TCONS_00053399 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053399
Unique Name	TCONS_00053399
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1147

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_23:149165..153754+
coding sequence from alignment at scaffold_23:149165..153754+

transcript sequence

>TCONS_00053399 ID=TCONS_00053399|Name=TCONS_00053399|organism=Clytia hemisphaerica|type=transcript|length=1147bp
ATGCACCATTCTCTTTGACAGTCatctttattcaatttttcagtACAAAG
CCCTGGTTTAGCATTTTACGTTGTTGGAGAATCCAGCATTGGTAAAGAGA
TAATGAATGCTTTGATGCCGTCATGGTCTGTCTTTGCTCTGCTGCTGGTC
CTTGTGGCTATCTCTGGTTCTATATATGCTCTAATTGAGATGATTAGTCT
CTCTCTGGATGGTGAAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAG
GAATTTGGTGGGCCTTTGTTTCCATGACTACAGTTGGATACGGCGATATA
TGTCCAAAGACGAAACCTGGTCGTATATTCAGCATTGTATGGGTGATCAC
AGGAGTTGCAAGCTGTGCATTATTCACGTCCTACATGACGACGGTTTTGA
CGTCCATTTGTATGACGGAAGACGTGTCTCTGACGGCAACCAAgGTTGGC
GTCCTAACTGAAAGCGAAGAACATCGGTTTGCCATGAAACGAAATTCAAT
GCCTCAAGCATTTCCAACGATAAATGAAGTCATAGATGCTTTAAAACGCC
GTGAAGTTCGTGGTATCTTAATCGATAGTTACATAGCAGCCGAATATGAA
GAACAACTGAAATCGTTCAAGAGACAAATGGTCATTGAATATATCACAAG
TTATGGTGTGGTGTTTTTAAACGAAGGTGTTCGCTTCTCAGATTGTGTGC
GAGATTATGTGTTTTCAAGACAGAATGAAATATCAGAGATTATACGACAG
AACGTACAATTATTAGAGGTTTCCACGACGAGTGCTGCAGCAGAGAAATC
GAACAATTTGATTGATGTTAAGAGTCCTTCATTTTTCTATATCGTAACTG
GTGTGATTGGAATATTAGTAGTGGCAGCTTTCTTTGGCACGATATGGGAT
ATTAGAAAAAGACAAATGGAAAAACtgaagAAGTACAACCCCCACGAAGA
TATTTCTCTGTCCGAATGGCGTGCACGTTATAAATGTGACTTTCAACAGG
TGTTGGAAGATATGCAAGGAGAATGTACAAGCATAAGTGATAAATGTACT
TCTATACTGAAACAACTTCAAAGTAGTAATGGGATTGTATGTTTACGGAA
AAAACGTTCGGATGATATGAGGATTGAGTATGACTACTAGTCCAAAC

Run BLAST on NCBI

protein sequence of TCONS_00053399-protein

>TCONS_00053399-protein ID=TCONS_00053399-protein|Name=TCONS_00053399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MNALMPSWSVFALLLVLVAISGSIYALIEMISLSLDGEEYPAFHQGVWAG
IWWAFVSMTTVGYGDICPKTKPGRIFSIVWVITGVASCALFTSYMTTVLT
SICMTEDVSLTATKVGVLTESEEHRFAMKRNSMPQAFPTINEVIDALKRR
EVRGILIDSYIAAEYEEQLKSFKRQMVIEYITSYGVVFLNEGVRFSDCVR
