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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053539 ID=TCONS_00053539|Name=TCONS_00053539|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CGAAAAAAAGGCAATGATATTACCTGGCACTATCGGAGATTACATCAATA
GTGGAACAAATTATGAAAAACGGAACAAGTTATACTGATTACCCAGAATT
CAAATTCGCCAGAACTGTCAATCTATATTTTCCACCTGTCATAGTTTTGA
TAGGATGTGTTGGAAATTTGttgagtttttttatttacatcAAAAGGAAA
TACAAGGACAAGGTTGCACCTGTATATATTCTAAGCCTGTCAATCATCGA
CTCGATCAATCTGGTCATCGGATTACTACAATATTGGCTGATGTTCAATT
TTTACCCAGAAAACATTGCACCTCTTCATTGTCACGTGATGTTTTTCTTG
GTCAATGCTATGGCTAACCATTCACATTGGGTTGTCATCGCATTCACTTT
CGACCGGTTTTTAGCTGTTTGGTTTCCATTTTGGACTCGACAATATCAAA
ACCGACATCGCGCATGGATCACAGTCATCATAATTGGTGTCATATCATAT
GCCAAGAACCTTCACTATATATGGACCGCAGAATTTATCTACCagccaaa
aacgaaagtggcaTCATGCGGATTTGGTATACGCAATAAGAATCAATGGG
TACTCGATTATCAATTATTTGAAATCGCTGTTTCCTCATTGATTCCTTTT
ATAATTATTGTCGTTTTGAATAGTTCGATTGTTTACCGAATGCATCGAGA
TGGTAATTTCAGTAAAGCTCAAAGACGACATCGGGGCCATAAACTCAAAT
CTCAGTTTGTAAACACTGGGAATTGTAAGTTGAAAACAAGCCAACGAcaa
caagaaaacaacaaaTCTAACAATCACTCGATACCTACTTATGATACAAA
GCCTAAAACGGATTGTGCAACTGCTAATTCTTATAATCCACTCAACGAAA
CACATCCAACGTTACCAAAGCTAGCAAATCAGGCGCCAGATTACAATCCA
CACAAAGACAAAGACCAGAACTCAATAAAACCTAAACCGCATCTCACAAT
CCCAACGTCCTCAAAGCGACGTCAAACAATTGTACCGTCAGATTCCATAC
AACAAATCACGTCAGAATCACCAGAAAACATTAAACCTAAAAGACTTTTC
CATTACGGTCTAACAATCTCTTTGCTTCTCGTTTCCAGCGCCTTTGTGGT
TCTAGTATCACCTTTACTAGTGCTCAGGTTCTATTACATGAACCAAGAAC
ATATAACTCCACATCATAAAGCTGTTTACGCCATGAAATACCAGATCTGT
CAGAAATTATGGTATTCAAATAATGCAGTAAACTTTTTCTTATATTCATT
GTCAGGACGCTCTTTTAGATCAGATCTTAAAGCAACAATTCTTGGATTAT
ATACTAGAATGTTTCCAAAAGGTAAAACTGACAGACGCTCTAACAGTAGG
ACGACTTTGGACAGCGTGTTACGTTTTTCAGATAGTAGCACGACTATTGA
TACAGCGAATTCGGTCAAAGAAAATAACTCCTGACCTATGGATTTCAAGC
GTAGTACGGAGAAAAGTACAGCCcggactctcgctaattcgaattcAGAT
GGGGAATCTtttttattcg Run BLAST on NCBI transcript from alignment at scaffold_233:195073..201206+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053539 ID=TCONS_00053539|Name=TCONS_00053539|organism=Clytia hemisphaerica|type=transcript|length=6134bp|location=Sequence derived from alignment at scaffold_233:195073..201206+ (Clytia hemisphaerica)
CGAAAAAAAGGCAATGATATTACCTGGCACTATCGGAGGTATGCATCAAA
AGCCGATGATACGTAGGGAACGAGGTCGCGTTCCGGATCACTCGCCTTAG
CTAgagaaagaagtttttttttgaaaaattgatccTTCGAGGCTTTTTCA
TAAAAGTGttttgattttcgattttcgaaaaatgttctcaaatgtcctag
