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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053443 ID=TCONS_00053443|Name=TCONS_00053443|organism=Clytia hemisphaerica|type=transcript|length=1101bp
caaattttttaatAGCATTTGTAGATAAGatttaaaattatatttatttt
tgtaaattttatacttctgttatttttctatttattaAATTTACAAAATC
ATTTGATTTAACAACTATTTTAAGatacaaaacatttaaaataatatgaa
caaaaatattaaaatgctGGACTTGTATTGGATTGATTTATAAATATTGT
AATGGAATTCGTCTTTGTCAAAATCGTCAATTATTTGTGGTTAAGTATTG
TTATTGGTGTCATTGTGATAGAATTTATGTTCGTGAAATGATTGTTAATG
TGGATCCATTGCTAACCATCTAAAGAAGCATATTTGAATCATCATTGGTA
TCATGCATAAGTTGAAATGTTCCAAAAATACTAAATCAAAGTATATACAG
AAAAAAACACACACAAAAACAGGATTACGACCAAATTTCTCCTCGATCAG
TACCAAGTCATGAATGTATGTATATATTCACTAATTGCAAAATGATTATA
TCAGCGCTCCCCTACAGCAAACAACATTGATGTTCTTCAATTGAAAATCA
GATCTCGAATCACAGATGGTAGTTCACCGTTATACTGCTGCTTTTACTGT
GGATAAAACATTACCGTCAGTTTGCTCACATTTaaatatttcattgaaaa
tttgattattggaaaggttgctGATGTTaacgttttcaagaaaattctaC
CTGATTTAAAGTGATCAAAAAATACTACATCGTTAAATTAGCTTGTCTGT
TGTCTGGATTGGTTTGCCCTTAGTTTATCGGAAAATCATGTGTTTTTTTC
TCTACCAATGTAAATCAACGTAAATAAATCGATTGGTTTGGTTTGGTGTG
GTTTGTATTCGTTGTTGAAAATCATTGCTTGGATGGACTTGTACGATTAA
AAATACTTTAATTTGTTACCAGCTGAATGATTAAACGAACCCTTTTTAAA
tagacaaaataaaataaactttaACTTTTCATGTAaataaaactacattt
ttaaagagttataaaatgtttttaaaattctccattgttaaatttaatat
tttacttgtttaaaaaaatgtcaatcATTCTGTAATATTTATCCCTTTGA
T Run BLAST on NCBI transcript from alignment at scaffold_231:320261..321929+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053443 ID=TCONS_00053443|Name=TCONS_00053443|organism=Clytia hemisphaerica|type=transcript|length=1669bp|location=Sequence derived from alignment at scaffold_231:320261..321929+ (Clytia hemisphaerica)
caaattttttaatAGCATTTGTAGATAAGatttaaaattatatttatttt
tgtaaattttatacttctgttatttttctatttattaAATTTACAAAATC
ATTTGATTTAACAACTATTTTAAGatacaaaacatttaaaataatatgaa
caaaaatattaaaatgctGGACTTGTATTGGATTGATTTATAAATATTGT
AATGGAATTCGTCTTTGTCAAAATCGTCAATTATTTGTGGTTAAGTATTG
TTATTGGTGTCATTGTGATAGAATTTATGTTCGTGAAATGATTGTTAATG
TGGATCCATTGCTAACCATCTAAAGAAGCATATTTGAATCATCATTGGTA
TCATGCATAAGTTGAAATGTTCCAAAAATACTAAATCAAAGTATATACAG
AAAAAAACACACACAAAAACAGGTTAGTGCATCGCAAGTCTTTTGAACAG
CAACAACAATATATTGTATTCTTTCCTCGCTCAATCGTATCAGGCttcat
gttgattttttttcaatattgatGAGTCCCTTTTACAGAGCTATTCAGGT
GTTATAACCTGTTATAACTAGTTTAGCACAAATAAAAATgagtacatatt
tttttattagaacaccaaATATTTCGGCTAGATGGACTTATTTTCTTGCA
AATTTCCagcctaaaaaatgttcttaagcttgttcttaatttctttCCAG
GACACTTAAGGTatgttcaaataaaaaacgtgtaagctaGCCTGTCTATG
TAATTGCATGCATGAAATCATTTTCCTTTTACAGGATTACGACCAAATTT
CTCCTCGATCAGTACCAAGTCATGAATGTATGTATATATTCACTAATTGC
AAAATGATTATATCAGCGCTCCCCTACAGCAAACAACATTGATGTTCTTC
AATTGAAAATCAGGTACTTTAATTTTCAGTTATTTTCAAGCTTATTTGCC
CAGTTCATTTGATAGATATTATAAATATACTTTTATAGAGCTCTACTGTA
TACTGTGAACTTTGATTTGTCTTGAAATCGATCTGCATTGGCATTTGAAA
TCATTGCCAACCGTTTATAGTGTGCTTCTAGCTCCATAATGAATTCTCTA
TTTTTCTATTATGCATTAGATCTCGAATCACAGATGGTAGTTCACCGTTA
TACTGCTGCTTTTACTGTGGATAAAACATTACCGTCAGTTTGCTCACATT
TaaatatttcattgaaaatttgattattggaaaggttgctGATGTTaacg
ttttcaagaaaattctaCCTGATTTAAAGTGATCAAAAAATACTACATCG
TTAAATTAGCTTGTCTGTTGTCTGGATTGGTTTGCCCTTAGTTTATCGGA
AAATCATGTGTTTTTTTCTCTACCAATGTAAATCAACGTAAATAAATCGA
TTGGTTTGGTTTGGTGTGGTTTGTATTCGTTGTTGAAAATCATTGCTTGG
ATGGACTTGTACGATTAAAAATACTTTAATTTGTTACCAGCTGAATGATT
AAACGAACCCTTTTTAAAtagacaaaataaaataaactttaACTTTTCAT
GTAaataaaactacatttttaaagagttataaaatgtttttaaaattctc
cattgttaaatttaatattttacttgtttaaaaaaatgtcaatcATTCTG
TAATATTTATCCCTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053443-exon-scaffold_231-1491911889:320261..320682 | TCONS_00053443-exon-scaffold_231-1491911889:320261..320682 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1510915933:320261..320682 | TCONS_00053443-exon-scaffold_231-1510915933:320261..320682 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1575043694:320261..320682 | TCONS_00053443-exon-scaffold_231-1575043694:320261..320682 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1491911889:321045..321173 | TCONS_00053443-exon-scaffold_231-1491911889:321045..321173 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1510915933:321045..321173 | TCONS_00053443-exon-scaffold_231-1510915933:321045..321173 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1575043694:321045..321173 | TCONS_00053443-exon-scaffold_231-1575043694:321045..321173 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1491911889:321380..321929 | TCONS_00053443-exon-scaffold_231-1491911889:321380..321929 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1510915933:321380..321929 | TCONS_00053443-exon-scaffold_231-1510915933:321380..321929 | Clytia hemisphaerica | exon |
| TCONS_00053443-exon-scaffold_231-1575043694:321380..321929 | TCONS_00053443-exon-scaffold_231-1575043694:321380..321929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:320261..321929 + |
Blast
The following BLAST results are available for this feature:
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