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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053400 ID=TCONS_00053400|Name=TCONS_00053400|organism=Clytia hemisphaerica|type=transcript|length=1034bp
CGACATTAAAACAATGATTGACActataaaatcaaagaaaagtaaATTTG
TCATTTTCGATGAAAAGTGTTTTTTCGATTTGAATGATCTTTACGCTCTG
CAGGTGGTACATGAAATGAAGGGAGTGAAAGAGGCTGTTTTGGAGGAGAA
AAAGTGGTTTGGCAAGCTTGAAAAGGGTGTGAAATCACCCCCGAATTTAA
AGAGGATTGGATTTGAAGATTCTTTGAACGGTTTCAAAGATATTCTTTTC
AACGGCCGTGATCATGTTTATGCGAGAGAAGAGAATAAGAAGTTGGTGAC
CGGGTGTCTTGCATATTTGGTGGGTAGAAGATGGATAGATATTTCAGTTA
TGAAGCAATTTTCGGATATGAGAAATAATGACAACCACGAACCTACGGTT
TGTTTTAGGCAGTTGGAAGATGAGTTTTCGGCAGGTACATTGATAGAACG
GGTGGAGAGATGGTCAGAGTCAGAGGCTTCAACTATTTCAGTTCTTGCTA
ATGTTGGTAAAAAGCAAGGAAAGACTTTCATTTCGACCAAAAATGTCTTC
GGTTGTCACTGGGTTTGCTTTTGCATCAACATtgcatcaaaagaaattct
atatTGTGACTCCTCTGCTTGGAGTCTTCCTACAGATTTCTTGAATAGGA
TTAAGTTTTTTACGGATATTCTAAACACGACATTTAATGTGAACAAAGAT
AAACCATATGTGGTAACAAATGCTCATAAAACCCCAACACCTCCGTCAAA
GGTCCACAGATGCAGTGACGGGTGTTTGCCACTACCGTATCAAGGACCAG
ATGGGACAATATGTGGTGTAGCTGCTTTGTTTTCTGCTGTCATTCTAAGT
GAAAAAGGTTTAGAACAAAGCACACTTCCTCCTTCACTATCATGGTTGAC
AAGTATCAACCAATTCAATGATTTTTCACGCTGCATAATGATCAGATGGT
ACATGCAAAGAGAAATCAACGCTCAAGACATTTGGTTAAGTGGTGAAAGA
AAACCTACAAAATCTTTCGAGCAACCCACTGCTG Run BLAST on NCBI protein sequence of TCONS_00053400-protein >TCONS_00053400-protein ID=TCONS_00053400-protein|Name=TCONS_00053400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
DIKTMIDTIKSKKSKFVIFDEKCFFDLNDLYALQVVHEMKGVKEAVLEEK
KWFGKLEKGVKSPPNLKRIGFEDSLNGFKDILFNGRDHVYAREENKKLVT
GCLAYLVGRRWIDISVMKQFSDMRNNDNHEPTVCFRQLEDEFSAGTLIER
VERWSESEASTISVLANVGKKQGKTFISTKNVFGCHWVCFCINIASKEIL
YCDSSAWSLPTDFLNRIKFFTDILNTTFNVNKDKPYVVTNAHKTPTPPSK
VHRCSDGCLPLPYQGPDGTICGVAALFSAVILSEKGLEQSTLPPSLSWLT
SINQFNDFSRCIMIRWYMQREINAQDIWLSGERKPTKSFEQPTA Run BLAST on NCBI transcript from alignment at scaffold_23:160263..161621+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053400 ID=TCONS_00053400|Name=TCONS_00053400|organism=Clytia hemisphaerica|type=transcript|length=1359bp|location=Sequence derived from alignment at scaffold_23:160263..161621+ (Clytia hemisphaerica)
CGACATTAAAACAATGATTGACActataaaatcaaagaaaagtaaATTTG
TCATTTTCGATGAAAAGTGTTTTTTCGATTTGAATGATCTTTACGCTCTG
CAGGTGGTACATGAAATGAAGGGAGTGAAAGAGGCTGTTTTGGAGGAGAA
AAAGTGGTTTGGCAAGCTTGAAAAGGGTGTGAAATCACCCCCGAATTTAA
