TCONS_00053531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053531
Unique NameTCONS_00053531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053531 ID=TCONS_00053531|Name=TCONS_00053531|organism=Clytia hemisphaerica|type=transcript|length=1399bp
AAACTAATGAGAGACCATACTGGTATAAATTGATAACATTGTACGAAATC
TCAGGTTTAATCAATATCAAGGTGTGGCTCTATAGTAACTTTACCgctaa
tatataaaaaaaatcacgaCAAATCAAAATATAGCAAAAACTAGACGAAA
TCCATTTAAAAATTCACATCAAAACATATTTAACATGTGATCCCACTTGT
TCGAGTTGAAAACTCGGCACGGAATCGCCCGGTATATCTTTAACGTTCGT
ACTTTGTTGGACACCCTTTGCTAGAAATCCATATTACATCAAAACACGTT
GTACGGGTGATCCCACTGGTTCGAGTTGGAAACTCGGTACGGAATCGCCC
GGTATATCTTTAACGTTCGTACTTTGTTGGACACCCTTTGCTAGAAATCC
ATATTACATCAAAACACGTTGTACGGGTGATCCCACTGGTTCGAGTTGGA
AACTCGGTACGGAATCGACCGGTATATCTTTAACGTTCGTACTTTGTTAG
ACACCCTTTGTTAGAAATCCATATCACATCAAAACACATTGTACGGGTGA
TCCAAGGCTCGTACTTTGTCGGACACCCAGCTATATTGAAAAAATCCATA
TCAAATCAAAACACATTTTATGGGTGATCCCACTTGTACATCTTCAACGT
TCACTGGTTCGGGTTCGAAACTCAGTACGGAATCACCCGGTATATCAATA
AGGTTCGTACTCAGTTTGACACTTTTCGAATTCATGTCTGAAATACTGAA
ATACTTTGACAGGGCATTTGTTTTATACTGTGACTCTTTTGTGTTATTAC
AGCAATATAATAATAGTCCTTCTTCATTCTGATAATTATTATTAATTGTG
TGAACAACATCCTTCACTTTTGTGAATTGCCCTCTTATGGCGAACAACGT
CTCGACTAATGGCACCTGTTCATTATTGCACTTCTTGCAGCTGTATATCG
CTAAATGAATTGTTCGATATGCGTACATTACAATAGAGTCCTCATTTAAC
GGTTTAAGTTGGTATAATAATCTCCCTGGTTTGTATAAAAGTTCATCGCA
TGGTTGGGCTGAAGAGTATAAGGATATTGGTAAAACGATTTCTTccgtta
attttttttcgacgtCCTTNGAGTATAAGGATATTGGTAAAACGATTTCT
TccgttaattttttttcgacgtCCTTGATCGATGAAGTTTCGGGCATAGA
AATTTCCGTAGGTATTCCTGGAAAACGCGAAAGAGAAAATTATATACTGT
TACGAATACGAAAGAAAGCTTTTACGAATACATTATGGCAGGGAGACAAA
TTATAGGATGGCCGAAAAAGCTTTttaacattaaactaaaattcaCTAAT
TAATTTGGAAAAATAGATTTCGACCTAAATTCGATTTGACAATTGTAgg
Run BLAST on NCBI

transcript from alignment at scaffold_233:38907..47870+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053531 ID=TCONS_00053531|Name=TCONS_00053531|organism=Clytia hemisphaerica|type=transcript|length=8964bp|location=Sequence derived from alignment at scaffold_233:38907..47870+ (Clytia hemisphaerica)
AAACTAATGAGAGACCATACTGGTATAAATTGATAACATTGTACGAAATC
TCAGGTTTAATCAATATCAAGGTGTGGCTCTATAGTAACTTTACCgctaa
tatataaaaaaaatcacgaCAAATCAAAATATAGCAAAAACTAGACGAAA
TCCATTTAAAAATTCACATCAAAACATATTTAACATGTGATCCCACTTGT
TCGAGTTGAAAACTCGGCACGGAATCGCCCGGTATATCTTTAACGTTCGT
ACTTTGTTGGACACCCTTTGCTAGAAATCCATATTACATCAAAACACGTT
GTACGGGTGATCCCACTGGTTCGAGTTGGAAACTCGGTACGGAATCGCCC
GGTATATCTTTAACGTTCGTACTTTGTTGGACACCCTTTGCTAGAAATCC
ATATTACATCAAAACACGTTGTACGGGTGATCCCACTGGTTCGAGTTGGA
AACTCGGTACGGAATCGACCGGTATATCTTTAACGTTCGTACTTTGTTAG
ACACCCTTTGTTAGAAATCCATATCACATCAAAACACGTTGTACGGGTGA
TCCCACTGGTTCGAGTTGTAAACTCGGTACGGAATCGCCCGGTTTATCTT
TAACGTTCGTACTTTGTTGGACACCCAgccatattgaaaaaaaaatccat
gtCACATCAAAACACATTGTACGGGTGATCCAAGGCTCGTACTTTGTCGG
