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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053029 ID=TCONS_00053029|Name=TCONS_00053029|organism=Clytia hemisphaerica|type=transcript|length=1789bpRun BLAST on NCBI protein sequence of TCONS_00053029-protein >TCONS_00053029-protein ID=TCONS_00053029-protein|Name=TCONS_00053029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp MRMLVNNYLLVILMLAPIPYVLLKETPKECGIVLLQKENDSHCLKERRRNRun BLAST on NCBI transcript from alignment at scaffold_224:91909..100121+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053029 ID=TCONS_00053029|Name=TCONS_00053029|organism=Clytia hemisphaerica|type=transcript|length=8213bp|location=Sequence derived from alignment at scaffold_224:91909..100121+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_224:91909..100121+ >TCONS_00053029 ID=TCONS_00053029|Name=TCONS_00053029|organism=Clytia hemisphaerica|type=CDS|length=15201bp|location=Sequence derived from alignment at scaffold_224:91909..100121+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053029 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-20 Identity = 72/296 (24.32%), Postives = 136/296 (45.95%), Query Frame = 3
Query: 804 ALGKRTTLAKAVNNGLVFVLYHPEIDHITASSPFSDPAQERTFRKMNNPIVFFILTDDGFLKIVSIQRDSEKDSEVLQPIESDPE-EWLKVKGDAEMADSNYCQGFYHSGKIHLVSTIYCLAYRRHIDKNHPLYDFFLYHCEGTVPHISLVYHTLLTSNERSDASLGMGHQGFLQLGTKAFNSRMYGELDLPFFLKRKGLDNKR-IKYYPFRDDAEVLWEELAGFTNDVISEIYKTDDEVSQDPSLQSFATE--LSSKDAGNMAGFPTYFESKQSIRLFLLRFLW-FNVIHTSLNY 1676
+L ++ +L + V G +F++ +D I A+ +DP T + + PI + ++IQ + E + SD + +WL K +D + Q H + HLVS ++ +A R + HP++ + H T+ + L+ D + G G +Q+ +A Y L P +K +G+++K I YY +RDD ++WE + FT +V+ Y+ D V +DP LQ F + + +GFP +S++ + +L ++ + H ++N+
Sbjct: 266 SLERQLSLEQEVQQGNIFIVDFELLDGIDANK--TDPC---TLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 556 The following BLAST results are available for this feature:
BLAST of TCONS_00053029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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