tactttttcaaatttttaattttaccatttttgacTTTATTATATGTGAG
AAACCGCTACCGGACTGTTGAAGAGACTAAACCCTTAGTAGAGACACTAA
CTGAAGTGATAAAACCGTCAAACTATAAAAGAATTTCTTCCTTAAGATTT
AAAACTAAAATAACCAGGCGATGTTAACTGAAAACGTAAACATGTGATGG
ACNctctattgtttaagaacaataaaATGCTAATCATAATGCAAGACTGA
TATAGGGGcggacacttgcttataaaaaaaaacacgtaaTAAAAATCTGT
AACCATCCTTTATTTCTTTGTTAAGGTCTACTCGCGTTTCTTAAGACGTA
GGACATAGGCTACTAAGTACTTTGTTTGTAATTGCGTGTCAAATTCCAaa
atattgttgtttttttttgtcagtgGTATTATAATGATGTAGCAATAGCT
ACAGTAgcgattttttgtgtttttgttttgctGTGACAGTATGTTTGGTG
AGAATGTTTTAATTTCAAACATTTGAATTTCATATGATGATTTTCAGAAG
ATGCAATAAGACGAACATTGATTATATCAATGGCTATCTGGTTTAAGGCT
ACAAGATTTTTAATTTAAGTTAGTTAGGTTTAATTTTAATTGAAGTTACG
TTATCTTACGCGTTCGGAAAAAAGGCAATGATAGGGTATTACCTGGCACT
ATCAGAGGTATGCATCAAAAGTCGATGATACGTAGGGAACGAGGTCGTGT
TCCGGACCACTCGCCTTAGCTAgagaaagaagttttttttgaaaaattga
tccTTCGAGGCTTTTTCATAaaagtgttttgatttttgattttcgaaaat
gttctcaaatgtcctagtactttttcaaatttttaattttaccatttttg
acTTTATTATATGTGAGAAACCGCTACCGGACTGTTGAAGAGACTAAACC
CTTAGTAGAGACACTAACTGAAGTGATAAAACCGTCAAACTATAAAAGAA
TTTCTTCCTTAAGATTTAAAACTAAAATAACCAGGCGATGTTAACTGAAA
ACGTAAACATGTGatggacggtgaaaaagaatgcggctattatattttga
tttttccctgAAAACGTAAACATTTAAGAAATTGTTAAGAGATTGATGAA
AATTCaaatattgcaaaatcttgaaaattggaACGGAATAGCAGAAGATA
TcggaaattttcttttcacaaGTGCCCTAGAACAAAATACCGGTAGAATA
TAACAAGAATAGgtaattaagggctctgaccatagtgaattttttacatt
tgccacttacaaaatatgAAATTCTGCCTAATGTAGTAGACAAAactttg
acatgttatacattttctacTAGGCCAACTATTCgcgagtctgaaaattt
aaaaatcgcaatgaaaaaatttgatgaagaagaaaatgaagacttttgca
aagaagagtattttaactttgaatagcttagtttcggcgaagaaaaaaca
ttttgaaaagatttttgcggtagatggtgtatttTTTATCGAACTCAAAt
taattttgcggaaaatttttctgaaagcttatatgcttcaaaatcttgaa
aatagtgctttttgaccaattttccgtCCCAACTTTTCACAGAAAAACAA
CGNaaatttttctctgattttcaaaaatttcctacccttagtgagacttt
tttgtaattttttctctcaaaatctaattttttttctaaaaatcgtgatt
tttcccaaccttagagagactactttgaaattNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgcattaatttagaaaatttttccgaaaattttaaaac
agttcaattctttgcggacagtttgaaaaaacttcgaaacaaaaaggtta
attactcattaaaacttagcactttttctaaaggaaggtgatgcaacata
ttactaacgtctttttaaatgtccataacgtcatttttccaattaaattc
ttaattacacTTAAGGgattttatgttcaaatactaaaatcaattttcag
actatggtcagagcccttaaagtcTTCTTTAACTTcagatttttctttct
tttaaagatttagtttttaaataagagtgataccGTTTACTTACTCAATT
CGTTGGGCCCCTTTCAAATAAGTTTTGAAATCCTATCTACTTTCAAACCA
CTAACATACGCTTGAGTCCCACGATAGAAGCTACAGATCATAAGTGTTGG
