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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053517 ID=TCONS_00053517|Name=TCONS_00053517|organism=Clytia hemisphaerica|type=transcript|length=1317bp
GTCAGATTATTTTTTCAGTTTCCTAGCCTAAAACATGCAGTGAATAAATG
AAAACAGTTTTATATTATGAAATAGTATATAAATACCTGTATTTTTCATT
AGTATTTTGTACGACGTCCTCTTCCTTGAATCACTTTGATTACACGCTTC
GGCATTGTGTCAATTATGCGATCAATTTTAGCCTTGTCAAACGATATCAT
TGTGTGTTTAACTCTTTCGGTGAACTCTTCCTTACTTTCCTTTGTGATAT
TGATTGCTATCCAACGCTTGCTTTTGGAGAACTTGATTAACCTGGTTAAA
GAAATTCTCGATGGGGTTTAAGTCCGGTGAACGCGGTGGAATGCAGAATG
CCATTGATTTGACTTTTTCGTATGCTGTCATTGCCTTCTTGGATTTCTGT
CGCGGGCAGTTGTCCATGAGGAATCTGCGGGTTATAGGGTTGGAACtctt
taaaaatgccttatCGAAATGGTCTGCGACGATGGTTGCCATCTTTTCAG
CTGTGATGCTTCCAAAGTACGGCTCACACAAAACCACGCCTGCACCATAA
CTGATGGCTACCATGAAATTAACATTCACCACACCGGCCTTGCTACATTT
TCTGGTCAGTCCAAATTCTAATCCTTCGTTGCGCTTTCTCCATTGACATG
CCCTGGGTGCCCTGGCTTGGTCTTGTGGGTTTGTTTTGTACTGGAAACCC
TTGGCGTCCAAGTAAAATGATATCCCCCTTCTCCAAAAGTCTAATCCAAG
TTTCCTACGTCTGATAGTTTTGCAAAACTTAAGTCTTTTCTTCAAGTCTG
CCAAAGTAAGCAAACCTTTACGGCGGCCCTGAAGGTATCGATAGCCTCCC
TGATTTAAAATTCTTCTCACAGTCCTGTTTGATAAGTGTGTCACTCCCGC
AATAACTTTAATTCTTCCTGAAGTGAAGTTGGCGCCTTCTGTTCTACGCA
AAATGTTCACGGTTCGGACTATGGCCCGTCTGTCTTGATTCGTGGCTTTG
CTCGGGCGACCACCGGCATTTTTCTTCCTCAGGGTTAAATCACCAATTTG
CCTCTTAGCATGTCTCTGTACAGTTCTTCTGTTATACATTGGGAACATTT
TATGGATTTCTGTGATACTTGCACCAGCCTTTTGATGAAGGGCCCTCATT
TCACAAGAGTGAACCAGTGTGACCCTTGCATTgttattctttctttttaa
atttttcatttttatactttttctctgtaaatagaaaaatataaacaaac
attTTAGAACAAAGTTAGATACCTCATCCCAAGCCTTTTTTCACCCACAA
CACACCTAATATTTCAG Run BLAST on NCBI protein sequence of TCONS_00053517-protein >TCONS_00053517-protein ID=TCONS_00053517-protein|Name=TCONS_00053517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MKNLKRKNNNARVTLVHSCEMRALHQKAGASITEIHKMFPMYNRRTVQRH
AKRQIGDLTLRKKNAGGRPSKATNQDRRAIVRTVNILRRTEGANFTSGRI
KVIAGVTHLSNRTVRRILNQGGYRYLQGRRKGLLTLADLKKRLKFCKTIR
RRKLGLDFWRRGISFYLDAKGFQYKTNPQDQARAPRACQWRKRNEGLEFG
LTRKCSKAGVVNVNFMVAISYGAGVVLCEPYFGSITAEKMATIVADHFDK
AFLKSSNPITRRFLMDNCPRQKSKKAMTAYEKVKSMAFCIPPRSPDLNPI
ENFFNQVNQVLQKQALDSNQYHKGK Run BLAST on NCBI transcript from alignment at scaffold_232:119728..121044 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053517 ID=TCONS_00053517|Name=TCONS_00053517|organism=Clytia hemisphaerica|type=transcript|length=1317bp|location=Sequence derived from alignment at scaffold_232:119728..121044 (Clytia hemisphaerica)
CTGAAATATTAGGTGTGTTGTGGGTGAAAAAAGGCTTGGGATGAGGTATC
TAACTTTGTTCTAAaatgtttgtttatatttttctatttacagagaaaaa
gtataaaaatgaaaaatttaaaaagaaagaataacAATGCAAGGGTCACA
CTGGTTCACTCTTGTGAAATGAGGGCCCTTCATCAAAAGGCTGGTGCAAG
TATCACAGAAATCCATAAAATGTTCCCAATGTATAACAGAAGAACTGTAC
AGAGACATGCTAAGAGGCAAATTGGTGATTTAACCCTGAGGAAGAAAAAT
GCCGGTGGTCGCCCGAGCAAAGCCACGAATCAAGACAGACGGGCCATAGT
CCGAACCGTGAACATTTTGCGTAGAACAGAAGGCGCCAACTTCACTTCAG
GAAGAATTAAAGTTATTGCGGGAGTGACACACTTATCAAACAGGACTGTG
