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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053444 ID=TCONS_00053444|Name=TCONS_00053444|organism=Clytia hemisphaerica|type=transcript|length=1660bpRun BLAST on NCBI protein sequence of TCONS_00053444-protein >TCONS_00053444-protein ID=TCONS_00053444-protein|Name=TCONS_00053444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp PFRYCKINIIIMSLWIDKHRPGTLAKLTYHLDQAQYLKRLVNSGDFPHLLRun BLAST on NCBI transcript from alignment at scaffold_231:326852..342666+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053444 ID=TCONS_00053444|Name=TCONS_00053444|organism=Clytia hemisphaerica|type=transcript|length=15815bp|location=Sequence derived from alignment at scaffold_231:326852..342666+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_231:326852..342666+ >TCONS_00053444 ID=TCONS_00053444|Name=TCONS_00053444|organism=Clytia hemisphaerica|type=CDS|length=9909bp|location=Sequence derived from alignment at scaffold_231:326852..342666+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053444 vs. Swiss-Prot (Human)
Match: RFC3 (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2) HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0 Identity = 253/355 (71.27%), Postives = 299/355 (84.23%), Query Frame = 1
Query: 34 MSLWIDKHRPGTLAKLTYHLDQAQYLKRLVNSGDFPHLLVYGPSGAGKKTRIMCLLRELYGTAVEKLKLEQQTFETPSKKKVEISTIGSNYHIEVNPSDAGIYDRLVIQELIKTTASTHQFDPNSQKSFKVVLLMETDRLTKDAQHALRRTMEKYVTTCRLILCCNSTSKVIPAIRSRCLGIRVAAPSKEEITQCLYTVCKKESLSLPEGLAQRIAQKCKGNLRRALLMCEACRVQQYPFTADQSIQDADWEIFLKQTASSIIEQQTPKRLLEVRTRFYELLTHCIPADVIMKGLLGELLKNCDGTLKSEVIQLAAHYEHRLQLGTKPIYHLEAFVAKFMSIYKRFLEEGMADMF 1098
MSLW+DK+RP +L +L YH +QA L+ LV GDFPHLLVYGPSGAGKKTRIMC+LRELYG VEKL++E QT TPSKKK+EISTI SNYH+EVNPSDAG DR+VIQE++KT A + Q + NSQ+ FKVVLL E D+LTKDAQHALRRTMEKY++TCRLILCCNSTSKVIP IRSRCL +RV APS E+I L TVCKKE L+LP LA R+A+K NLR+ALLMCEACRVQQYPFTADQ I + DWE++L++TA++I+ QQTP+RLLEVR R YELLTHCIP ++IMKGLL ELL NCDG LK EV Q+AA+YEHRLQLG+K IYHLEAFVAKFM++YK+F+E+G+ M
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355 The following BLAST results are available for this feature:
BLAST of TCONS_00053444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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