DYVFSRQNEISEIIRQNVQLLEVSTTSAAAEKSNNLIDVKSPSFFYIVTG
VIGILVVAAFFGTIWDIRKRQMEKLKKYNPHEDISLSEWRARYKCDFQQV
LEDMQGECTSISDKCTSILKQLQSSNGIVCLRKKRSDDMRIEYDY

Run BLAST on NCBI

transcript from alignment at scaffold_23:149165..153754+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053399 ID=TCONS_00053399|Name=TCONS_00053399|organism=Clytia hemisphaerica|type=transcript|length=4590bp|location=Sequence derived from alignment at scaffold_23:149165..153754+ (Clytia hemisphaerica)
ATGCACCATTCTCTTTGACAGTCatctttattcaatttttcagtACAAAG
CCCTGGTTTAGCATTTTACGTTGTTGGAGAATCCAGCATTGGTAAAGAGA
TAATGAATGCTTTGATGCCGTCATGGTCTGTCTTTGCTCTGCTGCTGGTC
CTTGTGGCTATCTCTGGTTCTATATATGCTCTAATTGTAGGTAGCTTTTT
CACCCTCGATTAAAATCACAACTTTGACCTGTTGTCGAGTGTGACGATAG
TGTATATTGCCAAGTTAAATTATATTCCTGTATCATAATAAGCTCTTTAA
TCAAAGAGGTCTCATTTTTTTAGtaacttcttttcaatatagtCATACTC
CATTCGATGATAACAATCACTTTATGTTGAAtttaactttgaaaaattgt
caatttttcccTTATTTGGGGGTTACGAGTTTTGCGAATAACGTCATAGT
TTCTGGCCGCAAAAACTTTTGCCAGGCCTAATTCGCGGGTCCCTTAcctc
tcaaaaaagtctcaatatcctttcgaaccaatcacatgAGATTGCGTCCT
AAGAAAGACGCTAGCATCCTAAAGGTTGGCCACCTACCAATACAAAactt
tttagagatttttccCCATTCTTCCATATAGAACTCGTAGACTGGCCTTA
GTAAAGCACAGCAATCTGATGTCTTGTTAGCTTTGGTCTGAATCTCTCTT
TGTTTGACTTGATCATTTGACTTGCTTTCAGGAGATGATTAGTCTCTCTC
TGGATGGTGAAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAGGAATT
TGGTGGGCCTTTGTTTCCATGACTACAGTTGGGTGAGTTAATTAAGTTAC
ATTCTTGAGTTATAGTTTTTTAGTAGAAGTGTGGAGTCTTTTCACCTTTT
CACCACAAGATAATTTCTGACTTATACTTTTGTTTTTACAAAAGTAAATA
TTCCACAGATTGAACTTTAACTTAAAACATATTTTCTAGTTCTTGTAATC
AATAATTTAGTTGAAATTGGCGTTGGAGTTGGTTCTGGCGGAACCAGCAC
TTTAAAATAGCAATCAAATAAAGCTTCcatattttcggaaaaaagtagGG
GGAGGGGTATTTAATCgaatttgaaaatccaaaatgcATTTTGAGACTAA
AACCCACATCAAAGAATGAAAGACTTGAGACCTGAAACTTTCATTTCTAG
ATACGGCGATATATGTCCAAAGACGAAACCTGGTCGTATATTCAGCATTG
TATGGGTGATCACAGGAGTTGCAAGCTGTGCATTATTCACGTCCTACATG
ACGACGGTTTTGACGTCCATTTGTATGACGGAAGACGTGTCTCTGACGGC
AACCAAggtaaaaacaacaaataacACTCCATTCACAcactaaaaatttg
tttttattcgAACTCTTGAGCATTGATTTCCTTTGAGCTGTTTGGTCAac
ctttttgtaaaaaagtttctttataaTTGTTGAATGATGGCCGATTGGTT
