Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053023 ID=TCONS_00053023|Name=TCONS_00053023|organism=Clytia hemisphaerica|type=transcript|length=1265bpRun BLAST on NCBI protein sequence of TCONS_00053023-protein >TCONS_00053023-protein ID=TCONS_00053023-protein|Name=TCONS_00053023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp MKSLLISFLFAAVFAANPNEEQCRTYAGGNVYPDERKHGVEHALHWSKAQRun BLAST on NCBI transcript from alignment at scaffold_224:4384..16352+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053023 ID=TCONS_00053023|Name=TCONS_00053023|organism=Clytia hemisphaerica|type=transcript|length=11969bp|location=Sequence derived from alignment at scaffold_224:4384..16352+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_224:4384..16352+ >TCONS_00053023 ID=TCONS_00053023|Name=TCONS_00053023|organism=Clytia hemisphaerica|type=CDS|length=6669bp|location=Sequence derived from alignment at scaffold_224:4384..16352+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053023 vs. Swiss-Prot (Human)
Match: PRDX4 (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1) HSP 1 Score: 376.326 bits (965), Expect = 1.340e-128 Identity = 175/221 (79.19%), Postives = 197/221 (89.14%), Query Frame = 3 Query: 330 CRTYAGGNVYPDE--RKHGVEHALHWSKAQISKPAPFWEGKAVVNGEFKDMKLTDFKGKYLVFFFYPLDFTFVCPTEIIAFSDRVEEFRKINTEVVAVSVDSVFTHLAWINTPRNQGGLGKMKIPLLADLTKQISKDYGVLLEDLGHTLRGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDQHGEVCPAGWKPGADTIVPDPKAKLNYFNKVN 986 C YAGG VYP E R +H+LH SKA+ISKPAP+WEG AV++GEFK++KLTD++GKYLVFFFYPLDFTFVCPTEIIAF DR+EEFR INTEVVA SVDS FTHLAWINTPR QGGLG ++IPLL+DLT QISKDYGV LED GHTLRGLFIIDDKG+LRQIT+NDLPVGRSVDETLRLVQAFQYTD+HGEVCPAGWKPG++TI+PDP KL YF+K+N Sbjct: 51 CHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN 271 The following BLAST results are available for this feature:
BLAST of TCONS_00053023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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