gcatatttatttttcttataagcatatactttataagaatcaaatcgata
actcttgataaacgatgatatagccttcggtaattagttcttacaaagta
aacaagagatggcaggcaatatgagcatattcatttttttataagcatat
actttataagaatcaaatcgataactcttgatagacagtgatataccgtt
cagtaattagttcttgcaaagtaaacaagggatggNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
taaacaagagatggcgggcaatatgagcatatttatttttcttataagca
tatattttataagaatcaaatcaataactcttgatagacggtgataaaCC
CTTcgataattagttcttacaaagtaaacatgggatggcgcgcaatataa
acatatttatttttcttataagcatacactttataagaatcaactcaata
actcttgatagacggtgatatacccttcggtaattagttcttacaaagta
aacaagagatggcgggcaatatgagcatatttatttttcttataagcata
tattttataagaatcaactcaataactcttgatagacggtgatataccct
tcggtaattagttcttacaaagtaatcaagggatggcgcgcaatatgaac
atttttaccttatcggggaaaacttcgtcggggaaaaatgtTCGTAACTT
GCTGTTCTTAAGAATTAAGCAACCATTGTTCGTAAATTGATCTTATCTTT
TTAGCGactttgagcctcgttgttcatataaaattgtttcatcaaggctc
gatgtaaagtagacttcagattagcttccatctctacttcttgttttttc
ccatgcagtttgaactttaggcgaaattttcgacttcaagtcgtcttgtt
taatTTAGAAAGATTCTACTACGaaatacaaaatcaacaaaaaaagaatt
atgttAAAAGCTCTTCCggttcttgagatatttcaattttaaagtttttc
cttAAACAAAAGTATCCCATGGAAACGGCATAGAAACGAGGCCCGGTAgg
ataaaatatcttttaagaGAGGTTTGactgtaaaaaaaaaaggaattaaa
acagccataaaaaaggaacggaaaaagcttttgatctcaaattttcagaa
tgaCTTTGTATcaccaaaagtttcaaaagtaTCAAGTTCTCGTTTCAAAC
TAGAGAGGTCGgaaaaaaatcgataaacttgggaaaggtgtattggtcTG
TTCTTTTGTTTAAAGAGGCATTGGCAATTAAAGATAAAAAACCAGAAATG
AACAGGGAAATGGACTCGGGTTTGAAAGCCTCTAGAGACTTGAATTTGTT
CCGCTAAaaaaagtctgtctcgaaataatttgcagctggagaaataaata
gctgtaacttttgatagaattcgaatcaagttacggttttgtgctcgtta
aaaagatattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtttttaacgagcacaaaaccgcaacttgattcg
aattctatcaaaagttacagccatttttttctccagctgcaaattatttc
gagacagactttagttaatttttgatttttttaaaaaatttgttcaacaT
TTTCAGTATTACTATCACTCTGACGATGCTTTTGTTGTGAAGCAAAATat
tagcttttcaaaaaatgaaaattttgttgtttgtgatctGACTCCACATT
GATTCatggcaaaatcaattttcgtattaagttttatcttgtttttactg
aagctgtcatatggtcaaaatttttggataaataaagtttaaaaacttTG
GCTGGACATCGGGAAAAATGTTATCTCGAAGGGTATCGATTTTCGCACTT
TGATTTGGTTACCACCTAATCAcatcgcaaacctagtaccagCCTCCTCC
GAGGCTGATGACTGAGCATTATTTGAACAGTAAATTCAATGAACCTAAAA
TCTGCCAAAAAGTATCAAATTTAAGACTCACCCTGTAGTAAGGAAGACGG
CGAATTAAGTGTGTCTTTTTTCCAAATAcatacatccccttctcacagac
ccggtaggattttctCATCCAGTAGGGATGAAAATAGTGGACTGAAACTC
gacggggattgatattcccatattttttatggctggggatttcataatat
tcaatatcataatattttgcagtgaggattggtttatttgattattttca
gtggggacaaaaactgGAGGATAATCTCTAaccggggacaatattttgga
caattttactAGTGGGAAGGGTTCTCTCTCAGTGGGTATGAGGGGGTGTA
TAAATGTTTGTGAACATTAGATTGGTGgtgaaagaacgttgtgtgctagc