TGAAGTGCCGACTGTTCCTTTCAGTCTAAGGAAAGCACAAAAGATTCACA
AAGGATATTGGGAAAACAACCAAAAGTCGGCGAGTCCAAGAATACTGCAC
TATTCACGGCAAAATATCGATTGCATCAGACAGCTTTAGAGAGTAAATAG
AAAAAAGCGGTTAAATAAAGTTCAGAAAGAGGCGTCTGTTATGAAGGAAC
GCCCTCTTTAAACCTTTTGAATCTCCTTTCCCAATTTCTTTTAGGTTGGC
GTCCTAACTGAAAGCGAAGAACATCGGTTTGCCATGAAACGAAATTCAAT
GCCTCAAGGTAATCCTTCCTTATTTCCCGAAAGAGCCAAAGGCGTTCAAA
AGAGTTCAATATAGgtcatttaaagattttgagagTTTTAAAAGGATTTC
TGAGTTTTCTAAAACAAGCTACAATGGTGGAACAAAGGtttgtaaaactt
ttaaaaaaatcccTAAAAGTGTCAATCTTTTTCACACTTGGGGAAATTCA
TTGGCAGAAAATATCAATATGCTTGCCAGGAGTCCTTATGACTTCAGTCC
GTATGATTTTTGGACTTCCAAGACTTCCAAGGACTGAAAATGGGTGAACC
TCGGCCACACAGATTGTAGGTGCACCAGAGAGCTCTGAAAAGTTGTTTTT
CATGAAGGAACCTCCTCAAATATGGTCTAGTTAGTTGTTTTCTCGAAGGA
GATGAAGAGGAAAACTCGTCGAGTCTTCAATCTCAGACCAAAAAAGGCCT
GAAGGTGACGACATTCATTTCCTTCAATATTGTGTGGATCAAAAAAACAT
CATTGGCTTTATTTCatggatttttgaaaagtctacaatCTTTTGCCCAT
GGTTGTAGCTATGAAAGTTGCACCGTCTTTTAACCTCTGTTGGGCAAATC
AATATATTTGTAGCATTTCCAACGATAAATGAAGTCATAGATGCTTTAAA
ACGCCGTGAAGTTCGTGGTATCTTAATCGATAGTTACATAGCAGCCGAAT
ATGAAGAACAACTGAAATCGTTCAAGAGACAAATGGTCATTGAATATATC
ACAAGTTATGGTGTGGTGTTTTTAAACGAAGGTGTTCGCTTCTCAGATTG
TGTGCGAGATTATGTGTTTTCAAGACAGAATGAAATATCAGAGATTATAC
GACAGAACGTACAATTATTAGAGGTATGTAGGTTCTCTTCCTTCCATGGG
TTATTGCGATAAAAGTACTAATCTTGCCACAGATACATGACTTGTGGCTC
AACTTTCAGGAGGCAAAAAGATTAGAACAGGGTCAGAGGCGTCTAATGTT
CACAAAGTTCATAGTTGCTGTgctggtataatatcagggttggtcaaagc
aaaatttttagaaaatgagctAAGCAACCTCAGATCTGACCCGAAAAttt
gagtttgtaaaaaaaGGTGTATGCAAATATTGGCGTTCATACGATTAACT
CTTCGAGCATCTTCCAATTTTTTTACTAGGGGAAGCATCTTGGGGGTCAA
TGAATATGGGTTAATTGTTTTATTCTTGGATAATGATAATGATTTATTGG
GATCACGTCGAAATTTCACCGAAGAAAAATGTTGTGCTATAATTTTTTCA
CTAGGTTTCCACGACGAGTGCTGCAGCAGAGAAATCGAACAATTTGATTG
ATGTTAAGAGTCCTTCATTTTTCTATATCGTAACTGGTGTGATTGGAATA
TTAGTAGTGGCAGCTTTCTTTGGCACGATATGGGATATTAGAAAAAGACA
AATGGAAAAACGTGAGTATTGTACAAATGAAgtaaaagcccgaagggtta
gaagcgaatctttaacctttcttaggCAAGCAAAAGCAAAGCCTTAGAAT
atacgccgtatttttgacgatgGATTAAATTTAGCGGTTTTCGAgtggta
tattttttgaaatctggcgaaaaagtttactttcaatctgaaATTTGCAC
AAAAACCACGCGGGCCGCTCAAGGATTTGGGGATTTagcggcttcaaatc
