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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053376 ID=TCONS_00053376|Name=TCONS_00053376|organism=Clytia hemisphaerica|type=transcript|length=3873bp
ACATAGAGACATTTTGCACCGTTCATGAAAACCATTACAAGCCTTGGAAG
AGAATACTGTATGACTCAAAAGAGATCCTACCTtgcaaaactaaaaattg
aaaaaaaaaacgggaaAAAATGAATacgaaaaacaagaaaaaataataat
tgaaaaacaaaaggaaaaaagTTTATCACTCCTATTGTTGATataatcaa
aacaatttttccccagttttttattgttctttttaacATATCCCTGGTAT
CGTTGCCAAGAGATGATCTTGAAAGTCCTACAAGAATGAACTTTACAAGA
TCCCGTTCTTTGTAAACTTTACACGATCAATAAATAAAAGGATTCTATAA
ATAATCGCGCGCAATCCTTTTTTATCGTTTGAGGAATCAAAATGCGAATC
ATTTTCTCAATTCGTTGCCAATCAACcaaactttttcatctttcCCTTTT
TCTAAATTCTTCGTTGGAAATAACTCACTAAACAAGTGCCCTAGGTAATG
AAGTTCTTTATGCGTTCCGTAACTAAAAAAAACTAGTAGTAAATCTGGTA
ATTATCATATAAAAGGATGACTCATTTCTAAACCCTTCAACCTGTTGGAA
AACTTGTCACGATTTTATGGGACATTTCTCCCCCTAAAATAATTGTTGAT
ATGAGAATGATGACTTTCGAGCCAAAAGTAAAGTGTTAATATTAGGCGCT
TTTGATGCTTGCCACAATTTCATTAGCTGTAATCATGAAAGTTTCTTTGA
AAACACCTGTCTGGTGACACGGTGATAGCTTTaatcaaacaaacaaaaca
aaaaggaagCATTGAACTCAGGTCTTCAAAAATTGAGTCCCCTGATAGCT
ATGGTACTCCTTCCAAAAGTTTCTACCAAACCCTCTACGTCTTCAATGCA
AACAACTATCAAGACCAAACCAAACCAGCAAACCGAGCCAGTGCGTTGTC
TTTACAGTGACAGAAATCACGACAAGGAAAGAGAGAGAGTCGCACCAAAC
GGAGTAAAATGAAGATATTTAGCACAAAAATTTATGATGATACAGTATCA
ATAGTTTAAGAGTAAGGAGAGAGGAGAGAAAGATTATTAGATGCACAGCT
GTACCAATGACAAATAAACCTCCAGTAAGCAAATGTTTGGAAGGTTTTTA
AGTTCGTTCGTTTAAACTTTAATAGATTTTTATTGTGTGTATTGGATTAA
GAATGATGTTTGGGCTAGTATAATCACCTGTGCAATACTGTAAACTTTCC
GATGATATCGAGTTTGTATAAAATACTTACCGAATCTGTATTACACCGAA
GTTAAGCATCAAGGTCAAAAAGGTCAACGAGAGTACTAGTATACAAATTT
GTTTGGAatattggttgaaaaaagtcTGACGCCTCTCTGATACCTCAAAT
TTATTGATTGTATGATTGATACAGTAAAGGTATTACatgcattttttata
agaatggtctttttttcgtttcatgatggatattcttaactttttgggta
aaatcatcctaaaatattcgtACGATATATCCAACCTAACCTAATTCTAG
CATGAAATACATACCTTGAGCAAGATTTGGCAATTTTGTGAAAGTTAATT
GCATTGCTGGagaataattggcaatttacaggtAGAATTCTCTAAAAATT
TGGATTCTTAGGTTAAGTTAGCCAAATTCTATGACGGTATTATTCTTAGC
ACACTCTTAAGTATTTGGCCGATTTCaccatgaatattcttataaattat
ATTCTTATACATGTTTGGAAGATACACACGGTGCCCATTCCAATCTCAGG
AACGATAAGgaccaatccccatcgagtttaagtccgttatttttgcactc
actggctgaaaaaatataGCCGGGAGGACCTAAACAGATTTCGGCTCTTG
AAAAGAGATTACCAAAATTATGCCACATTTAATTTCGTTAAAGCCTTCTT
TTCCTCGATTTGTCTCGGAATACTGTCTGAGTCTGGTGTTACTCAATAAT