AGAGGATTGGATTTGAAGATTCTTTGAACGGTTTCAAAGATATTCTTTTC
AACGGCCGTGATCATGTTTATGCGAGAGAAGAGAATAAGAAGTTGGTGAC
CGGGTGTCTTGCATATTTGGTGGGTAGAAGATGGATAGATATTTCAGTTA
TGAAGCAATTTTCGGATATGAGAAATAATGACAACCACGAACCTACGGTT
TGTTTTAGGCAGTTGGAAGATGAGTTTTCGGCAGGTACATTGATAGAACG
GGTGGAGAGATGGTCAGAGTCAGAGGCTTCAACTATTTCAGTTCTTGCTA
ATGTTGGTAAAAAGCAAGGAAAGACTTTCATTTCGACCAAAAATGTCTTC
GGTTGTCACTGGGTTTGCTTTTGCATCAACATtgcatcaaaagaaattct
atatTGTGACTCCTCTGCTTGGAGTCTTCCTACAGATTTCTTGAATAGGA
TTAAGTTTTTTACGGATATTCTAAACACGACATTTAATGTGAACAAAGAT
AAACCATATGTGGTAACAAATGCTCATAAAACCCCAACACCTCCGTCAAA
GGTCCACAGATGCAGTGACGGGTGTTTGCCACTACCGTATCAAGGACCAG
ATGGGACAATATGTGGTGTAGCTGCTTTGTTTTCTGCTGTCATTCTAAGT
GAAAAAGGTTTAGAACAAAGCACACTTCCTCCTTCACTATCATGGTTGAC
AAGTATCAACCAATTCAATGATTTTTCACGCTGCATAATGATCAGATGGT
ACATGCAAAGAGAAATCAACGCTCAAGACATTTGGTTAAGTGGTGAAAGA
GTAAGATAATTTATCATATTTACTTTCATGTATCACTCTTGATTCAAGAG
ATCCTTTTAAAGGTAAGCTTTGCTAAAAATACTTACACAACTAGAATTAC
ATAAATCGAAAAGAGCCTCCTTCAAGCAAGTCAATTTTCGGTCGAATtaa
tggtcgaaatatattttcccttttttgtctaAAACGTGAGAAAGAGATGG
AGGAAACATAAACCAATTATTTCATTATGGCGTTACagcattattcttaa
aaaatacttaaaatttgtgattcttataaaaaaagactgCGTGCTGATTT
CTAAACCAGTACACTTTTTTCTCAGAAACCTACAAAATCTTTCGAGCAAC
CCACTGCTG Coding sequence (CDS) from alignment at scaffold_23:160263..161621+ >TCONS_00053400 ID=TCONS_00053400|Name=TCONS_00053400|organism=Clytia hemisphaerica|type=CDS|length=2064bp|location=Sequence derived from alignment at scaffold_23:160263..161621+ (Clytia hemisphaerica)
GACATTAAAACAATGATTGACActataaaatcaaagaaaagtaaATTTGT
CATTTTCGATGAAAAGTGTTTTTTCGATTTGAATGATCTTTACGCTCTGC
AGGTGGTACATGAAATGAAGGGAGTGAAAGAGGCTGTTTTGGAGGAGAAA
AAGTGGTTTGGCAAGCTTGAAAAGGGTGTGAAATCACCCCCGAATTTAAA
GAGGATTGGATTTGAAGATTCTTTGAACGGTTTCAAAGATATTCTTTTCA
ACGGCCGTGATCATGTTTATGCGAGAGAAGAGAATAAGAAGTTGGTGACC
GGGTGTCTTGCATATTTGGTGGGTAGAAGATGGATAGATATTTCAGTTAT
GAAGCAATTTTCGGATATGAGAAATAATGACAACCACGAACCTACGGTTT
GTTTTAGGCAGTTGGAAGATGAGTTTTCGGCAGGTACATTGATAGAACGG
GTGGAGAGATGGTCAGAGTCAGAGGCTTCAACTATTTCAGTTCTTGCTAA
TGTTGGTAAAAAGCAAGGAAAGACTTTCATTTCGACCAAAAATGTCTTCG
GTTGTCACTGGGTTTGCTTTTGCATCAACATtgcatcaaaagaaattcta
tatTGTGACTCCTCTGCTTGGAGTCTTCCTACAGATTTCTTGAATAGGAT
TAAGTTTTTTACGGATATTCTAAACACGACATTTAATGTGAACAAAGATA
AACCATATGTGGTAACAAATGCTCATAAAACCCCAACACCTCCGTCAAAG
GTCCACAGATGCAGTGACGGGTGTTTGCCACTACCGTATCAAGGACCAGA
TGGGACAATATGTGGTGTAGCTGCTTTGTTTTCTGCTGTCATTCTAAGTG
AAAAAGGTTTAGAACAAAGCACACTTCCTCCTTCACTATCATGGTTGACA
