TCONS_00053261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053261
Unique NameTCONS_00053261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053261 ID=TCONS_00053261|Name=TCONS_00053261|organism=Clytia hemisphaerica|type=transcript|length=525bp
GTGTCATAAAATCACCAGTTAGCCAAGAAAGGTACTGGACTTTTGAATTT
ATGTTTTTGAGGGTTTTTTAGTAAAGAAGGGTTGAACATACGGcaataaa
acagtttttaaaaaatagtttatgatttcaaacaaaaattttgtctATAA
GAGCTTCAACTGAATGCTTTCTTATAAATGATCTAACATGTATTTGTTTA
AACGAAAAAGACTTGaattaaagttttattttactACTAAGATATTAAAC
ACTGTAAGGATTATAGTATGTAAATGTTATGTCTCTAACGGCAACAGTAG
AATGTTTAATATTTCGTGATTTGTGTACATGAAAAGTCTCACTTTATAGT
AAGAACCATTAAACTTAGCCCGGGGttcacttaaagctttttttatagac
tggatggcgctttTATGTGGCTCGGTAGtgtatggtaatatgcttttgcc
taggcggactgtaaaacagcccgccagattttcgttgtttttgccaggta
aaaaaagaacgaagcaatgttttta
Run BLAST on NCBI

transcript from alignment at scaffold_227:262887..263411

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053261 ID=TCONS_00053261|Name=TCONS_00053261|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at scaffold_227:262887..263411 (Clytia hemisphaerica)
taaaaacattgcttcgttctttttttacctggcaaaaacaacgaaaatct
ggcgggctgttttacagtccgcctaggcaaaagcatattaccatacaCTA
CCGAGCCACATAaaagcgccatccagtctataaaaaaagctttaagtgaa
CCCCGGGCTAAGTTTAATGGTTCTTACTATAAAGTGAGACTTTTCATGTA
CACAAATCACGAAATATTAAACATTCTACTGTTGCCGTTAGAGACATAAC
ATTTACATACTATAATCCTTACAGTGTTTAATATCTTAGTagtaaaataa
aactttaattCAAGTCTTTTTCGTTTAAACAAATACATGTTAGATCATTT
ATAAGAAAGCATTCAGTTGAAGCTCTTATagacaaaatttttgtttgaaa
tcataaactattttttaaaaactgttttattgCCGTATGTTCAACCCTTC
TTTACTAAAAAACCCTCAAAAACATAAATTCAAAAGTCCAGTACCTTTCT
TGGCTAACTGGTGATTTTATGACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033623XLOC_033623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053261-exon-scaffold_227-1491911889:262887..263411TCONS_00053261-exon-scaffold_227-1491911889:262887..263411Clytia hemisphaericaexon
TCONS_00053261-exon-scaffold_227-1510915933:262887..263411TCONS_00053261-exon-scaffold_227-1510915933:262887..263411Clytia hemisphaericaexon
TCONS_00053261-exon-scaffold_227-1575043694:262887..263411TCONS_00053261-exon-scaffold_227-1575043694:262887..263411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:262887..263411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112271	0	0.127119	0.497466	0.605617	0.119642	0.144343	0.545456	0.0946089	0.117188	0.349869	0.224316	0.672013	0.542805	0.319374	0.0685507	0	0.259831	1.19347	1.87332	0.219623	0.161058	0.130221	0.234065	0.122278	0.537899	0	0.165192	0	0.128338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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