ATATTCCTTTGTACTGCCTCCCAAACCTTTTCTTAAACTTTCTCCAAAGT
AACTGTGTGCAAAGACATCAGTCAAATTTCTACACATATATAATATTTCG
ATGATTAAGCTAGACCCCATCAAGATATACTTTCAAAAGTATGaacaatt
ttcaattaaattgcAATAGCTACCGATTTCATGAGGAGCTGCTTAACAAC
AACAAATCATTGCCACACTAATACACTTTCTCTATCAGAGTTTCTAAGGG
TAGCCAACTCATCAAACATTTTTGTCGAGGATTAAAAACACAAACCCAAT
TATCAGAAAATCTGAAAACCATCACAAAAAAGAATTACTTTATATACTAT
TATATCAATCCATGATTTATTCAGATCCCTCATAGGATACACCAGATGGA
TTAAATATCATCAAAAAGTAAGCTGAATATCGAAATACAACAAAATAAGG
AGTACATCTTAGGTCAAATCTTGGTCAAATTGTTTATAAAAATAACAGAA
CGCTTCTTTTAGCTTACATTACCTATCAATTGTAATTTATTTACTTTGCA
AGGCAAGGTCATCGTAAATGGGAGATAGAGTTCATGAGTTATCATAATAC
CAAGAAAATAACTCGACATCTTTGAAAGCTTTTGATGGATCAGAATCTCA
CCGGTAGAGTCGATATTTTTTTAGGTGGATAGCcaagtaatctaggactt
ttaggcagtttttcaattgttttcacggggtccccGGCCAGCCGGCTTGG
CTATTTATGAACTGAGCAGAACATTGTAAGAAGCGGGGATTTGAATCGCC
tatgaccacttggccatcgctccggTGCGAAGACATTTTGATGATATATG
TAAAACACTGACTAAGGCTAGGCTGCTGGTATCCAACAAAAGGATTTCTG
CTCCTATATAaactacctgcggttttgtagaggccCGTGATTCAGACGCC
TTTTGAGGTCTGGCACTAGCGCCAATAGAAAAATCGTCTTTGAGAAAAAC
ACCATCGCAAGGCGGTGCGCGCGCATGATCGTGCACGCTCGAGAAGGTGG
GGTTTTTTTGAAGATCagtcgaactttaaattctaagGCAATAACCTGAC
AGTGACTTTGggagtaatttttcaaatagaaCTGTCTgcagaaaagaaaa
acagtcCATCATGGTGCTAATCTCAAAGCAAACAAAGTAGAAGACGAAAC
GTCAAACCATCGTCAGTAACGTAAGTCAAAGGAACGTCATTCTAAAGTAC
ATAACGCCCCCCAAAGTTAGGCGACCATAAAAAACAACACCCTGTGTCCG
CTAGAAGTATCAATTTAAAACTCCAAAGCGAATCCTCGAAATCCATCCAT
GNGCTAGAAGTATCAATATTTAAAACTCCAAAGCGAATCCTCGAAATCCA
TCATTAATATAAGTCACAAATAAGACACTTTGATacaggaaaaatttaaa
accttttttttggTTTGCCACGTTTAGTAACCACATAACGAGGTGCTACT
AAAGGGATTTGTTCAGGGGAATGGAACTAGGAATAATAAAGATCTTAAAT
TACAAGAAGGATTTCTGTGTAACGGTGATATACAACTCCTTATCTGATAA
TAAAAAgtggaacaaaacaaaaagtgaaTCCTCATACTTTGTGTCAATCG
TCAGGACCATATCCCTCTAGTAACCCAGGGCCATTTGCACCTCTTTTTGT
ATCTTAACCACAgatttatattatattatattatatatgtcgtgctttaa
gccatcgcaggcaaaaaaaattgaatatcgaaaaaaatattgttgctatt
gttttcgaaaacccgcgaagcttctgattggtcaagcgctgaaattctat
tgtaatatcacCTGATCTAGGTA Run BLAST on NCBI transcript from alignment at scaffold_228:574804..578676 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053376 ID=TCONS_00053376|Name=TCONS_00053376|organism=Clytia hemisphaerica|type=transcript|length=3873bp|location=Sequence derived from alignment at scaffold_228:574804..578676 (Clytia hemisphaerica)
TACCTAGATCAGgtgatattacaatagaatttcagcgcttgaccaatcag