tgggtgACTAACGGATTAACcaattaaagattttgtttgatttttggtGA
AGGTCAGCTATATCACAACCTTTTATCAAAGGCCTTGTTTGACCCATAGA
TctataaagcccaaagggcttgATGGCGTACTTTTTGCTGAGAAGTGTgt
cgtggttaggtaggaaaccCTACTAAAGTCACCATAATAAATAGCAATAA
ATTGCataaaacaatagcaacaatattttttccgatattcactttttttt
gcctgcgatggcttaaagcacgacatctagcccttcgagctttatagaga
agaattttgaatttctcaTTCATTAAAATGGGTCGGCGGGAATGTTCTGT
AGCCAATGGAACAGAATCATAAAGGTCACAAAGGTATTGTTATTACCTGG
AGCTTTCATTAGAGTATTCTCCCCTTGTTAAAGTATCTAATATGTCACAT
ACCCATTAAAACCTCAGTCCCACtgttggaaaatttggcaaaaaatctCG
TCCCCGTTGGGAAAAATaccttagaatttcagccccactggtaaatttac
tttgatttcatcccccattcgaaatgtttaaaaattgcacttcaaagcCT
TCCCCACTGGATCTTTTTATCTTGGAACAATTTACCCCCATTGTAGGAAA
AATTTTAACGgaactgtgagacagggatgtcttCGTTGGGTAATCATACT
GGTATTCTTAGCGAGGCTACTCTTATAATAAGGTCGCAAATAAGATTAAG
TGGAATGATATCAACTTCATCCTGCCAAAGTCtactaaaatttggaaaaa
tgacAAACTATCGTACTTTGTATTACATCTGACCGACGGTAAAATATAAC
GTCATTATTACGACAATAAGACGCACTGACTTTCCAAAATCACGGCACGT
ATCTCCGCCTTTGAAGATTCTCCAATACgcaaaatattgtttcaattttt
ctggTTATTAGATGTCAAGTTTGGTATATAAAGTGTAATGGATTTGGTTT
GAAAATCAGAACGCTATCttaccatcatcatcatcattgctcgaccTCAG
TCgagacaaaaaaagaaaaagaaagaaaaaaagacgtTATCTTACAATCA
CTCCTTAGGATTGTGTAATAAGTACCCTTCTtgttacacactttttttta
taagaatacactttataacaatgtccatgatgaaaatggtcaaaaaatta
agaatatgctaagaatatcaccatcatggaattttgctattcaagctaag
aatgccatttttaaagcatttttgattataaatagtcaattacccccaag
taaggctcgcTGCTCAAAGCTTCTGCTTTCCTTCCAATTCCAATTGTTGA
CTCTTTGCGACATGTGCTTCTTGTTGCACGTCCAATTCAGATCTGCTTCT
TTTAGATTTTCTTCGCTATTTAAACTTTTCTGATATTTGATAATTCGTTA
ATTTTCGAAACGTTTTGGTCACGTTTTTTGCAGGGGAAGGTACTTTTTCT
TTCTGAAGGTAAATTCCTGAAGAGATCACGTTTCTTGCAGGGAAAGTACT
TACTTTGTGAAGGTAAATTCCTGAAGGAATTATTGATCAAGTCCGAAACG
TTTTGGCTACGTTTTTGCTACGTTTTTGCTGGAAAAGTACTTTTCTTTGT
GAAGGTAAATTCCTGAAGGAATGTTTAAATATCTGAAGGATTTGTTTGAT
CAAAAGTCGGAAACGATTTGGTTGCGTTTTCTCTAGGTTTTTCTTAATAG
AAAGAATTTCAATTGTAAGCTTATAAGCGAAATCGGCGTGCCATTCTTTT
GGTATAATTTTTGGTGAAGTGAAAAATTGTATAAAGAttcttttaaccct
ttaagtgccgatgtcgtatatatacgacatgggctatataggagggcgaa
gccctcctgtaatgcccagtttgagttagaaatcgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttctaat
tccttctagatcaggagatataagcccttaaagtttgaactagcgatttt
ttaaaaaaaacttagaaaaaaggaccctggcactcaaagggttaagaaga
ttttttgaacaatatatcttttgtgaagaaattttatagTTTTCACTTTA
TTCAAATATGATGAAGATTTTTGTATTTCTTTGTATGATTGTGTTCATAC
GCAGTCATCCTTTGAACCATCCAGGGGAAGAGAACCCAGCATTTGACTAC
ATCAATGATGCTGATAAAGGTTGGTATACACTTCTTTCGTTATTCGAGCA
TTCAATTCGAGAATTTTTTTCCTATACAGtatcaattattttgatgatgc
AAATTGActaatttagtctattttgaacGTTATTTATGACTTTTTCTACA
TTTAGATCTCGATAAAGAACATTTCGAAGAAGGCGATATTGTCAAAGTGC
