|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053332 ID=TCONS_00053332|Name=TCONS_00053332|organism=Clytia hemisphaerica|type=transcript|length=1500bp GATaagaatcaataaaaaacaaattaaaaaataatgatatgAATGGTATT AACGATGAAGATGTTAACGCCAGAGACGAGGGTGGTGATGGCGGTGGTTG TGGCAGCGGTGGCGGTATTTTTGTTGATTCACCTTTAATTATAGATGTTG TTAACCATCATGCAGCTGACGACACCCATTCCATTGATaGTGAAAAAGCG CGAATGATTTCTGAGGAGATTGGTGATGAATCACGTGTTATGAAAAACAT TCTGAACGATTACCAAGGACGATTCTCAATTTTTCGTGACGGTATTCTAA AGTTGAAACATTATTATGATAcgCAAATGGTGTTAATCAAATCACACTTC CACAAGACGAATAGCGATGAAAGCTATCAAACTTCCCCGTCTTCAAAAGA TTTCTTTATCGGTAAAATTGTTCAAATCATGGAGTTAGCCCTCAAACAGA TCTTATCCTTGATGGACGCCAGCGATATGACAAGATCGTTTGCAGATGAG ACGATTGACGTCTTGGATCAGGACGTGGAAGGAGATATTGAAGTGACTGA ACCAAAAATTACTAAGaaattttctgtTGATGAGGAATCGCGTCAGGGAT CATCAATTGCAGCATACTATCTCCACAATTCGATATACCTTACGACACTG GTCAAGAAGATAATACAAACCAGCAGACCGTCGAACCTCAGCCACAAACG GTATCAAACTCTGAAGTTATCCCACCTCGATTGCCTTCAAATTCTGAAGT TATACCACCTCGATTGCCTTCAAACTCTGAACTTATGCCACCGCTTCAAA TAGGTGCAAGCTCAGCATCAACTTCCCAACAACATCATTTTGATTCGAAA AACCCAAAAAGTAACGACGTCGCAGACTCGAATAGATATAATCCAATTAT CCTTCAAGATGGTAGAAATAACTCCATAGCAACGGCTAATAATGATTACT TAGAATCCAATATGGCGGATTTTGGACTACTTCCTCCAGGGACTGGGGAA CAGTTTGTCTGTCCGTATTGTAAGTTTACCTTTACCACAAAACGAGACAT GGATCGACATTTGAGATCACATACCGGTGAAAAACCTTTTCATTGCGAGG TCTGCTCGAAATATTTTGCTCGTAAAGACTTTTTGACGAAACATAAATTA ACACATACTGGTGAAAAACCTTATTCGTGTGAACAATGCAATAAACGGTT TAGCCAacgatcaaatttgaataaacaCCTGCTCACACATACTAAGGAAC ATAAACACATTTGTAAGATCTGTCAACGTGGTTTTCATCAGATGATTAAT TTGCATCGCCATGAACAGATCCATTGCAATGTGTCCAAACAATTTCAATG TGTTTGGTGTACCAAGATGGCTTACCAAGGTCCTGATTGTTTTAAAACCT TCCTCGATAAACGTGAAGCTGCTAATGGCTGATTGGATTCATTGCGAATA AGTTTTGTTTGGTTTGCgagacaatttttcaaaaataattttattttcgc Run BLAST on NCBI transcript from alignment at scaffold_228:466014..472731- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053332 ID=TCONS_00053332|Name=TCONS_00053332|organism=Clytia hemisphaerica|type=transcript|length=6718bp|location=Sequence derived from alignment at scaffold_228:466014..472731- (Clytia hemisphaerica) GATAAGAATCAATAAAAAACAAATTAAAAAATAATGATATGAATGGTATT
AACGATGAAGATGTTAACGCCAGAGACGAGGGTGGTGATGGCGGTGGTTG
TGGCAGCGGTGGCGGTATTTTTGTTGATTCACCTTTAATTATAGATGTTG
TTAACCATCATGCAGCTGACGACACCCATTCCATTGATGTTAGTTTTTTT
TCGATAAACGATACTGAACAAGTGTATTTTGACACTTTGTCGTCTGATCT
CATTTTTTCAAAATCTGTACGTTTACACCCCCTTCTCACAGATCCGGTAG
GATATTTCCTCAACCAGTTGGGGTGAAAATAACGGACTGAAACTCCATAG
GGATTGATATTCCAATATTTCTTATGGCTGAGGATTTCTTTTGTTTTTAA
AGCTGAAAATTCAGTGGTGATGGGAGAAATAGCATTATACTTTTGCAGTG
ATGATTGGTTTATTTGATTATTTTCAGTGGGGACAAAAATTGAAATATAA
TTTTCCGGGGACGATATTTCGGCCAATTTTTCCAGTGGCAAGGGTTCCCA
GTGGTCATGTAAGAACGGGGTGTACGTTTGAGTTGCTCTTAAGACTTGAC
TTCGTTGCTTTATACTGTATTAGTATTATATAAGTTTCTCTGCACATACA
CGTTTTTTGGACCTACCCCGGTGGGCTGTAGGTCCTATAAATTAACCTCT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGCATTTTCGCTAAACGATATATTTTCTGACTGATTTTTTTCTCCT
CGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGC
TTGTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCTA
AAAACTAAGAAACATCTCAGAAACATGCTGAGGCTGAGAATGAGAAAATA
ACTATTTTAATTCAGTTTTTCTTAAGAACCTTCCAATTCAGCCTTCAATG
AGGCTGATTATGTCAAAAAGTTTAGAAACATGTAAGAAACATTTAAGGCT
CAAAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTT
TCTTAAAAAAAAAACAACGTGTATTCAAGACGGTAAGGAATAATGTGAAC
CTCAGATTTCAGAATGTTACTATACTAGTACTTAAAGTGAGAATTTGGAA
ATCTTAAGTTCAGCTTATATATCATCTTGAATATGCAAAACATTCTTTAG
CAAATAGTTCTTTACACCAAAAGTAAATTATTTTATTTCAATTGAGATTT
TTCATTTGTTTAGAGTGAAAAAGCGCGAATGATTTCTGAGGAGATTGGTG
ATGAATCACGTGTTATGAAAAACATTCTGAACGATTACCAAGGACGATTC
TCAATTTTTCGTGACGGTATTCTAAAGTTGAAACATTATTATGATACGGT
AAATAAAAAACAACTTCAGGAATCATTTTCCTCGCACGCATTCATATCTT
ATAGGCCATCATTCGCATTATTTTTCATTTTTTAAGGCCCGTTTAAAAGG
GTCAATCAGCGGTTTTATGAATTTCTTTACATTTAACATTTATAAAGGGT
CTATTTGTTTCACTTTTTATAAATGCTATAGATGTTATCTGCTAAAATTG
CTACAAAACTCCATGAAAACTTTCAAAATGATAGTAAATATTGCAGGTTT
TGTTGTCTGTCATCTTTAAGATCCTTGGTTGTGCTTTAAATTTTGAAAAT
TCACTTTCAATCCATTGTTTATTCATGGCTGTGTGGCTACACTATCCCAC
CATTATGAAAATAACTGCTATTTTGGTTTCAGATATAAACCCGTGCGTGG
AACAAGCTACAGTTTAACCTCTTCACTTCTCTAATTTTATTGGTTTAAAA
TCGGTATTCTGGCTAAGAAAACATCATTCAGTCTCACTTTAGATGCAATT
TTTACTATGGAGAAATTATAAACTTTGTTTTCCTTGCAGAAGTTTGAGGT
CTGTTGAGGTTTTTACTGCTTTTGCTGGTTGGGCGTTCGCAAGTTTATTT
ACAAAAAGTGCTACAGTTCTGGATAGAAAAAATCGAAATGAGTGCATTTA
TAGTAAATATAGCAAAAATAGCGATGAAACAAATAGGCCCAAAGAGAACC
TTGACTTGTAAGAACGGTTGTTATGGCTGCTAATCGAATATGATTACTTA
CCGGTATTATTCAAATTTCTGATGTTGATTATTTTCTACCAGTGTTGGAG
TGCAAGTCGTGATACTAGGCTCATTCTTCCTGATGGGAAAGACTGATTCC
AAGATACCAAAAAGAATAATATCTAGCGAGTGTTCTTTTGTCTTAGTGAA
GTATATAAAGAGGCTTTATCGTCTCAAAATCATAATTCACCAAAATTTCA
AAAATATGTAAAATACATTTTCCGTGTCCGAGGGAAAGCCTATTTTGACC
ACTATTTATCTACTTCCATTCATAGCAAATGGTGTTAATCAAATCACACT
TCCACAAGACGAATAGCGATGAAAGCTATCAAACTTCCCCGTCTTCAAAA
GATTTCTTTATCGGTAAAATTGTTCAAATCATGGAGTTAGCCCTCAAACA
GATCTTATCCTTGATGGACGCCAGCGATATGACAAGATCGTTTGCAGATG
AGACGATTGACGTCTTGGATCAGGACGTGGAAGGAGATATTGAAGTGACT
GAACCAAAAATTACTAAGGTAAATGCCTATTTTCCAGCATCTTTTTCTCT
CAGGTTCCCACTAATTTCCATACGATTTTTAAGTAAGCTATTCTTCATTT
AACAAATCGTTATGATAAATATTGCGGCTCTCTTTGATCTTCTTGAAGAA
ACGGGCAACGTACTAAAATAACAGACAGTAAAGATGGCATTCATTAATCT
TTATCTATTATTCATAATTTTCCTTTTTTTTTAGAAATTTTCTGTTGATG
AGGAATCGCGTCAGGGATCATCAAGTTAGTGTTTGTTTTATCTGATGGCG
GATTTGCGTTCGCCCACGCTAAAGCTCGAAAGGAGCGGGCCAATTTCCGA
TCGGAGAGGAATGATAGTCGGCCTTTGATGTGCCGCATCCCCATTCGGGT
TCAACTACCCTTGCACGTGAAGCTAAAAGTTTTTCGGTTGGACGTCCGCC
AATCGCCGAAAACGAGGGCTGGGTTGCCAGACCTCCCGCTGCAAAATCCT
TGACGTGGTCTCGCAAAATTCCGTAATCAAACCTTCTAGATGTTGAAAAT
TTTTCCGACCTTCAGAGTTTTAGCATGTCGGATGAAAATTTCTGTTCCTG
GGTGCCAGATAAGTGTTCGTTTCTTCACTATAAAAGGGGCTTTCTCAACG
TGGAGCTTTGGGTATAGAAATCTGATAAGGTCTAATATCAAATCGAATTT
TGAATCTTACTAATGTGATTTAGGATTGTGAAGTATTGTGTAGAATTTTC
ATCGACTAGCTTAACTTATGTATCGTTTCTGCTAGCTCAACTTTTCCCAC
CAATGATAAGTGCAGATGACAACACCCAGCAAGTCGCAAGCCAACAGCAT
CCCATCGGATTCCCAAACGCTAGTTGCAGCATACTATCTCCACAATTCGA
TATACCTTACGACACTGGTCAAGAAGATAATACAAACCAGCAGACCGTCG
