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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053455 ID=TCONS_00053455|Name=TCONS_00053455|organism=Clytia hemisphaerica|type=transcript|length=1925bpRun BLAST on NCBI protein sequence of TCONS_00053455-protein >TCONS_00053455-protein ID=TCONS_00053455-protein|Name=TCONS_00053455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp CLTSYDILCDVYIIKKMSRVYDAIEPSVIDELLLKLSVEEQGPKSEAGKIRun BLAST on NCBI transcript from alignment at scaffold_231:193428..216034- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053455 ID=TCONS_00053455|Name=TCONS_00053455|organism=Clytia hemisphaerica|type=transcript|length=22607bp|location=Sequence derived from alignment at scaffold_231:193428..216034- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_231:193428..216034- >TCONS_00053455 ID=TCONS_00053455|Name=TCONS_00053455|organism=Clytia hemisphaerica|type=CDS|length=17787bp|location=Sequence derived from alignment at scaffold_231:193428..216034- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053455 vs. Swiss-Prot (Human)
Match: DRC3 (Dynein regulatory complex subunit 3 OS=Homo sapiens GN=DRC3 PE=2 SV=2) HSP 1 Score: 499.975 bits (1286), Expect = 5.152e-170 Identity = 263/518 (50.77%), Postives = 376/518 (72.59%), Query Frame = 2
Query: 50 MSRVYDAIEPSVIDELLLKLSVEEQGPKSEAGKIAKKEGIDFKDVSELRLDFKNILKIDNLWQFTKLVKLQLDNNFIEKIDGLGSLVNLQWLDLSFNNIEVIEGLDQLTKLRDLTFYNNKITTVGNMDTLTELQILSLGNNQLGTLTDLVYLRRFEKLNTLTLGGNPFCKTDEYYKYTIAHLPKLVYLNYRLIDDVKRDEAVEAYHDSIEALLHDEAIVQNKRIEQEESDSQRV-IHKEAFVEDLNTSLLFESMFEEDAEASKLEQLPGVEELLQTYRETFNDVCMKLFEFGLKDRVKRKEEIDSFFQALNDAIQQNLKESLQPIQEFESQKGKVFSELVNCTDQETAEKRIAELSDSITALWDILMGLEMQLVDQLEESIKDFERNMADLVGSFVENVQELISQLRTLESNHHEKLSDIAVVTLXXXXXXXXXXXXXXXVRVLFVDKDTIVNAVSASHDAHTFRIDNKEDDIVTRSNTRVQTLIEMIHADEIKRNRTRVNEINTLLDHYRDEIENFE 1600
M++ +++EP V+D+ +LKL+V +QGP+ EAG++AK+EGI FKDV L+LDF+NIL+IDNLWQF L KLQLDNN IEKI+GL +L +L WLDLSFNNIE IEGLD L L DL+ +NN+I+ + ++D L +LQ+LSLGNN++ + +++YLRRF+ L TL+L NP + ++Y + A+LP L+YL+YR IDD + A + SI+ L H E ++Q ++E E++ + + HK AFVE LN S LF+SM+ ED+E + L LPGV ELL+TY++ F +C+ +FE+GLK + KRK E+D+F + + +AIQ+N ++ + I +FE + S + + EK I E S I+ L+D LM LEMQLV+QLEE+I FERN+ D+VG F+ENVQ L++Q R LE++HHEKL +I++ TLEK+++ +L+E++ +D+R LFVDKDTIVNAV ASHD H +IDN+ED++VTR N+ LI+ IH DEI RNR RV EIN +DH + E++N E
Sbjct: 1 MNQPCNSMEPRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYSIDELKHQENLMQ-AQLEDEQAQREELEKHKTAFVEHLNGSFLFDSMYAEDSEGNNLSYLPGVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVREAIQENQEQGKRKIAKFEEKHLSSLSAIREELELPNIEKMILECSADISELFDALMTLEMQLVEQLEETINMFERNIVDMVGLFIENVQSLMAQCRDLENHHHEKLLEISISTLEKIVEGDLDEDLPNDLRALFVDKDTIVNAVGASHDIHLLKIDNREDELVTRINSWCTRLIDRIHKDEIMRNRKRVKEINQYIDHMQSELDNLE 517 The following BLAST results are available for this feature:
BLAST of TCONS_00053455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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