AAAATCGTGCTGCTTTGAAAAAGGACCGGGGTCAATGGCCGAAAGGCATT
GTTCCTTACACCATCTCAACTGTTTTTAGTAAGTACATTTCTAATGATAA
GTAGTCTGGATTTCCAGACCACTATTCTTTTAACACAAAACGTAGGAGCG
ATCCTGCctcaaagtcaaaaagaagaaaaaaggcCTTACGGGAAAGTTTT
TCTACTACTGAAAAGAAGCTTTTGAGTAAAAGTGATGTTAATTAGTAGTC
TAGCTCTAGACTAATTGATAAGCAATTGTTCAATCATAAAACCCCCGAGG
TTATACTTTTTTTNGACTAATTGATAAGCAATTGTTCAATTATAAAACCG
TCGAGgttatactttttttaaatagtaAAGGCGTTTTGATACCAACGTTA
CATTCCAATAAAATCAACCTCATCCAGTCTTTAACCTTACTAATAGACTC
CAAAATATTAGAGTCAGCTTATGTATTAACATACTTTttaggacggtaga
gtgacaaGGTGATTTTAAATAACCTGCAGTTCTGAACagcaaaataaaag
taaaagtgCTTGTTTACCGACGTCATCAAGTTAATCAAGATGAAGACATA
GCAGAGAACTACAAGTCTCTAccgaagaaaaaaaacagatgCATACTTGC
TATTATCTGGTATTGtgatactcttgtctcccgaatagacgggggggtcc
gaataagcaggggggtaggaaaattttctaaattctaataagcggggggg
ggatggaataagagggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNTATTTATgctacggccttgaaattttcagggtatgtTCAGGAAGGA
TAAAGGATCCTAAAAAGCCCTATATcccgaaattgataaatttttcacca
attttcaaaatctcatatgactacccccttaatcaattgtttttcttctt
tcagaGGAGCTTTCAGCAATGGTAATGGAAACACAATCGAATGGAAAGCT
AACCCTGATTTATCACTTGGTGGAAATAAATTGTCTGAGAAAGATATAAT
GCAAATCAATTTGAAGTACTGCGGTGACGTCAAACCTACCATTACAACTA
CAAGGACGACTAAAAAACGAACGACCACCACAAGAACTAAAACAACAACG
AAGCGCCCAAAAACTACAAAGACCACCAAAATGACAACAACGACCCAACG
GCCTGGAAAAGGTTGGAAAATGAAATAACTTTTCTTAATTATCATACAAA
GATAGTACAAATTTTAGGGATAGTGTTGACGCTCCAGCGTCAGACCTGGT
AAAgtaaaaaatcactaaaatgaNCAATAAATCTTTATATTGCCTGAAAA
TGCCACACCAAATTTGATTTAGTGTTCTGTCCCTATATATTCATCTTCGC
TAAGAAAGTAAATAAAATTCTCTGTTCTAagtagcctgttagacgaaaac
cgcttttttatcgcgataaaacaaagaaaaaatttggtttgtgggaaggt
actggctatGTTCTAAGATGTTCTGgcaataaaatattgaaactaTTATC
ACTGTTTATCTGTCAGTTTTGTCAGTTGAGTTTAAATAGGAAAGTCTTTT
TGAGTATGGAAAGTCTTCTGTATTTAACATactttaagggaacttatttt
ggcggaaaCTAATTTAGACGaaactcgccaaaattagttcccaccaaaat
ttaatattttgctCCATCgcaaaaataagttcccgccaaaattaaatttt
ttgtttccttgcctaaatagcccctgaaattcaccaaaattagtacccgg
taaaataagttcccttatgGTATTTTGATTCCAATATCGAATTCCATGCA
TCGAAAGCATGGAATTTCATTACCATAACCTTACCTTTTTTTATTTCCCC
TAGTTGTTGGTCAATGGTTGGTATGACAGGAGGTAGACAAAGTCTTTCCA
TCGGCAATGGGTGTTTATGGGAAGGAACGATCATTCATGAGTTTCTTCAT
GCTATTGGATTTTATCATGAACAAAGTCGACCTGATCGTGACGAATACGT
TAATATCATCTTCAGAAATATAGTTGAaggtaaaatttatttttcaacac
TGCTCTAACTAGACTTTGATGCATCTTCTCTGGTATGAATCATCTTCTAT
CATCTTTTTATCACCTAATTTTAAATTGTGTCTCTATTAGAGTGACCTAT
AAGCAttatttttaggattatttatttttatttttatttattttatttta
ttaattgtctttcaggctcttccatattttacaatggctattcgtcctat
gtaaaaataatcatatttaaataaaaagataattatattctatgaaaaaa
aatatgctgtagaaacaaaacacacaaaaaaaaacaactcaagaATACTG