ACACCCAGCTATATTGAAAAAATCCATATCAAATCAAAACACATTTTATG
GGTGATCCCACTTGTACATCTTCAACGTTCACTGGTTCGGGTTCGAAACT
CAGTACGGAATCACCCGGTATATCAATAAGGTTCGTACTCAGTTTGATAC
TTTCNTCAGTACGGAGTCACCCGGTATATCAATAAGGTTTGTACTCAGTT
CAATACTTTTCGAGTTCATGTCTGAAAGCTTATACTGTGACTCTTTTGTG
TTATCACAGCAATATAATAAATGCCCTTCGGCATTCTGATTCTTAATAAA
CGTGTGAACAACATCCTTCACTGTTAATTGCCCTTGTAAGGCGAACGACG
TCTCGACTAATGGCACCTGTTCACTATTGCACTTCTTACAGCTGTATATC
GCTAAATGAATTTTTCGATACGCGTACATTACAATAGCGTCCTCATTTAA
CGGTTTAAGCTGGTATAATAATGTTCTCTCTCGTTNATAGCGTCCTCATT
TGACGATTTAAGCTGGTATAATAATATTCTTTTTCGTATGTATAAAAGTT
CATTGTATGGTTGGGATGAAGTGTATAAGGATATTGGTAAAGAGATTTCT
TCTGTTAATGTTTTTTCAACGTCCTTGATCGATGAAGTTTCGGGCATAGA
GATTTCCGTAGGTATCCCTGGAAAAGGCGAAAGAGAAAATTATATATTGT
TACGCATACGAAAAAAAGCTTTTAAGAATACATTTTGGCGGGCGGGGGAT
ACAAATTATTGGATGGCCGAAAAAGCTTTTTAACATTAAATTGAAATTCA
CTAATTAATTTGGAAAAATAGATTTCGACCTAAATTCGATTTGACAATTG
TAggaaatatttggaaaaaatttgttgataaatttaagaaaaaactgtTT
CTATAGAGCTAAAAGGATCTGCTTCCAAGTggaattcgacaatttttttt
caattgcaaAAATTCTCCGACATTTTATCATCTGACAAAGCTTTTTCTTG
AATTCTTTATCCGCAACTAAATCTTTTACCCGAAGTCAGAAGTTTCTGTT
CCCTTTTAATAAGgcgaaaaatagaaagaaagtgtttttgttgctatttt
tgataactttaaagataacttttatgtatgaacagtatgaagtaaaccct
gaatactaatgtatcaacgaaatgaaacgaaagtctgcggccgggtgaga
aaaaatttttcacccggccggtttccggaaacgctacatttctttatttt
tgcctaagatcaagctttttattgaaaatgatTCCTACTGACCTACGTCT
TGCATATATTCTGGTAGCACCAGTATTACAGTCAAATTTTGAGGAGTTTT
TGATATCAAATTGAGTTCCAACTTGCCGTCATCTTGTTCCGCCTCTGTAG
CGCCCTCTATAAAGACATCCAGGAAAGATTTCTCTTCCAGAATCTCTTTT
CCATGGTGTAAATATAATTGAAGGTGTGCCGGTATGAGCCATTCTTCCTC
AATGGATTTCTTTAATCGTGGAAATGATTGGCAAACCTAGTTTAGAAAAC
GAATAGTTAACCCAGCTGgcccacaacgttgtttcaacgtttatctaacg
ttatatggacgttgtgaatgttagaaaaacgttgaaacaacgttgtgtgc
cagctggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtggcaca
caacgttgtttcaacgtttatctaacgttatatggacgttgtgaatgtta
gaaaaacgttgaaacaacgttgtgtgccagctgggaaacgTAATAAAGTC
TTAAGAATCAGACTCTGAGTAGGACGCTGCGAAAACAGTCGCGctttttt
caactcaaaaaaatatttaacttcAACAGTATGATAACCAATACAGtttg
aataatttgatttttaaaaactgAAGATCTGCTATGCTACATTTAGATTC
TCAACAGTCTAAGCATGTCTTCGGCTGTTTGTcaaggtcttcggccgctg
gaaCGGCTCCTCgttcgatagctgtctacccaaaggtaggggaggcTGCC
AccctttctccctggattgcttcaCTTACCCTCGATTCTTCTCTTTAATT
AATGAGCGTCAAGTagagagacatcaagtaccatttttgtacTTTTGGAC
CTGAGCGGGGATTGAACCCATAACATTTCGCACCGCATGCTTTCCCAGAT
GGCAAacaacgttgcttcaacgttcatctaacgttatatggacgttgtga
acattagatgaacgttgaaacaacgttgtgtgccaactggttACCTTTTT
ACTATGGATTGTTTCATTAGCATACCCAGTCGGCACTCGACGTCGTatca
acgtccatttgacattcataacgtccaaataacgttatttggacgttaaa
acaacgttttgtgcttGCTGGGTATGTTGCAGGGAagtggaagaaaaaaa
atttgataaatgttACGGGAGTAATAAACCGGATTaattaatacattttt
ttggtgAAATAGTGAAATTTTTCGTTACAAATTTTCGtcccaaatttttt
taaaaaaccctGATTCTTTCATCACACCTCTCGGAAATGCGAAAATAATG
TGGAAATTTGGAGGAAGGAATCGACAGCTATGTATTCAACccgtttaaaa
aaaaacactcacctTAACATCTAGCTCCATCACTTTAGTTAGCGAtttca
