TCONS_00053015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053015
Unique NameTCONS_00053015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053015 ID=TCONS_00053015|Name=TCONS_00053015|organism=Clytia hemisphaerica|type=transcript|length=367bp
ATTAACAATTCTTAACGATCggcaaataaaaaatatctcaCCCTGTAATA
ACAATCAGTTTATCTTTCGAACAATCCGGCATATCTCCTGACAGCTGAAA
CGATTCCCATTTTAATCTCAATATTTTGTTGTGATAGTAAGAGGACGAAG
ACGCACTTTCAATTCGATAATATTCGGTTGTATAGAACCCCTTAGAATAG
ATTGTACTTCTAGTTGTAACCCGGCGTTCATACTCTTTACAGCTCGTATC
GTAGTAGCTGTTACATTGGTGTAAAGCCTTGACTGTTAGGAAATATTCAA
ATGATAGAATCAAGCTGATGAAGAtgaccaataattttttttgctttgtt
tcttttttcattttctg
Run BLAST on NCBI

protein sequence of TCONS_00053015-protein

>TCONS_00053015-protein ID=TCONS_00053015-protein|Name=TCONS_00053015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
QKMKKETKQKKLLVIFISLILSFEYFLTVKALHQCNSYYDTSCKEYERRV
TTRSTIYSKGFYTTEYYRIESASSSSYYHNKILRLKWESFQLSGDMPDCS
KDKLIVITG
Run BLAST on NCBI

transcript from alignment at scaffold_223:17814..18180

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053015 ID=TCONS_00053015|Name=TCONS_00053015|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at scaffold_223:17814..18180 (Clytia hemisphaerica)
cagaaaatgaaaaaagaaacaaagcaaaaaaaattattggtcaTCTTCAT
CAGCTTGATTCTATCATTTGAATATTTCCTAACAGTCAAGGCTTTACACC
AATGTAACAGCTACTACGATACGAGCTGTAAAGAGTATGAACGCCGGGTT
ACAACTAGAAGTACAATCTATTCTAAGGGGTTCTATACAACCGAATATTA
TCGAATTGAAAGTGCGTCTTCGTCCTCTTACTATCACAACAAAATATTGA
GATTAAAATGGGAATCGTTTCAGCTGTCAGGAGATATGCCGGATTGTTCG
AAAGATAAACTGATTGTTATTACAGGGtgagatattttttatttgccGAT
CGTTAAGAATTGTTAAT

Coding sequence (CDS) from alignment at scaffold_223:17814..18180

>TCONS_00053015 ID=TCONS_00053015|Name=TCONS_00053015|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_223:17814..18180 (Clytia hemisphaerica)
cagaaaatgaaaaaagaaacaaagcaaaaaaaattattggtcaTCTTCAT
CAGCTTGATTCTATCATTTGAATATTTCCTAACAGTCAAGGCTTTACACC
AATGTAACAGCTACTACGATACGAGCTGTAAAGAGTATGAACGCCGGGTT
ACAACTAGAAGTACAATCTATTCTAAGGGGTTCTATACAACCGAATATTA
TCGAATTGAAAGTGCGTCTTCGTCCTCTTACTATCACAACAAAATATTGA
GATTAAAATGGGAATCGTTTCAGCTGTCAGGAGATATGCCGGATTGTTCG
AAAGATAAACTGATTGTTATTACAGGGtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033481XLOC_033481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053015-exon-scaffold_223-1491911889:17814..18180TCONS_00053015-exon-scaffold_223-1491911889:17814..18180Clytia hemisphaericaexon
TCONS_00053015-exon-scaffold_223-1510915933:17814..18180TCONS_00053015-exon-scaffold_223-1510915933:17814..18180Clytia hemisphaericaexon
TCONS_00053015-exon-scaffold_223-1575043694:17814..18180TCONS_00053015-exon-scaffold_223-1575043694:17814..18180Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053015-proteinTCONS_00053015-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:17814..18180 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.93651	0.478566	3.75291	3.51342	8.5148	6.0938	15.6969	6.28085	1.19469	2.48139	0.892519	0.54732	0.337127	0.691088	4.77388	4.74574	3.25651	3.4945	4.63421	11.2351	14.9471	9.68218	3.38682	1.64296	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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