ACAAAGCTCACAAAATTGCAGATTGTAAAACCGTAAAATTATCTTTGGAG
TTATTAGAGATAGCCTCCAAAAATGAGATTCTCCGCGCTCACCCACTCAC
TCTGACCCAATTCAACCCTACCTCCCATTCAACTGATAAAAAAATTGTGC
TGAAACTTTAGAATTCTGAAATTGTCAATCATCCAAATTAACGGTTGCGG
AATATATGAAATTAGATACTCGTTCATTTTTGAGGATTTCTAATCCAGTT
TAGTAGCTAGATAAAAATGGACAGAATTCTTTCATCTTTTAGGTCGTGAG
CACAATTTCAAGATTGCATCAAGGATCAACAGTCTTGGTGTTGGATACGA
TCCATTTTCTGTTATGCATTTCTCAAAGTAAGACATTGCCAACATTGTTT
CTTACATGATCTTATTAAAGTCTGTTTTCTCCTTTCAGCTTTTATTTAAA
CAAAATCGTGTCCAAAGAATCTCTTTGACTTATTACGAAGAAACGATTTC
AGTATTAATcaattgtttttcttctttcagaGGAGCTTTCAGCAATGGTA
ATGGAAACACAATCGAATGGAAAGCTAACCCTGATTTATCACTTGGTGGA
AATAAATTGTCTGAGAAAGATATAATGCAAATCAATTTGAAGTACTGCGG
TGACGTCAAACCTACCATTACAACTACAAGGACGACTAAAAAACGAACGA
CCACCACAAGAACTAAAACAACAACGAAGCGCCCAAAAACTACAAAGACC
ACCAAAATGACAACAACGACCCAACGGCCTGGAAAAGGTTGGAAAATGAA
ATAACTTTTCTTAATTATCATACAAAGATTGTACAAATTTTAGGGATGGT
GTTGACGCTCCAGCGTCAGACCTGGTAGAgtaaaaaatcactaaaatgaa
aaaaaagcagTTATCGTGTAGGATATGTTTCTTGGAAAAATTTGGGGatt
ttaaaatagaattttgtaaTCCAAGTTCACTTTTTCCacaaattataata
aaaatctcataaaaaagtctCACGTAGATCAAATCATGACATGGCAATAA
ACTTGTTTTTGATACTTTTCAGCATGTGGTGACCGAATGGGAGCTTGCAT
TGCCGTTCAATTCAACAAAGGCTTATGCCGTTCGTATAATAAATACTACT
GCCCCCGATCGTGTGGTTCCTGCAAAGGTCCCGAATCTGAAAAATGTATG
AATTTGAAAGATACAAGATATGATTGTCAATCAAGAGCTAAACGTGGAGA
ATGTCAATCTCGATATCGATCTCAACGATCCATAATCCACAAACGGAGAA
TGAAGACTCAATGTCCACGTGTTTGCTGCGATCGTGGAGAACTCTATAGA
CGTCCCCAATAAAAAAAGAggcaataaaaataataatctaaattttgata
tataaaaacaaGGTCTCAATTTTATGCATTAGAAAAAACGTGGATTATCA
CTATCAGATGATTAAAGTCCAAACAATTTCAGCCTTTATTTTTAGGCCTA
CGTTCTCTACTCTAGAAGAAATAGAGGAAAGAGTTTTTCACTTTCACATC
TTTTGTATCATTTATCGTAATTTTTACTGGGATTTGACTACCTTTTCCAA
TTTTACAGCCTTTTTCCTGCATTTtcaaataatgaattaatactttaatg
ggataaacttttgcagggattaaatttcgcggttgggcctttccgcgaaa
ttcaaaaatttcgcgggtggcaatattttcacgattttgtggcTTTTACT
GCCAAATCATGAATcgtggttgttgaaatacacattattagcgctccttt
gatgcaagtaaccattcaaatagtatttatctgacatattttgagttttg
tttagaaatatttcgcggaagaggcccttccaaatttccattaggattta
attttgcggattttcgcggatgacacccaaatccgcgaaatccgcgaaat
ttaatccccgcgaaagttcatcccattaaagtatcgcATCGATGAATATT
TATTATACATTATTTATAATAAATTAATCGAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033433	XLOC_033433	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00052920-exon-scaffold_222-1491911889:354400..354494	TCONS_00052920-exon-scaffold_222-1491911889:354400..354494	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1510915933:354400..354494	TCONS_00052920-exon-scaffold_222-1510915933:354400..354494	