|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053383 ID=TCONS_00053383|Name=TCONS_00053383|organism=Clytia hemisphaerica|type=transcript|length=712bp
TAGTGTTTAAAGAAAATGTCATGATATTTTCAACTTGTTTCCGCTTGCGA
TTTCCAAGGAGTCAAAAATGCTTTGATTTCCTTTGCAATGTCTCGTAGCA
TTAACAAATTGACCAAATAGAAAAATCCACAACCTAATTTCACAATCAAT
AATGTTTCTGAAAACAACAGTTTATACAATAAGAATGGTCCAAGGATGAA
TCTTAGCGGTATGAAAAATACAACATACGCCACTCGAGCTGCAATAatcc
attttgatttctttaattCTGGTTTATCAAACACGTGGAATACCCAGAAT
GCACAGGGCGTTGTGAATTCGCCTAACCATAAACATAACAAAATATCAAA
GCCACATCTCTGGTTATACCATATAGTTAACGTGATCAAAAAACTTAATA
CGTGATGAAGGAACATGTACCAAGCTTCCCCAAGTTTAATACTCAATGGC
AAATCGTATAAGAAATAACCAGCGCTTACAGCAACTATTAGATTCTCTTG
CCAAGTCACTGCATCTCCTATACGACTCATATCCAGCATTTCAGGATTGG
TGTAAAAATACCATTCTATTGAACGCACCACGCCAACACCATAAATGCCA
TACACCAAATTAGAACTGTCCCAGAAAGTGAAACCCAATAATTTGTAAAA
GAATTGAAGTAATACAAAACATCCAAATGCTGATGCCAGAATCACATACA
TTTTGTTTTAAT Run BLAST on NCBI protein sequence of TCONS_00053383-protein >TCONS_00053383-protein ID=TCONS_00053383-protein|Name=TCONS_00053383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MYVILASAFGCFVLLQFFYKLLGFTFWDSSNLVYGIYGVGVVRSIEWYFY
TNPEMLDMSRIGDAVTWQENLIVAVSAGYFLYDLPLSIKLGEAWYMFLHH
VLSFLITLTIWYNQRCGFDILLCLWLGEFTTPCAFWVFHVFDKPELKKSK
WIIAARVAYVVFFIPLRFILGPFLLYKLLFSETLLIVKLGCGFFYLVNLL
MLRDIAKEIKAFLTPWKSQAETS Run BLAST on NCBI transcript from alignment at scaffold_228:654972..655683 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053383 ID=TCONS_00053383|Name=TCONS_00053383|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at scaffold_228:654972..655683 (Clytia hemisphaerica)
ATTAAAACAAAATGTATGTGATTCTGGCATCAGCATTTGGATGTTTTGTA
TTACTTCAATTCTTTTACAAATTATTGGGTTTCACTTTCTGGGACAGTTC
TAATTTGGTGTATGGCATTTATGGTGTTGGCGTGGTGCGTTCAATAGAAT
GGTATTTTTACACCAATCCTGAAATGCTGGATATGAGTCGTATAGGAGAT
GCAGTGACTTGGCAAGAGAATCTAATAGTTGCTGTAAGCGCTGGTTATTT
CTTATACGATTTGCCATTGAGTATTAAACTTGGGGAAGCTTGGTACATGT
TCCTTCATCACGTATTAAGTTTTTTGATCACGTTAACTATATGGTATAAC
CAGAGATGTGGCTTTGATATTTTGTTATGTTTATGGTTAGGCGAATTCAC
AACGCCCTGTGCATTCTGGGTATTCCACGTGTTTGATAAACCAGaattaa
agaaatcaaaatggatTATTGCAGCTCGAGTGGCGTATGTTGTATTTTTC
ATACCGCTAAGATTCATCCTTGGACCATTCTTATTGTATAAACTGTTGTT
TTCAGAAACATTATTGATTGTGAAATTAGGTTGTGGATTTTTCTATTTGG
TCAATTTGTTAATGCTACGAGACATTGCAAAGGAAATCAAAGCATTTTTG
ACTCCTTGGAAATCGCAAGCGGAAACAAGTTGAAAATATCATGACATTTT
CTTTAAACACTA Coding sequence (CDS) from alignment at scaffold_228:654972..655683 >TCONS_00053383 ID=TCONS_00053383|Name=TCONS_00053383|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_228:654972..655683 (Clytia hemisphaerica)
ATGTATGTGATTCTGGCATCAGCATTTGGATGTTTTGTATTACTTCAATT
CTTTTACAAATTATTGGGTTTCACTTTCTGGGACAGTTCTAATTTGGTGT
ATGGCATTTATGGTGTTGGCGTGGTGCGTTCAATAGAATGGTATTTTTAC
ACCAATCCTGAAATGCTGGATATGAGTCGTATAGGAGATGCAGTGACTTG
GCAAGAGAATCTAATAGTTGCTGTAAGCGCTGGTTATTTCTTATACGATT
TGCCATTGAGTATTAAACTTGGGGAAGCTTGGTACATGTTCCTTCATCAC
GTATTAAGTTTTTTGATCACGTTAACTATATGGTATAACCAGAGATGTGG
CTTTGATATTTTGTTATGTTTATGGTTAGGCGAATTCACAACGCCCTGTG
CATTCTGGGTATTCCACGTGTTTGATAAACCAGaattaaagaaatcaaaa
tggatTATTGCAGCTCGAGTGGCGTATGTTGTATTTTTCATACCGCTAAG
ATTCATCCTTGGACCATTCTTATTGTATAAACTGTTGTTTTCAGAAACAT
TATTGATTGTGAAATTAGGTTGTGGATTTTTCTATTTGGTCAATTTGTTA
ATGCTACGAGACATTGCAAAGGAAATCAAAGCATTTTTGACTCCTTGGAA
ATCGCAAGCGGAAACAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053383-exon-scaffold_228-1491911889:654972..655683 | TCONS_00053383-exon-scaffold_228-1491911889:654972..655683 | Clytia hemisphaerica | exon |
| TCONS_00053383-exon-scaffold_228-1510915933:654972..655683 | TCONS_00053383-exon-scaffold_228-1510915933:654972..655683 | Clytia hemisphaerica | exon |
| TCONS_00053383-exon-scaffold_228-1575043694:654972..655683 | TCONS_00053383-exon-scaffold_228-1575043694:654972..655683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:654972..655683 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006634 | TLC-dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