ctacgtAGGGATTTATGCAATGAATACAGATAAAAGTTATCAAAGagcta
aaaaaaaacatacgTCAAAGAACTTCGGGGTATAATATTTTCTCTGTAAC
AGTGCGATCAACGGAGTCAATCCGGTACAGCTATTACGGTGTTTGGAACT
GTTTTAAGATAAGTTGTTGCAAGAAGAAATGAATGAAATGTAATTAAGAA
GagaaaattacattaattggTTGTGGACAATTAACCAGTCAATCAACTAA
GAATATCTATGAAAATTATCCCATTCTCATATAACCttcgatagctcagt
tggtagagcggaggactgtagatgTGAATGAGCAGATATCCTTAGGTCGC
TGGTTCAAATCCGGCTCGAAGGACTAATtttctatgatttttttttctaa
cgAGATTTCTTTTTCACTTGGTGNGACTAATtttctatgatttttttttc
taacgAGATTTCTTTTTCACTTGGTGTATATCAGATTctttcatattgga
agtttatatTGATAACGGCTGTCGActtcgaaaatacaaaaaacaacaga
aatttGAACACTGAGTTTCTGCTGGttttaatacacgttttttttataag
aacaaactatataagaacataaggcttcgctggccaaaatgttaagaaca
agttaagactTTGTGGACtgaaaaacaccctatttcttaggaaaatggtc
aaaaatattcaaaaaaatggtcaaagtaagaacatgttaagaacattatt
aggcttaaaactcaaaaagttattaagaacatccaaaggcttcaaaaatt
ttggatgttcttataaaaaaatgtgtactggCTTTGATAATTGGTATTct
cctttttttcattttcagtgaagAAGTACAACCCCCACGAAGATATTTCT
CTGTCCGAATGGCGTGCACGTTATAAATGTGACTTTCAACAGGTGTTGGA
AGATATGCAAGGAGAATGTACAAGCATAAGTGATAAATGTACTTCTATAC
TGAAACAACTTCAAAGTAGTAATGGGATTGTATGTTTACGGAAAAAACGT
TCGGATGATATGAGGATTGAGTATGACTACTAGTCCAAAC

Coding sequence (CDS) from alignment at scaffold_23:149165..153754+

>TCONS_00053399 ID=TCONS_00053399|Name=TCONS_00053399|organism=Clytia hemisphaerica|type=CDS|length=7266bp|location=Sequence derived from alignment at scaffold_23:149165..153754+ (Clytia hemisphaerica)
ATGAATGCTTTGATGCCGTCATGGTCTGTCTTTGCTCTGCTGCTGGTCCT
TGTGGCTATCTCTGGTTCTATATATGCTCTAATTGAGATGATTAGTCTCT
CTCTGGATGGTGAAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAGGA
ATTTGGTGGGCCTTTGTTTCCATGACTACAGTTGGATACGGCGATATATG
TCCAAAGACGAAACCTGGTCGTATATTCAGCATTGTATGGGTGATCACAG
GAGTTGCAAGCTGTGCATTATTCACGTCCTACATGACGACGGTTTTGACG
TCCATTTGTATGACGGAAGACGTGTCTCTGACGGCAACCAAgGTTGGCGT
CCTAACTGAAAGCGAAGAACATCGGTTTGCCATGAAACGAAATTCAATGC
CTCAAGCATTTCCAACGATAAATGAAGTCATAGATGCTTTAAAACGCCGT
GAAGTTCGTGGTATCTTAATCGATAGTTACATAGCAGCCGAATATGAAGA
ACAACTGAAATCGTTCAAGAGACAAATGGTCATTGAATATATCACAAGTT
ATGGTGTGGTGTTTTTAAACGAAGGTGTTCGCTTCTCAGATTGTGTGCGA