aagcttcgcgggttttcgaaaacaatagcaacaatatttttttcgatatt
caattttttttgcctgcgatggcttaaagcacgacatatataatataata
taatataaatcTGTGGTTAAGATACAAAAAGAGGTGCAAATGGCCCTGGG
TTACTAGAGGGATATGGTCCTGACGATTGACACAAAGTATGAGGAttcac
tttttgttttgttccacTTTTTATTATCAGATAAGGAGTTGTATATCACC
GTTACACAGAAATCCTTCTTGTAATTTAAGATCTTTATTATTCCTAGTTC
CATTCCCCTGAACAAATCCCTTTAGTAGCACCTCGTTATGTGGTTACTAA
ACGTGGCAAAccaaaaaaaaggttttaaatttttcctgtATCAAAGTGTC
TTATTTGTGACTTATATTAATGATGGATTTCGAGGATTCGCTTTGGAGTT
TTAAATATTGATACTTCTAGCNCATGGATGGATTTCGAGGATTCGCTTTG
GAGTTTTAAATTGATACTTCTAGCGGACACAGGGTGTTGTTTTTTATGGT
CGCCTAACTTTGGGGGGCGTTATGTACTTTAGAATGACGTTCCTTTGACT
TACGTTACTGACGATGGTTTGACGTTTCGTCTTCTACTTTGTTTGCTTTG
AGATTAGCACCATGATGgactgtttttcttttctgcAGACAGttctattt
gaaaaattactccCAAAGTCACTGTCAGGTTATTGCcttagaatttaaag
ttcgactGATCTTCAAAAAAACCCCACCTTCTCGAGCGTGCACGATCATG
CGCGCGCACCGCCTTGCGATGGTGTTTTTCTCAAAGACGATTTTTCTATT
GGCGCTAGTGCCAGACCTCAAAAGGCGTCTGAATCACGggcctctacaaa
accgcaggtagttTATATAGGAGCAGAAATCCTTTTGTTGGATACCAGCA
GCCTAGCCTTAGTCAGTGTTTTACATATATCATCAAAATGTCTTCGCAcc
ggagcgatggccaagtggtcataGGCGATTCAAATCCCCGCTTCTTACAA
TGTTCTGCTCAGTTCATAAATAGCCAAGCCGGCTGGCCggggaccccgtg
aaaacaattgaaaaactgcctaaaagtcctagattacttgGCTATCCACC
TAAAAAAATATCGACTCTACCGGTGAGATTCTGATCCATCAAAAGCTTTC
AAAGATGTCGAGTTATTTTCTTGGTATTATGATAACTCATGAACTCTATC
TCCCATTTACGATGACCTTGCCTTGCAAAGTAAATAAATTACAATTGATA
GGTAATGTAAGCTAAAAGAAGCGTTCTGTTATTTTTATAAACAATTTGAC
CAAGATTTGACCTAAGATGTACTCCTTATTTTGTTGTATTTCGATATTCA
GCTTACTTTTTGATGATATTTAATCCATCTGGTGTATCCTATGAGGGATC
TGAATAAATCATGGATTGATATAATAGTATATAAAGTAATTCTTTTTTGT
GATGGTTTTCAGATTTTCTGATAATTGGGTTTGTGTTTTTAATCCTCGAC
AAAAATGTTTGATGAGTTGGCTACCCTTAGAAACTCTGATAGAGAAAGTG
TATTAGTGTGGCAATGATTTGTTGTTGTTAAGCAGCTCCTCATGAAATCG
GTAGCTATTgcaatttaattgaaaattgttCATACTTTTGAAAGTATATC
TTGATGGGGTCTAGCTTAATCATCGAAATATTATATATGTGTAGAAATTT
GACTGATGTCTTTGCACACAGTTACTTTGGAGAAAGTTTAAGAAAAGGTT
TGGGAGGCAGTACAAAGGAATATATTATTGAGTAACACCAGACTCAGACA
GTATTCCGAGACAAATCGAGGAAAAGAAGGCTTTAACGAAATTAAATGTG
GCATAATTTTGGTAATCTCTTTTCAAGAGCCGAAATCTGTTTAGGTCCTC
CCGGCtatattttttcagccagtgagtgcaaaaataacggacttaaactc
gatggggattggtcCTTATCGTTCCTGAGATTGGAATGGGCACCGTGTGT
ATCTTCCAAACATGTATAAGAATataatttataagaatattcatggtGAA
ATCGGCCAAATACTTAAGAGTGTGCTAAGAATAATACCGTCATAGAATTT
GGCTAACTTAACCTAAGAATCCAAATTTTTAGAGAATTCTacctgtaaat
tgccaattattctCCAGCAATGCAATTAACTTTCACAAAATTGCCAAATC