AGAAGAATTTTAAATCAGGGAGGCTATCGATACCTTCAGGGCCGCCGTAA
AGGTTTGCTTACTTTGGCAGACTTGAAGAAAAGACTTAAGTTTTGCAAAA
CTATCAGACGTAGGAAACTTGGATTAGACTTTTGGAGAAGGGGGATATCA
TTTTACTTGGACGCCAAGGGTTTCCAGTACAAAACAAACCCACAAGACCA
AGCCAGGGCACCCAGGGCATGTCAATGGAGAAAGCGCAACGAAGGATTAG
AATTTGGACTGACCAGAAAATGTAGCAAGGCCGGTGTGGTGAATGTTAAT
TTCATGGTAGCCATCAGTTATGGTGCAGGCGTGGTTTTGTGTGAGCCGTA
CTTTGGAAGCATCACAGCTGAAAAGATGGCAACCATCGTCGCAGACCATT
TCGataaggcatttttaaagaGTTCCAACCCTATAACCCGCAGATTCCTC
ATGGACAACTGCCCGCGACAGAAATCCAAGAAGGCAATGACAGCATACGA
AAAAGTCAAATCAATGGCATTCTGCATTCCACCGCGTTCACCGGACTTAA
ACCCCATCGAGAATTTCTTTAACCAGGTTAATCAAGTTCTCCAAAAGCAA
GCGTTGGATAGCAATCAATATCACAAAGGAAAGTAAGGAAGAGTTCACCG
AAAGAGTTAAACACACAATGATATCGTTTGACAAGGCTAAAATTGATCGC
ATAATTGACACAATGCCGAAGCGTGTAATCAAAGTGATTCAAGGAAGAGG
ACGTCGTACAAAATACTAATGAAAAATACAGGTATTTATATACTATTTCA
TAATATAAAACTGTTTTCATTTATTCACTGCATGTTTTAGGCTAGGAAAC
TGAAAAAATAATCTGAC Coding sequence (CDS) from alignment at scaffold_232:119728..121044 >TCONS_00053517 ID=TCONS_00053517|Name=TCONS_00053517|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_232:119728..121044 (Clytia hemisphaerica)
atgaaaaatttaaaaagaaagaataacAATGCAAGGGTCACACTGGTTCA
CTCTTGTGAAATGAGGGCCCTTCATCAAAAGGCTGGTGCAAGTATCACAG
AAATCCATAAAATGTTCCCAATGTATAACAGAAGAACTGTACAGAGACAT
GCTAAGAGGCAAATTGGTGATTTAACCCTGAGGAAGAAAAATGCCGGTGG
TCGCCCGAGCAAAGCCACGAATCAAGACAGACGGGCCATAGTCCGAACCG
TGAACATTTTGCGTAGAACAGAAGGCGCCAACTTCACTTCAGGAAGAATT
AAAGTTATTGCGGGAGTGACACACTTATCAAACAGGACTGTGAGAAGAAT
TTTAAATCAGGGAGGCTATCGATACCTTCAGGGCCGCCGTAAAGGTTTGC
TTACTTTGGCAGACTTGAAGAAAAGACTTAAGTTTTGCAAAACTATCAGA
CGTAGGAAACTTGGATTAGACTTTTGGAGAAGGGGGATATCATTTTACTT
GGACGCCAAGGGTTTCCAGTACAAAACAAACCCACAAGACCAAGCCAGGG
CACCCAGGGCATGTCAATGGAGAAAGCGCAACGAAGGATTAGAATTTGGA
CTGACCAGAAAATGTAGCAAGGCCGGTGTGGTGAATGTTAATTTCATGGT
AGCCATCAGTTATGGTGCAGGCGTGGTTTTGTGTGAGCCGTACTTTGGAA
GCATCACAGCTGAAAAGATGGCAACCATCGTCGCAGACCATTTCGataag
gcatttttaaagaGTTCCAACCCTATAACCCGCAGATTCCTCATGGACAA
CTGCCCGCGACAGAAATCCAAGAAGGCAATGACAGCATACGAAAAAGTCA
AATCAATGGCATTCTGCATTCCACCGCGTTCACCGGACTTAAACCCCATC
GAGAATTTCTTTAACCAGGTTAATCAAGTTCTCCAAAAGCAAGCGTTGGA
TAGCAATCAATATCACAAAGGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053517-exon-scaffold_232-1491911889:119728..121044 | TCONS_00053517-exon-scaffold_232-1491911889:119728..121044 | Clytia hemisphaerica | exon |
| TCONS_00053517-exon-scaffold_232-1510915933:119728..121044 | TCONS_00053517-exon-scaffold_232-1510915933:119728..121044 | Clytia hemisphaerica | exon |
| TCONS_00053517-exon-scaffold_232-1575043694:119728..121044 | TCONS_00053517-exon-scaffold_232-1575043694:119728..121044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_232 | supercontig | scaffold_232:119728..121044 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
| IPR002492 | Transposase_Tc1-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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