AGTATCAACCAATTCAATGATTTTTCACGCTGCATAATGATCAGATGGTA
CATGCAAAGAGAAATCAACGCTCAAGACATTTGGTTAAGTGGTGAAAGAA
AACCTACAAAATCTTTCGAGCAACCCACTGCTGACATTAAAACAATGATT
GACActataaaatcaaagaaaagtaaATTTGTCATTTTCGATGAAAAGTG
TTTTTTCGATTTGAATGATCTTTACGCTCTGCAGGTGGTACATGAAATGA
AGGGAGTGAAAGAGGCTGTTTTGGAGGAGAAAAAGTGGTTTGGCAAGCTT
GAAAAGGGTGTGAAATCACCCCCGAATTTAAAGAGGATTGGATTTGAAGA
TTCTTTGAACGGTTTCAAAGATATTCTTTTCAACGGCCGTGATCATGTTT
ATGCGAGAGAAGAGAATAAGAAGTTGGTGACCGGGTGTCTTGCATATTTG
GTGGGTAGAAGATGGATAGATATTTCAGTTATGAAGCAATTTTCGGATAT
GAGAAATAATGACAACCACGAACCTACGGTTTGTTTTAGGCAGTTGGAAG
ATGAGTTTTCGGCAGGTACATTGATAGAACGGGTGGAGAGATGGTCAGAG
TCAGAGGCTTCAACTATTTCAGTTCTTGCTAATGTTGGTAAAAAGCAAGG
AAAGACTTTCATTTCGACCAAAAATGTCTTCGGTTGTCACTGGGTTTGCT
TTTGCATCAACATtgcatcaaaagaaattctatatTGTGACTCCTCTGCT
TGGAGTCTTCCTACAGATTTCTTGAATAGGATTAAGTTTTTTACGGATAT
TCTAAACACGACATTTAATGTGAACAAAGATAAACCATATGTGGTAACAA
ATGCTCATAAAACCCCAACACCTCCGTCAAAGGTCCACAGATGCAGTGAC
GGGTGTTTGCCACTACCGTATCAAGGACCAGATGGGACAATATGTGGTGT
AGCTGCTTTGTTTTCTGCTGTCATTCTAAGTGAAAAAGGTTTAGAACAAA
GCACACTTCCTCCTTCACTATCATGGTTGACAAGTATCAACCAATTCAAT
GATTTTTCACGCTGCATAATGATCAGATGGTACATGCAAAGAGAAATCAA
CGCTCAAGACATTTGGTTAAGTGGTGAAAGAAAACCTACAAAATCTTTCG
AGCAACCCACTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053400-exon-scaffold_23-1491911889:160263..161262 | TCONS_00053400-exon-scaffold_23-1491911889:160263..161262 | Clytia hemisphaerica | exon |
| TCONS_00053400-exon-scaffold_23-1510915933:160263..161262 | TCONS_00053400-exon-scaffold_23-1510915933:160263..161262 | Clytia hemisphaerica | exon |
| TCONS_00053400-exon-scaffold_23-1575043694:160263..161262 | TCONS_00053400-exon-scaffold_23-1575043694:160263..161262 | Clytia hemisphaerica | exon |
| TCONS_00053400-exon-scaffold_23-1491911889:161588..161621 | TCONS_00053400-exon-scaffold_23-1491911889:161588..161621 | Clytia hemisphaerica | exon |
| TCONS_00053400-exon-scaffold_23-1510915933:161588..161621 | TCONS_00053400-exon-scaffold_23-1510915933:161588..161621 | Clytia hemisphaerica | exon |
| TCONS_00053400-exon-scaffold_23-1575043694:161588..161621 | TCONS_00053400-exon-scaffold_23-1575043694:161588..161621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_23 | supercontig | scaffold_23:160263..161621 + |
Blast
The following BLAST results are available for this feature:
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