GATTATGTGTTTTCAAGACAGAATGAAATATCAGAGATTATACGACAGAA
CGTACAATTATTAGAGGTTTCCACGACGAGTGCTGCAGCAGAGAAATCGA
ACAATTTGATTGATGTTAAGAGTCCTTCATTTTTCTATATCGTAACTGGT
GTGATTGGAATATTAGTAGTGGCAGCTTTCTTTGGCACGATATGGGATAT
TAGAAAAAGACAAATGGAAAAACtgaagAAGTACAACCCCCACGAAGATA
TTTCTCTGTCCGAATGGCGTGCACGTTATAAATGTGACTTTCAACAGGTG
TTGGAAGATATGCAAGGAGAATGTACAAGCATAAGTGATAAATGTACTTC
TATACTGAAACAACTTCAAAGTAGTAATGGGATTGTATGTTTACGGAAAA
AACGTTCGGATGATATGAGGATTGAGTATGACTACTAGATGAATGCTTTG
ATGCCGTCATGGTCTGTCTTTGCTCTGCTGCTGGTCCTTGTGGCTATCTC
TGGTTCTATATATGCTCTAATTGAGATGATTAGTCTCTCTCTGGATGGTG
AAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAGGAATTTGGTGGGCC
TTTGTTTCCATGACTACAGTTGGATACGGCGATATATGTCCAAAGACGAA
ACCTGGTCGTATATTCAGCATTGTATGGGTGATCACAGGAGTTGCAAGCT
GTGCATTATTCACGTCCTACATGACGACGGTTTTGACGTCCATTTGTATG
ACGGAAGACGTGTCTCTGACGGCAACCAAgGTTGGCGTCCTAACTGAAAG
CGAAGAACATCGGTTTGCCATGAAACGAAATTCAATGCCTCAAGCATTTC
CAACGATAAATGAAGTCATAGATGCTTTAAAACGCCGTGAAGTTCGTGGT
ATCTTAATCGATAGTTACATAGCAGCCGAATATGAAGAACAACTGAAATC
GTTCAAGAGACAAATGGTCATTGAATATATCACAAGTTATGGTGTGGTGT
TTTTAAACGAAGGTGTTCGCTTCTCAGATTGTGTGCGAGATTATGTGTTT
TCAAGACAGAATGAAATATCAGAGATTATACGACAGAACGTACAATTATT
AGAGGTTTCCACGACGAGTGCTGCAGCAGAGAAATCGAACAATTTGATTG
ATGTTAAGAGTCCTTCATTTTTCTATATCGTAACTGGTGTGATTGGAATA
TTAGTAGTGGCAGCTTTCTTTGGCACGATATGGGATATTAGAAAAAGACA
AATGGAAAAACtgaagAAGTACAACCCCCACGAAGATATTTCTCTGTCCG
AATGGCGTGCACGTTATAAATGTGACTTTCAACAGGTGTTGGAAGATATG
CAAGGAGAATGTACAAGCATAAGTGATAAATGTACTTCTATACTGAAACA
ACTTCAAAGTAGTAATGGGATTGTATGTTTACGGAAAAAACGTTCGGATG
ATATGAGGATTGAGTATGACTACTAGATGAATGCTTTGATGCCGTCATGG
TCTGTCTTTGCTCTGCTGCTGGTCCTTGTGGCTATCTCTGGTTCTATATA
TGCTCTAATTGAGATGATTAGTCTCTCTCTGGATGGTGAAGAGTATCCTG
CTTTTCATCAAGGGGTCTGGGCAGGAATTTGGTGGGCCTTTGTTTCCATG
ACTACAGTTGGATACGGCGATATATGTCCAAAGACGAAACCTGGTCGTAT
ATTCAGCATTGTATGGGTGATCACAGGAGTTGCAAGCTGTGCATTATTCA
CGTCCTACATGACGACGGTTTTGACGTCCATTTGTATGACGGAAGACGTG
TCTCTGACGGCAACCAAgGTTGGCGTCCTAACTGAAAGCGAAGAACATCG
GTTTGCCATGAAACGAAATTCAATGCCTCAAGCATTTCCAACGATAAATG
AAGTCATAGATGCTTTAAAACGCCGTGAAGTTCGTGGTATCTTAATCGAT
AGTTACATAGCAGCCGAATATGAAGAACAACTGAAATCGTTCAAGAGACA