TTGCTCAAGGTATGTATTTCATGCTAGAATTAGGTTAGGTTGGATATATC
GTacgaatattttaggatgattttacccaaaaagttaagaatatccatca
tgaaacgaaaaaaagaccattcttataaaaaatgcatGTAATACCTTTAC
TGTATCAATCATACAATCAATAAATTTGAGGTATCAGAGAGGCGTCAgac
ttttttcaaccaatatTCCAAACAAATTTGTATACTAGTACTCTCGTTGA
CCTTTTTGACCTTGATGCTTAACTTCGGTGTAATACAGATTCGGTAAGTA
TTTTATACAAACTCGATATCATCGGAAAGTTTACAGTATTGCACAGGTGA
TTATACTAGCCCAAACATCATTCTTAATCCAATACACACAATAAAAATCT
ATTAAAGTTTAAACGAACGAACTTAAAAACCTTCCAAACATTTGCTTACT
GGAGGTTTATTTGTCATTGGTACAGCTGTGCATCTAATAATCTTTCTCTC
CTCTCTCCTTACTCTTAAACTATTGATACTGTATCATCATAAATTTTTGT
GCTAAATATCTTCATTTTACTCCGTTTGGTGCGACTCTCTCTCTTTCCTT
GTCGTGATTTCTGTCACTGTAAAGACAACGCACTGGCTCGGTTTGCTGGT
TTGGTTTGGTCTTGATAGTTGTTTGCATTGAAGACGTAGAGGGTTTGGTA
GAAACTTTTGGAAGGAGTACCATAGCTATCAGGGGACTCAATTTTTGAAG
ACCTGAGTTCAATGcttcctttttgttttgtttgtttgattAAAGCTATC
ACCGTGTCACCAGACAGGTGTTTTCAAAGAAACTTTCATGATTACAGCTA
ATGAAATTGTGGCAAGCATCAAAAGCGCCTAATATTAACACTTTACTTTT
GGCTCGAAAGTCATCATTCTCATATCAACAATTATTTTAGGGGGAGAAAT
GTCCCATAAAATCGTGACAAGTTTTCCAACAGGTTGAAGGGTTTAGAAAT
GAGTCATCCTTTTATATGATAATTACCAGATTTACTACTAGTTTTTTTTA
GTTACGGAACGCATAAAGAACTTCATTACCTAGGGCACTTGTTTAGTGAG
TTATTTCCAACGAAGAATTTAGAAAAAGGgaaagatgaaaaagtttgGTT
GATTGGCAACGAATTGAGAAAATGATTCGCATTTTGATTCCTCAAACGAT
AAAAAAGGATTGCGCGCGATTATTTATAGAATCCTTTTATTTATTGATCG
TGTAAAGTTTACAAAGAACGGGATCTTGTAAAGTTCATTCTTGTAGGACT
TTCAAGATCATCTCTTGGCAACGATACCAGGGATATgttaaaaagaacaa
taaaaaactggggaaaaattgttttgattatATCAACAATAGGAGTGATA
AActtttttccttttgtttttcaattattattttttcttgtttttcgtAT
TCATTTTttcccgttttttttttcaatttttagttttgcaAGGTAGGATC
TCTTTTGAGTCATACAGTATTCTCTTCCAAGGCTTGTAATGGTTTTCATG
AACGGTGCAAAATGTCTCTATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053376-exon-scaffold_228-1491911889:574804..578676 | TCONS_00053376-exon-scaffold_228-1491911889:574804..578676 | Clytia hemisphaerica | exon |
| TCONS_00053376-exon-scaffold_228-1510915933:574804..578676 | TCONS_00053376-exon-scaffold_228-1510915933:574804..578676 | Clytia hemisphaerica | exon |
| TCONS_00053376-exon-scaffold_228-1575043694:574804..578676 | TCONS_00053376-exon-scaffold_228-1575043694:574804..578676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:574804..578676 . |
Blast
The following BLAST results are available for this feature:
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