gaacaatttttttcaaaccaaaCAATCGATAGTGAAACAAACTATACATA
TCCATTTTCTCCTTGTCTTCTAACGAAAGCTCAAGAATCGCATCTTCTTT
AAATTGATCTCGAACATAATAACCTGACAAGAATAATTGTTCTAAAAGGA
CGGACGTATGTTCTTCGTTCAAGTGCAGTCTTTTGTAGCGTGGGTGTCGT
AATTCGAACCAGCGATATGATAAACTATACTGgaatacaaaatgaaaatc
tctTGAGGTCATGACTCATGAACCCctccccccgcttgttaatttaaTGT
taatttaacgttatatggacgttttgaacgttagattaacgttgaaacaa
gaAGCCGTagcggcgtgaaggcccagctgacGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
tttgaaagtctcttgaccactaaagcaaagaaaatgttcaagaaagtatg
aattaacctcctcgcttcgaccgccatcttgttttgttttgaaaattgtt
ttggaggagcgcggaatcagaaaatatatcttttatagccagtatccgac
tttagcaagcttttccctctctagacggcaaaattaaaatgtgtggtact
ggttttaagcgccgtttctgcCTAAAGTGACacacggacggacagacaga
aaattgcaaatgaaaggcctacgcttagcgctgggccaataacgttgtgt
gtcagctgggaaaggatttcgatagaaatgtTCATCCACTGCGGTAGAGA
GTTCCACTCAttccaccgggactgtgagacaggggtggttTCAAAACTCG
AAGTAAACATGAAAAATTTGGTAATATTTtgagtaaaaatttgaatagga
aaaagatataaaactatccaaccttttgaaaaatgatttgtcTTAATTCT
TCCATCCAACATTCAGGTTTTTTGAGTTCATCCAGTAAGTTTTCGATCAA
CGTTTTGTTAAAGCTTTTGTATTTGTAGATCACTGACACTGATCTCAATT
CTTCTAGATTGCAATTCTGGATCGCACCAATGACCTCACTAGAAAGCGTT
CCTTAAAGAAAAGAATATCAACACTGATTAATTCTTTTAAATTGCAACAA
TGAcaattgccttaaaagtgaaaaatagtCCTTAAATCCGCTAAAGACGG
TTGCTCTTCGATTTTAAAAGGACATTAAAGGAAACTGATGtgccaaaaat
ttgatatttattaggatttcgaggttttatagattttccaattttttttg
agattttttcgcgagcataaacttttgcaagcataaactttcgcgagcat
aaacttttgcgagcataaacttttgcgagcataaacttttgcgagcataa
aTTTTCGAAGAATTTTCAATTACTTTTACTTTCGCTTGCGAAAATCCATA
AACGATCGATAATAATCCATATAATCCATAAGCTCACCTTTGACCCATGT
CGGGAAATACTTATATGCTAAAACAAGTTCCTTATCGTAATCTCCTCTTG
CGATATTCCTTATTTGAGCTGTATGCTTCAATACAGTTCCTTCGCTATAT
AACACTTGATATTGGCTTGGAATCTGAAGGGAATCTTCAATGAAGTTGGT
CAGATCTTGTAGACGNATAACACTTGGTATTGGCTTGGAATCTGAAGGGA
ATCTTCAATGAAGTTGGTCAGATCTTCTAAACTACATTGATCATCCTTTG
GTATCCACGATGCGAGTATTACATAATTTGTATTGcaaatgtttattttt
gccatttCTCATGTCTTTTTAGCGTCAGGCCTTcttaaattataaaaaaa
taatgaagaaaaaccctctttaaagaaaaaccgcagttgaaaaaaaaaca
gttggTCCACCAACGGACACTTTCCTGTCTTTCTAGAATTTTCAATGACC
ACTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTGCTTATCCTTTTTTGCCtggagaaaagattacgtcataaaaaa
gtttcgcgcgaacaaaaaaaagttgaagctaaaaacgaggaattaaccaa
aattctcaatagattttgaccgagattgtgATTCACTAATACAAAGGTTA
AAGCCATATATTTCTAATGATCGAAAGATATCGTTAAATTAAGTATCAAT
TTGAAAACTAATGAGAGACCATACCGGTATAAATTGATAACATTGTGCGG
AATCTCAGGTTTAATCAATAGCAAGGCGTGGCTATAGTTACTTTTACCGC
TAATATATCAAAAAATTCACGACAAATTAAAATAATAGCGAAAACTAGAT
GAAAGACATTTAAAAATTCACATCAAAACCCATTTAACATGTGATCCCAC
TTGTCGAGTTGGAAACTCGGCACCGAATCGCCCGGTATATCTTTAACGTT
CGTACTTTGTTGGACATCCAgccatattgaaaaaaaatccatatcACATC
AAAACACATTTAACATGTGATCCCAATTGTTCGAGTCGGAAACTCGGCAC
GGAATTACTCGGTATGTCTTAAACGTTCGTACTTAGTTGGACACCCAGCC
atattggaaaaaatccatATCACATCTGGTTCGAGTTGGAGACTCGGCAC
GGAATTACTCGGTATATCTTTAACGTTCGTACTTTGTTGGACACCCAGCC
ACATTGAAAAAATCCATGTCACATCAAAACACATTTAAAGGGTGATCCAA
CTTGTTCGAGTTGGAAACTCGGCACGGAAATCACCCGATATATCTTTAAT
GTTAGTATTTTGTTGGACACTCAGCcacattgaaaaaaatccatatcACA
TCAAAACACATTTTTTCACTGGTTCGAGTTCGAAACTCAGTACGGAATCA
CCCGGTATATCAATAAGGTTCGTACTCAGTTTGACACTTTTCGAATTCAT
GTCTGAAATACTGAAATACTTTGACAGGGCATTTGTTTTATACTGTGACT
CTTTTGTGTTATTACAGCAATATAATAATAGTCCTTCTTCATTCTGATAA
TTATTATTAATTGTGTGAACAACATCCTTCACTTTTGTGAATTGCCCTCT
TATGGCGAACAACGTCTCGACTAATGGCACCTGTTCATTATTGCACTTCT
TGCAGCTGTATATCGCTAAATGAATTGTTCGATATGCGTACATTACAATA
GAGTCCTCATTTAACGGTTTAAGTTGGTATAATAATCTCCCTGGTTTGTA
TAAAAGTTCATCGCATGGTTGGGCTGAAGAGTATAAGGATATTGGTAAAA
CGATTTCTTccgttaattttttttcgacgtCCTTNGAGTATAAGGATATT
GGTAAAACGATTTCTTccgttaattttttttcgacgtCCTTGATCGATGA
AGTTTCGGGCATAGAAATTTCCGTAGGTATTCCTGGAAAACGCGAAAGAG
AAAATTATATACTGTTACGAATACGAAAGAAAGCTTTTACGAATACATTA
TGGCAGGGAGACAAATTATAGGATGGCCGAAAAAGCTTTttaacattaaa
ctaaaattcaCTAATTAATTTGGAAAAATAGATTTCGACCTAAATTCGAT
TTGACAATTGTAgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033791XLOC_033791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053531-exon-scaffold_233-1491911889:38907..39433TCONS_00053531-exon-scaffold_233-1491911889:38907..39433Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1510915933:38907..39433TCONS_00053531-exon-scaffold_233-1510915933:38907..39433Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1575043694:38907..39433TCONS_00053531-exon-scaffold_233-1575043694:38907..39433Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1491911889:39562..39736TCONS_00053531-exon-scaffold_233-1491911889:39562..39736Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1510915933:39562..39736TCONS_00053531-exon-scaffold_233-1510915933:39562..39736Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1575043694:39562..39736TCONS_00053531-exon-scaffold_233-1575043694:39562..39736Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1491911889:47174..47870TCONS_00053531-exon-scaffold_233-1491911889:47174..47870Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1510915933:47174..47870TCONS_00053531-exon-scaffold_233-1510915933:47174..47870Clytia hemisphaericaexon
TCONS_00053531-exon-scaffold_233-1575043694:47174..47870TCONS_00053531-exon-scaffold_233-1575043694:47174..47870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:38907..47870 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217683	0	0.109293	0.0531251	0.977138	0.416003	0.891314	0.949434	0.0603787	0.159817	0.370273	0.0825986	0.0868725	0.0643388	0.110157	0.303433	0.772183	0.520493	0.67406	0.0797527	0.405489	0.135048	0.318431	0.683315	0.670321	0.0732719	0.0361207	0.209637	0.177331	0.218407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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