AATGGTCATTGAATATATCACAAGTTATGGTGTGGTGTTTTTAAACGAAG
GTGTTCGCTTCTCAGATTGTGTGCGAGATTATGTGTTTTCAAGACAGAAT
GAAATATCAGAGATTATACGACAGAACGTACAATTATTAGAGGTTTCCAC
GACGAGTGCTGCAGCAGAGAAATCGAACAATTTGATTGATGTTAAGAGTC
CTTCATTTTTCTATATCGTAACTGGTGTGATTGGAATATTAGTAGTGGCA
GCTTTCTTTGGCACGATATGGGATATTAGAAAAAGACAAATGGAAAAACt
gaagAAGTACAACCCCCACGAAGATATTTCTCTGTCCGAATGGCGTGCAC
GTTATAAATGTGACTTTCAACAGGTGTTGGAAGATATGCAAGGAGAATGT
ACAAGCATAAGTGATAAATGTACTTCTATACTGAAACAACTTCAAAGTAG
TAATGGGATTGTATGTTTACGGAAAAAACGTTCGGATGATATGAGGATTG
AGTATGACTACTAGATGAATGCTTTGATGCCGTCATGGTCTGTCTTTGCT
CTGCTGCTGGTCCTTGTGGCTATCTCTGGTTCTATATATGCTCTAATTGA
GATGATTAGTCTCTCTCTGGATGGTGAAGAGTATCCTGCTTTTCATCAAG
GGGTCTGGGCAGGAATTTGGTGGGCCTTTGTTTCCATGACTACAGTTGGA
TACGGCGATATATGTCCAAAGACGAAACCTGGTCGTATATTCAGCATTGT
ATGGGTGATCACAGGAGTTGCAAGCTGTGCATTATTCACGTCCTACATGA
CGACGGTTTTGACGTCCATTTGTATGACGGAAGACGTGTCTCTGACGGCA
ACCAAgGTTGGCGTCCTAACTGAAAGCGAAGAACATCGGTTTGCCATGAA
ACGAAATTCAATGCCTCAAGCATTTCCAACGATAAATGAAGTCATAGATG
CTTTAAAACGCCGTGAAGTTCGTGGTATCTTAATCGATAGTTACATAGCA
GCCGAATATGAAGAACAACTGAAATCGTTCAAGAGACAAATGGTCATTGA
ATATATCACAAGTTATGGTGTGGTGTTTTTAAACGAAGGTGTTCGCTTCT
CAGATTGTGTGCGAGATTATGTGTTTTCAAGACAGAATGAAATATCAGAG
ATTATACGACAGAACGTACAATTATTAGAGGTTTCCACGACGAGTGCTGC
AGCAGAGAAATCGAACAATTTGATTGATGTTAAGAGTCCTTCATTTTTCT
ATATCGTAACTGGTGTGATTGGAATATTAGTAGTGGCAGCTTTCTTTGGC
ACGATATGGGATATTAGAAAAAGACAAATGGAAAAACtgaagAAGTACAA
CCCCCACGAAGATATTTCTCTGTCCGAATGGCGTGCACGTTATAAATGTG
ACTTTCAACAGGTGTTGGAAGATATGCAAGGAGAATGTACAAGCATAAGT
GATAAATGTACTTCTATACTGAAACAACTTCAAAGTAGTAATGGGATTGT
ATGTTTACGGAAAAAACGTTCGGATGATATGAGGATTGAGTATGACTACT
AGATGAATGCTTTGATGCCGTCATGGTCTGTCTTTGCTCTGCTGCTGGTC
CTTGTGGCTATCTCTGGTTCTATATATGCTCTAATTGAGATGATTAGTCT
CTCTCTGGATGGTGAAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAG
GAATTTGGTGGGCCTTTGTTTCCATGACTACAGTTGGATACGGCGATATA
TGTCCAAAGACGAAACCTGGTCGTATATTCAGCATTGTATGGGTGATCAC
AGGAGTTGCAAGCTGTGCATTATTCACGTCCTACATGACGACGGTTTTGA
CGTCCATTTGTATGACGGAAGACGTGTCTCTGACGGCAACCAAgGTTGGC
GTCCTAACTGAAAGCGAAGAACATCGGTTTGCCATGAAACGAAATTCAAT