CCCCCCTACAATTTATTacgtattttttaaatgaagatcCCCTCGCTTTA
GCCAAAACCAGGGATATCCTCTGGCGACTATTAATAACATAATAAATCCT
TGAATACACTGGGACGAATTTGTTCTACTggtaattttcttttatttgta
gATTACATCAATAGTGGAACAAATTATGAAAAACGGAACAAGTTATACTG
ATTACCCAGAATTCAAATTCGCCAGAACTGTCAATCTATATTTTCCACCT
GTCATAGTTTTGATAGGATGTGTTGGAAATTTGttgagtttttttattta
catcAAAAGGAAATACAAGGACAAGGTATGTTaaaaatactttaattagg
TACCTACAATGGTGGTCAGAATATGTTGGcattttgagtattttggcAAC
TTTTGGCGTTTTACTttatttaatcggatatttcgatttgggaggggtat
AATGGCTTCCATGCTTTTTTTTCTctggcgctatcagtaagcattaaaat
ttcaataatacGCAGGATGAAACGTCTCAtaagtctaaatagcctatatt
gGTGTAAAATACACtccgtaattcgaatctttttctaattcgaataaaat
cCTTATTCACTCGATGCTTTGAGATAAGGATAAATAAGGGACAGCCAACA
ACTATATTATAAAATTTTCGTAACGCTGTTTTTAGGTTGCACCTGTATAT
ATTCTAAGCCTGTCAATCATCGACTCGATCAATCTGGTCATCGGATTACT
ACAATATTGGCTGATGTTCAATTTTTACCCAGAAAACATTGCACCTCTTC
ATTGTCACGTGATGTTTTTCTTGGTCAATGCTATGGCTAACCATTCACAT
TGGGTTGTCATCGCATTCACTTTCGACCGGTTTTTAGGTATATGTTTTAT
TTTGTGGGTAGACTGGCACGGGACTGGTACAAATTTTTGTGTACAGGCGT
TGCGATATCTATCAAGCtgcattgaaattgaaattctgGAAAGGTCAAAA
GATTAAAAGATGAAAGATCCTTGATCGAAAAGGAGCATTATCTTGTTTCA
ATTATTCTAACccaagttttgaggattttactttatataaaagaaTTTAT
CTGCTTTTTTGGGACACATTAAGATTGTAGCTcataaaaatttacatatt
atcatataacattcatattactgtattagtactagtaatcgtatggtttg
gagtgcaattaacgattaatcacgagtaacaaaggagaaaatagtaattt
gcacgacaaaacatacgattccgaggtaggttgcgtttagaccaactggc
atttgtaatttggcatttgctcatgagggattcgattttaatagcttttc
cattgtattttctgtcatggcatttaagNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaatgtcattttt
tctctttgttttggttcctttgtttgatttgaaatgccagaaaaggggat
tcctttgctcaaaatggcatttaaaatgccaacgaaatgccaacacgctg
gcatcattaggcatttgacaaaccgaacaattgcgcggaccaatagaatt
caaaagaatactgcaagcaattacaaatgccaggctggtctaaacgcagc
cgtaatcgtcagtaaataatcattttgggagagacttgggagagaaaaga
ataaggggagaAAAGTgtcccccgccgaagagtgcaaaaagtggtaatag
tgcaattaacgattaattgcactcctctaaaccaatcagattcgagtaat
tttgcacggctgacgattacacGAATTATAAATGACCCTAGTTTACCTTT
TTAACACTGTGTTCATTTTCTCTTTATAGCTGTTTGGTTTCCATTTTGGA
CTCGACAATATCAAAACCGACATCGCGCATGGATCACAGTCATCATAATT
GGTGTCATATCATATGCCAAGAACCTTCACTATATATGGACCGCAGAATT
TATCTACCagccaaaaacgaaagtggcaTCATGCGGATTTGGTATACGCA
ATAAGAATCAATGGGTACTCGATTATCAATTATTTGAAATCGCTGTTTCC
TCATTGATTCCTTTTATAATTATTGTCGTTTTGAATAGTTCGATTGTTTA
CCGAATGCATCGAGATGGTAATTTCAGTAAAGCTCAAAGACGACATCGGG
GCCATAAACTCAAATCTCAGTTTGTAAACACTGGGAATTGTAAGTTGAAA
ACAAGCCAACGAcaacaagaaaacaacaaaTCTAACAATCACTCGATACC
