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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053449 ID=TCONS_00053449|Name=TCONS_00053449|organism=Clytia hemisphaerica|type=transcript|length=3181bpRun BLAST on NCBI protein sequence of TCONS_00053449-protein >TCONS_00053449-protein ID=TCONS_00053449-protein|Name=TCONS_00053449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1011bp STGKYMVTFPYPYMNGKLHLGHTFTISKCEFAVGYQRLKGKKCLFPFGFHRun BLAST on NCBI transcript from alignment at scaffold_231:87221..98816- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053449 ID=TCONS_00053449|Name=TCONS_00053449|organism=Clytia hemisphaerica|type=transcript|length=11596bp|location=Sequence derived from alignment at scaffold_231:87221..98816- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_231:87221..98816- >TCONS_00053449 ID=TCONS_00053449|Name=TCONS_00053449|organism=Clytia hemisphaerica|type=CDS|length=75900bp|location=Sequence derived from alignment at scaffold_231:87221..98816- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053449 vs. Swiss-Prot (Human)
Match: SYLC (Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2) HSP 1 Score: 1345.87 bits (3482), Expect = 0.000e+0 Identity = 642/1029 (62.39%), Postives = 800/1029 (77.75%), Query Frame = 3
Query: 3 STGKYMVTFPYPYMNGKLHLGHTFTISKCEFAVGYQRLKGKKCLFPFGFHCTGMPIKACADKLKREMELFGCPPTFPSGDEKKDTTNMKSK--------------VAAKTGGLTYQWQIMQALDIPDEEIKSFADTAHWLKYFPPIATDDLKAMGLKVDWRRSFITTDANPYYDSFARWHFKKLKEAGKVKFGKRYTIFSAKDGQPCMDHDRLSGEGVAPQEYTLIKMKVAAPLPEKLSSLEGKDIYLIAATLRPETMYGQTNCWVHPDLPYIAFESSKENEILISTRRAAKNMAYQGLTKEENKVNIVLELVGQDIMGVALNAPLTAHNVIYTLPMLTIKEDKGTGVVTSVPSDAPDDYAALRDLKNKQPFRAKYNIADEMVLPYEPIPIIDVPELGNLPAIVACDKFKVNSQNDKIQLADAKELTYKKGFYEGVMLVEELKGLXXXXXXXXXXXXMVAEGQAIIYMEPEKKVVSRSGDECIVSKCDQWYLDYGEESWKAEAKKLLGMMETYGDETRHNFLATLDWLQEHACSRSFGLGSKIPWDEKYLIESLSDSTIYMAYYTIAHFLQG-SIYGRDTGLANASAAQMTDEVWDYIFLKEVDEIPTTDIDHEILRKMKAEFEFWYPLDLRVSGKDLIPNHLTYFLYNHVAVWNNKEEKWPKGVRANGHLLLNSMKMSKSTGNFLTLKSAIGKFSADGMRLALADAGDTIEDANFVEKTADSGLLRLYTLIEWVKEMIESKESLRSGPMNDFNDQVFLSEINLTINKTEEAFEKMQFREGLKSGLYEFQTVRDKYRELSIDGMHIDVVMKYIEVQALLLSPICPHVSEHIWSLLGKPGSIMNASWPVSGDIDHGLLTCSQYLMECARDFRLRLKN-MIAAANKKKGKNPSVEVGKPTQGVVYVAKEYPPWQQVVLKTLREMYTQNNNTFPENKEIMNALKTNADVKKHMKKLMPFVAHLKTRVATEGVSAMDLSVSFDETTVLMDNLTYLLKSIELENIEIKPSTEAEAKVQEECAPGKPYSIFKS*P 3041
S GKY VTFPYPYMNG+LHLGHTF++SKCEFAVGYQRLKGK CLFPFG HCTGMPIKACADKLKRE+EL+GCPP FP +E+++ T++K++ AAK G YQW IM++L + DEEI F++ HWL YFPP+A DLK MGLKVDWRRSFITTD NPYYDSF RW F L+E K+KFGKRYTI+S KDGQPCMDHDR +GEGV PQEYTL+K+KV P P KLS L+GK+I+L+AATLRPETM+GQTNCWV PD+ YI FE+ +I I T++AA+NM+YQG TK+ V +V EL+G++I+G +L+APLT++ VIY LPMLTIKEDKGTGVVTSVPSD+PDD AALRDLK KQ RAKY I D+MVLP+EP+P+I++P GNL A+ CD+ K+ SQND+ +LA+AKE Y KGFYEG+MLV+ KG KVQDVKK +Q KM+ G A+IYMEPEK+V+SRS DEC+V+ CDQWYLDYGEE+WK + + L +ET+ +ETR NF ATL WLQEHACSR++GLG+ +PWDE++LIESLSDSTIYMA+YT+AH LQG +++G+ QMT EVWDY+F KE P T I E L ++K EFEFWYP+DLRVSGKDL+PNHL+Y+LYNHVA+W + +KWP VRANGHLLLNS KMSKSTGNFLTL AI KFSADGMRLALADAGDT+EDANFVE AD+G+LRLYT +EWVKEM+ + +SLRSGP + FND+VF SE+N I KT++ +EKM F+E LK+G +EFQ +DKYREL+++GMH ++V ++IEVQ LLL+P CPH+ EHIW+LLGKP SIMNASWPV+G ++ L+ SQYLME D RLRLKN M+ A KK K P + KP+ +YVAK YPPWQ L LR+ + NN P+NK I + L + ++KK+MKK+MPFVA +K + G +DL + FDE VLM+N+ YL S+ELE+IE+K ++EAE K++E+C PGKP ++F+ P
Sbjct: 42 SKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDFPDEEEEEEETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKRMGLKVDWRRSFITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVN-GDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQTSQCLKNLETFCEETRRNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEA-PFPKTQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYRELAVEGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSIMNASWPVAGPVNEVLIHSSQYLMEVTHDLRLRLKNYMMPAKGKKTDKQP---LQKPSHCTIYVAKNYPPWQHTTLSVLRKHFEANNGKLPDNKVIASELGSMPELKKYMKKVMPFVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEAEDKIREDCCPGKPLNVFRIEP 1065 The following BLAST results are available for this feature:
BLAST of TCONS_00053449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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