GCCTCAAGCATTTCCAACGATAAATGAAGTCATAGATGCTTTAAAACGCC
GTGAAGTTCGTGGTATCTTAATCGATAGTTACATAGCAGCCGAATATGAA
GAACAACTGAAATCGTTCAAGAGACAAATGGTCATTGAATATATCACAAG
TTATGGTGTGGTGTTTTTAAACGAAGGTGTTCGCTTCTCAGATTGTGTGC
GAGATTATGTGTTTTCAAGACAGAATGAAATATCAGAGATTATACGACAG
AACGTACAATTATTAGAGGTTTCCACGACGAGTGCTGCAGCAGAGAAATC
GAACAATTTGATTGATGTTAAGAGTCCTTCATTTTTCTATATCGTAACTG
GTGTGATTGGAATATTAGTAGTGGCAGCTTTCTTTGGCACGATATGGGAT
ATTAGAAAAAGACAAATGGAAAAACtgaagAAGTACAACCCCCACGAAGA
TATTTCTCTGTCCGAATGGCGTGCACGTTATAAATGTGACTTTCAACAGG
TGTTGGAAGATATGCAAGGAGAATGTACAAGCATAAGTGATAAATGTACT
TCTATACTGAAACAACTTCAAAGTAGTAATGGGATTGTATGTTTACGGAA
AAAACGTTCGGATGATATGAGGATTGAGTATGACTACTAGATGAATGCTT
TGATGCCGTCATGGTCTGTCTTTGCTCTGCTGCTGGTCCTTGTGGCTATC
TCTGGTTCTATATATGCTCTAATTGAGATGATTAGTCTCTCTCTGGATGG
TGAAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAGGAATTTGGTGGG
CCTTTGTTTCCATGACTACAGTTGGATACGGCGATATATGTCCAAAGACG
AAACCTGGTCGTATATTCAGCATTGTATGGGTGATCACAGGAGTTGCAAG
CTGTGCATTATTCACGTCCTACATGACGACGGTTTTGACGTCCATTTGTA
TGACGGAAGACGTGTCTCTGACGGCAACCAAgGTTGGCGTCCTAACTGAA
AGCGAAGAACATCGGTTTGCCATGAAACGAAATTCAATGCCTCAAGCATT
TCCAACGATAAATGAAGTCATAGATGCTTTAAAACGCCGTGAAGTTCGTG
GTATCTTAATCGATAGTTACATAGCAGCCGAATATGAAGAACAACTGAAA
TCGTTCAAGAGACAAATGGTCATTGAATATATCACAAGTTATGGTGTGGT
GTTTTTAAACGAAGGTGTTCGCTTCTCAGATTGTGTGCGAGATTATGTGT
TTTCAAGACAGAATGAAATATCAGAGATTATACGACAGAACGTACAATTA
TTAGAGGTTTCCACGACGAGTGCTGCAGCAGAGAAATCGAACAATTTGAT
TGATGTTAAGAGTCCTTCATTTTTCTATATCGTAACTGGTGTGATTGGAA
TATTAGTAGTGGCAGCTTTCTTTGGCACGATATGGGATATTAGAAAAAGA
CAAATGGAAAAACtgaagAAGTACAACCCCCACGAAGATATTTCTCTGTC
CGAATGGCGTGCACGTTATAAATGTGACTTTCAACAGGTGTTGGAAGATA
TGCAAGGAGAATGTACAAGCATAAGTGATAAATGTACTTCTATACTGAAA
CAACTTCAAAGTAGTAATGGGATTGTATGTTTACGGAAAAAACGTTCGGA
TGATATGAGGATTGAGTATGACTACTAGATGAATGCTTTGATGCCGTCAT
GGTCTGTCTTTGCTCTGCTGCTGGTCCTTGTGGCTATCTCTGGTTCTATA
TATGCTCTAATTGAGATGATTAGTCTCTCTCTGGATGGTGAAGAGTATCC
TGCTTTTCATCAAGGGGTCTGGGCAGGAATTTGGTGGGCCTTTGTTTCCA
TGACTACAGTTGGATACGGCGATATATGTCCAAAGACGAAACCTGGTCGT
ATATTCAGCATTGTATGGGTGATCACAGGAGTTGCAAGCTGTGCATTATT
CACGTCCTACATGACGACGGTTTTGACGTCCATTTGTATGACGGAAGACG