TACTTATGATACAAAGCCTAAAACGGATTGTGCAACTGCTAATTCTTATA
ATCCACTCAACGAAACACATCCAACGTTACCAAAGCTAGCAAATCAGGCG
CCAGATTACAATCCACACAAAGACAAAGACCAGAACTCAATAAAACCTAA
ACCGCATCTCACAATCCCAACGTCCTCAAAGCGACGTCAAACAATTGTAC
CGTCAGATTCCATACAACAAATCACGTCAGAATCACCAGAAAACATTAAA
CCTAAAAGACTTTTCCATTACGGTCTAACAATCTCTTTGCTTCTCGTTTC
CAGCGCCTTTGTGGTTCTAGTATCACCTTTACTAGTGCTCAGGTTCTATT
ACATGAACCAAGAACATATAACTCCACATCATAAAGCTGTTTACGCCATG
AAATACCAGATCTGTCAGAAATTATGGTATTCAAATAATGCAGTAAACTT
TTTCTTATATTCATTGTCAGGACGCTCTTTTAGATCAGATCTTAAAGCAA
CAATTCTTGGATTATATACTAGAATGTTTCCAAAAGGTAAAACTGACAGA
CGCTCTAACAGTAGGACGACTTTGGACAGCGTGTTACGTTTTTCAGATAG
TAGCACGACTATTGATACAGCGAATTCGGTCAAAGAAAATAACTCCTGAC
CTATGGATTTCAAGCGTAGTACGGAGAAAAGTACAGCCcggactctcgct
aattcgaattcAGATGGGGAATCTtttttattcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053539-exon-scaffold_233-1491911889:195073..195110 | TCONS_00053539-exon-scaffold_233-1491911889:195073..195110 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1510915933:195073..195110 | TCONS_00053539-exon-scaffold_233-1510915933:195073..195110 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1575043694:195073..195110 | TCONS_00053539-exon-scaffold_233-1575043694:195073..195110 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1491911889:197874..198047 | TCONS_00053539-exon-scaffold_233-1491911889:197874..198047 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1510915933:197874..198047 | TCONS_00053539-exon-scaffold_233-1510915933:197874..198047 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1575043694:197874..198047 | TCONS_00053539-exon-scaffold_233-1575043694:197874..198047 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1491911889:198408..198609 | TCONS_00053539-exon-scaffold_233-1491911889:198408..198609 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1510915933:198408..198609 | TCONS_00053539-exon-scaffold_233-1510915933:198408..198609 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1575043694:198408..198609 | TCONS_00053539-exon-scaffold_233-1575043694:198408..198609 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1491911889:200052..201206 | TCONS_00053539-exon-scaffold_233-1491911889:200052..201206 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1510915933:200052..201206 | TCONS_00053539-exon-scaffold_233-1510915933:200052..201206 | