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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053532 ID=TCONS_00053532|Name=TCONS_00053532|organism=Clytia hemisphaerica|type=transcript|length=1453bp
ccgagattgtgATTCACTAATACAAAGGTTAAAGCCATATATTTCTAATG
ATCGAAAGATATCGTTAAATTAAGTATCAATTTGAAAACTAATGAGAGAC
CATACCGGTATAAATTGATAACATTGTGCGGAATCTCAGGTTTAATCAAT
AGCAAGGCGTGGCTATAGTTACTTTTACCGCTAATATATCAAAAAATTCA
CGACAAATTAAAATAATAGCGAAAACTAGATGAAAGACATTTAAAAATTC
ACATCAAAACCCATTTAACATGTGATCCCACTTGTCGAGTTGGAAACTCG
GCACCGAATCGCCCGGTATATCTTTAACGTTCGTACTTTGTTGGACATCC
AgccatattgaaaaaaaatccatatcACATCAAAACACATTTAACATGTG
ATCCCAATTGTTCGAGTCGGAAACTCGGCACGGAATTACTCGGTATGTCT
TAAACGTTCGTACTTAGTTGGACACCCAGCCatattggaaaaaatccatA
TCACATCTGGTTCGAGTTGGAGACTCGGCACGGAATTACTCGGTATATCT
TTAACGTTCGTACTTTGTTGGACACCCAGCCACATTGAAAAAATCCATGT
CACATCAAAACACATTTAAAGGGTGATCCAACTTGTTCGAGTTGGAAACT
CGGCACGGAAATCACCCGATATATCTTTAATGTTAGTATTTTGTTGGACA
CTCAGCcacattgaaaaaaatccatatcACATCAAAACACATTTTTTCAC
TGGTTCGAGTTCGAAACTCAGTACGGAATCACCCGGTATATCAATAAGGT
TCGTACTCAGTTTGACACTTTTCGAATTCATGTCTGAAATACTGAAATAC
TTTGACAGGGCATTTGTTTTATACTGTGACTCTTTTGTGTTATTACAGCA
ATATAATAATAGTCCTTCTTCATTCTGATAATTATTATTAATTGTGTGAA
CAACATCCTTCACTTTTGTGAATTGCCCTCTTATGGCGAACAACGTCTCG
ACTAATGGCACCTGTTCATTATTGCACTTCTTGCAGCTGTATATCGCTAA
ATGAATTGTTCGATATGCGTACATTACAATAGAGTCCTCATTTAACGGTT
TAAGTTGGTATAATAATCTCCCTGGTTTGTATAAAAGTTCATCGCATGGT
TGGGCTGAAGAGTATAAGGATATTGGTAAAACGATTTCTTccgttaattt
tttttcgacgtCCTTNGAGTATAAGGATATTGGTAAAACGATTTCTTccg
ttaattttttttcgacgtCCTTGATCGATGAAGTTTCGGGCATAGAAATT
TCCGTAGGTATTCCTGGAAAACGCGAAAGAGAAAATTATATACTGTTACG
AATACGAAAGAAAGCTTTTACGAATACATTATGGCAGGGAGACAAATTAT
AGGATGGCCGAAAAAGCTTTttaacattaaactaaaattcaCTAATTAAT
TTG Run BLAST on NCBI transcript from alignment at scaffold_233:46376..47828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053532 ID=TCONS_00053532|Name=TCONS_00053532|organism=Clytia hemisphaerica|type=transcript|length=1453bp|location=Sequence derived from alignment at scaffold_233:46376..47828+ (Clytia hemisphaerica)
ccgagattgtgATTCACTAATACAAAGGTTAAAGCCATATATTTCTAATG
ATCGAAAGATATCGTTAAATTAAGTATCAATTTGAAAACTAATGAGAGAC
CATACCGGTATAAATTGATAACATTGTGCGGAATCTCAGGTTTAATCAAT
AGCAAGGCGTGGCTATAGTTACTTTTACCGCTAATATATCAAAAAATTCA
CGACAAATTAAAATAATAGCGAAAACTAGATGAAAGACATTTAAAAATTC
ACATCAAAACCCATTTAACATGTGATCCCACTTGTCGAGTTGGAAACTCG
GCACCGAATCGCCCGGTATATCTTTAACGTTCGTACTTTGTTGGACATCC
AgccatattgaaaaaaaatccatatcACATCAAAACACATTTAACATGTG
ATCCCAATTGTTCGAGTCGGAAACTCGGCACGGAATTACTCGGTATGTCT
TAAACGTTCGTACTTAGTTGGACACCCAGCCatattggaaaaaatccatA
TCACATCTGGTTCGAGTTGGAGACTCGGCACGGAATTACTCGGTATATCT
TTAACGTTCGTACTTTGTTGGACACCCAGCCACATTGAAAAAATCCATGT
CACATCAAAACACATTTAAAGGGTGATCCAACTTGTTCGAGTTGGAAACT
CGGCACGGAAATCACCCGATATATCTTTAATGTTAGTATTTTGTTGGACA
CTCAGCcacattgaaaaaaatccatatcACATCAAAACACATTTTTTCAC
TGGTTCGAGTTCGAAACTCAGTACGGAATCACCCGGTATATCAATAAGGT
TCGTACTCAGTTTGACACTTTTCGAATTCATGTCTGAAATACTGAAATAC
TTTGACAGGGCATTTGTTTTATACTGTGACTCTTTTGTGTTATTACAGCA
ATATAATAATAGTCCTTCTTCATTCTGATAATTATTATTAATTGTGTGAA
CAACATCCTTCACTTTTGTGAATTGCCCTCTTATGGCGAACAACGTCTCG
ACTAATGGCACCTGTTCATTATTGCACTTCTTGCAGCTGTATATCGCTAA
ATGAATTGTTCGATATGCGTACATTACAATAGAGTCCTCATTTAACGGTT
TAAGTTGGTATAATAATCTCCCTGGTTTGTATAAAAGTTCATCGCATGGT
TGGGCTGAAGAGTATAAGGATATTGGTAAAACGATTTCTTccgttaattt
tttttcgacgtCCTTNGAGTATAAGGATATTGGTAAAACGATTTCTTccg
ttaattttttttcgacgtCCTTGATCGATGAAGTTTCGGGCATAGAAATT
TCCGTAGGTATTCCTGGAAAACGCGAAAGAGAAAATTATATACTGTTACG
AATACGAAAGAAAGCTTTTACGAATACATTATGGCAGGGAGACAAATTAT
AGGATGGCCGAAAAAGCTTTttaacattaaactaaaattcaCTAATTAAT
TTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053532-exon-scaffold_233-1491911889:46376..47828 | TCONS_00053532-exon-scaffold_233-1491911889:46376..47828 | Clytia hemisphaerica | exon |
| TCONS_00053532-exon-scaffold_233-1510915933:46376..47828 | TCONS_00053532-exon-scaffold_233-1510915933:46376..47828 | Clytia hemisphaerica | exon |
| TCONS_00053532-exon-scaffold_233-1575043694:46376..47828 | TCONS_00053532-exon-scaffold_233-1575043694:46376..47828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:46376..47828 + |
Blast
The following BLAST results are available for this feature:
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