TGTCTCTGACGGCAACCAAgGTTGGCGTCCTAACTGAAAGCGAAGAACAT
CGGTTTGCCATGAAACGAAATTCAATGCCTCAAGCATTTCCAACGATAAA
TGAAGTCATAGATGCTTTAAAACGCCGTGAAGTTCGTGGTATCTTAATCG
ATAGTTACATAGCAGCCGAATATGAAGAACAACTGAAATCGTTCAAGAGA
CAAATGGTCATTGAATATATCACAAGTTATGGTGTGGTGTTTTTAAACGA
AGGTGTTCGCTTCTCAGATTGTGTGCGAGATTATGTGTTTTCAAGACAGA
ATGAAATATCAGAGATTATACGACAGAACGTACAATTATTAGAGGTTTCC
ACGACGAGTGCTGCAGCAGAGAAATCGAACAATTTGATTGATGTTAAGAG
TCCTTCATTTTTCTATATCGTAACTGGTGTGATTGGAATATTAGTAGTGG
CAGCTTTCTTTGGCACGATATGGGATATTAGAAAAAGACAAATGGAAAAA
CtgaagAAGTACAACCCCCACGAAGATATTTCTCTGTCCGAATGGCGTGC
ACGTTATAAATGTGACTTTCAACAGGTGTTGGAAGATATGCAAGGAGAAT
GTACAAGCATAAGTGATAAATGTACTTCTATACTGAAACAACTTCAAAGT
AGTAATGGGATTGTATGTTTACGGAAAAAACGTTCGGATGATATGAGGAT
TGAGTATGACTACTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033709	XLOC_033709	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053399-protein	TCONS_00053399-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:149165..153754 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.228006	0.416453	0.132089	0	0.120917	2.50998	2.53835	5.23024	3.73959	2.99979	4.09461	1.25783	0.544427	0.104703	0.433653	1.17162	1.55429	1.83595	2.65725	2.16077	1.77207	1.51648	1.40777	1.0701	1.91977	0.110832	0.369065	0	0.164494

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR028325	VG_K_chnl
IPR013099	K_chnl_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006813	potassium ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005249	voltage-gated potassium channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0008076	voltage-gated potassium channel complex

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006813	potassium ion transport
cellular_component	GO:0008076	voltage-gated potassium channel complex
molecular_function	GO:0005249	voltage-gated potassium channel activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00053399 vs. Swiss-Prot (Human)

BLAST of TCONS_00053399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00053399 (transcript) - C. hemisphaerica