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1575043694:354400..354494	TCONS_00052920-exon-scaffold_222-1575043694:354400..354494	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1491911889:354918..355002	TCONS_00052920-exon-scaffold_222-1491911889:354918..355002	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1510915933:354918..355002	TCONS_00052920-exon-scaffold_222-1510915933:354918..355002	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1575043694:354918..355002	TCONS_00052920-exon-scaffold_222-1575043694:354918..355002	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1491911889:356630..356925	TCONS_00052920-exon-scaffold_222-1491911889:356630..356925	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1510915933:356630..356925	TCONS_00052920-exon-scaffold_222-1510915933:356630..356925	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1575043694:356630..356925	TCONS_00052920-exon-scaffold_222-1575043694:356630..356925	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1491911889:371672..372632	TCONS_00052920-exon-scaffold_222-1491911889:371672..372632	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1510915933:371672..372632	TCONS_00052920-exon-scaffold_222-1510915933:371672..372632	Clytia hemisphaerica	exon
TCONS_00052920-exon-scaffold_222-1575043694:371672..372632	TCONS_00052920-exon-scaffold_222-1575043694:371672..372632	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_222	supercontig	scaffold_222:354400..372632 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.70421e-07	0.00148822	0.22871	0.565172	0	0	0	0	0.135845	0	0	1.06101	0.181567	0	0	0	0.628146	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00052920 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 2.451e-20
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 2

Query:    2 HEFLHAIGFYHEQSRPDRDQYVNIITRNIVGGREHNFKIASR--INSLGVEYDRVSVMHYSKRAFSNGNGNTIEWKANPKLSLGGNKL--SEKDIMQINLKY 295
            HEFLHA+GF+HEQSR DRD YV I+   I+ GREHNF   S    +SL V YD  SVMHYSK AF NG   TI  + +    + G ++  S+ D++++N  Y
Sbjct:  152 HEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253

The following BLAST results are available for this feature:

BLAST of TCONS_00052920 vs. Swiss-Prot (Human)

BLAST of TCONS_00052920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MEP1B	2.451e-20	49.02	Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=...	[more]

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TCONS_00052920 (transcript) - C. hemisphaerica