AACCTCAGCCACAAACGGTATCAAACTCTGAAGTTATCCCACCTCGATTG
CCTTCAAATTCTGAAGTTATACCACCTCGATTGCCTTCAAACTCTGAACT
TATGCCACCGCTTCAAATAGGTGCAAGCTCAGCATCAACTTCCCAACAAC
ATCATTTTGATTCGAAAAACCCAAAAAGTAACGACGTCGCAGACTCGAAT
AGATATAATCCAATTATCCTTCAAGATGGTAGAAATAACTCCATAGCAAC
GGCTAATAATGATTACTTAGAATCCAATATGGCGGATTTTGGACTACTTC
CTCCAGGGACTGGGGAACAGTTTGTCTGTCCGTATTGTAAGTTTACCTTT
ACCACAAAACGAGACATGGATCGACATTTGAGATCACATACCGGTGAAAA
ACCTTTTCATTGCGAGGTCAGTAGAATTTTTCAGGTTTTGTTTAAGTTGG
ATGGCGATCCCTTACGCAAACTAAAAGTTTGCTTCCATGATAACGGAAGT
TACGTGTTCTTACGTTAAGATCCTTTTTGTCAACAATATTTTCCTAATGT
GCTGTAACTTAAAAAGACTTTAAAATACAATCTTTTTTATAATGTTAATA
ACTATAATTTTTGAAAATCACCAAAGTAATATCTTAGCCTAGAACAGCTC
AATTTCAAGAGAAATAAGGGTCATATTGTTAGAAAAAATGTCGTCGTTTT
GCATAAGATTCCCTTTCCAGCACTAAGATTCCACTGCCACTTTTCTATCT
CAGAAAAAGACCAGTTGAAGAATGTTTCGAATGTTTTCGTAAATAAACCC
AAGATTTTCCGTAACTTTAGAAGAAAACCCTTTCCAATCTCATGCTGGCT
CTCCCGGAAAAATAACAGAAAAACCCCGGAAAAGTTAGGAGAATTTTAGT
GTGAGGAAGGGAATCTTAGAAAATCTCCTTTACGACTTGTTCATGAACCA
CTTTCCAATGAAAAAGAATTTTCGAAAAATATCGTACTATAATGGACAAA
GTCAGCCTGAAACCCTAAAAATAAGAACTTGCGGATTATAACAATTTGAG
GATCAAAGTGCTGAAAAATATATAAAGATATTCTTGTTTCTTCTTTAGGT
CTGCTCGAAATATTTTGCTCGTAAAGACTTTTTGACGAAACATAAATTAA
CACATACTGGTGAAAAACCTTATTCGTGTGAACAATGCAATAAACGGTTT
AGCCAACGATCAAATTTGAATAAACACCTGCTCACACATACTAAGGTAAA
ATGTTCTGAAAATGGTTTTATCGGTCTCTAGGGCTAAGTCTTCAAAATAA
ACTGGGAGGATAAAACATTACCTAGAATTTGATAAACAGTAAATGAGTAA
TTGCCCGTTTATAAGGCTATTTACGGCGACAAAATGAAAGTTGACATTCC
GATGATTTTTTTGCATATTTTTAAGTAATGTGATACGTATCCTTGGATTT
TGAAAATTAAATTTTGGTCACTCAAAAATATTCTTTTTCAGGACCACAAA
CACATTTGTAAGATCTNGGATTTTGAAAATTAAATTTTGGTCACTCAAAA
ATATTCTTTTTCAGGAACATAAACACATTTGTAAGATCTGTCAACGTGGT
TTTCATCAGATGATTAATTTGCATCGCCATGAACAGATCCATTGCAATGT
GTCCAAACAATTTCAATGTGTTTGGTGTACCAAGATGGCTTACCAAGGTC
CTGATTGTTTTAAAACCTTCCTCGATAAACGTGAAGCTGCTAATGGCTGA
TTGGATTCATTGCGAATAAGTTTTGTTTGGTTTGCGAGACAATTTTTCAA
AAATAATTTTATTTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053332-exon-scaffold_228-1575043694:472544..472731 | TCONS_00053332-exon-scaffold_228-1575043694:472544..472731 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1575043694:470034..470168 | TCONS_00053332-exon-scaffold_228-1575043694:470034..470168 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1575043694:468764..469006 | TCONS_00053332-exon-scaffold_228-1575043694:468764..469006 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1575043694:468508..468547 | TCONS_00053332-exon-scaffold_228-1575043694:468508..468547 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1575043694:467416..467908 | TCONS_00053332-exon-scaffold_228-1575043694:467416..467908 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1575043694:466587..466733 | TCONS_00053332-exon-scaffold_228-1575043694:466587..466733 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1575043694:466014..466267 | TCONS_00053332-exon-scaffold_228-1575043694:466014..466267 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1510915933:472544..472731 | TCONS_00053332-exon-scaffold_228-1510915933:472544..472731 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1510915933:470034..470168 | TCONS_00053332-exon-scaffold_228-1510915933:470034..470168 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1510915933:468764..469006 | TCONS_00053332-exon-scaffold_228-1510915933:468764..469006 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1510915933:468508..468547 | TCONS_00053332-exon-scaffold_228-1510915933:468508..468547 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1510915933:467416..467908 | TCONS_00053332-exon-scaffold_228-1510915933:467416..467908 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1510915933:466587..466733 | TCONS_00053332-exon-scaffold_228-1510915933:466587..466733 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1510915933:466014..466267 | TCONS_00053332-exon-scaffold_228-1510915933:466014..466267 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1491911889:472544..472731 | TCONS_00053332-exon-scaffold_228-1491911889:472544..472731 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1491911889:470034..470168 | TCONS_00053332-exon-scaffold_228-1491911889:470034..470168 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1491911889:468764..469006 | TCONS_00053332-exon-scaffold_228-1491911889:468764..469006 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1491911889:468508..468547 | TCONS_00053332-exon-scaffold_228-1491911889:468508..468547 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1491911889:467416..467908 | TCONS_00053332-exon-scaffold_228-1491911889:467416..467908 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1491911889:466587..466733 | TCONS_00053332-exon-scaffold_228-1491911889:466587..466733 | Clytia hemisphaerica | exon |
TCONS_00053332-exon-scaffold_228-1491911889:466014..466267 | TCONS_00053332-exon-scaffold_228-1491911889:466014..466267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_228 | supercontig | scaffold_228:466014..472731 - |
Blast
BLAST of TCONS_00053332 vs. Swiss-Prot (Human)
Match: FEZF2 (Fez family zinc finger protein 2 OS=Homo sapiens GN=FEZF2 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 6.124e-23 Identity = 55/155 (35.48%), Postives = 79/155 (50.97%), Query Frame = 2
Query: 914 RNNSIATANNDYLESNMADFGLLPPGTGEQFVCPYCKFTFTTKRDMDRHLRSHTGEKPFHCEVCSKYFARKDFLTKHKLTHTGEKPYSCEQCNKRFSQRSNLNXXXXXXXXXXXXICKICQRGFHQMINLHRHEQIHCNVSKQFQCVWCTKMAYQ 1378
+ NS TA ++ + G G + F C C F ++ RH+ HTG +PF C+VC K F + L +HK+ HT EKP+ C QC K F++ S LN H+ H +C+ C +GFHQ N H+ H KQ++C C K +Q
Sbjct: 247 KENSALTAERGGVKGHSKLPGGSADGKPKNFTCEVCGKVFNAHYNLTRHMPVHTGARPFVCKVCGKGFRQASTLCRHKIIHTQEKPHKCNQCGKAFNRSSTLNTHIRIHAGYKPFVCEFCGKGFHQKGNYKNHKLTHSG-EKQYKCTICNKAFHQ 400
The following BLAST results are available for this feature:
|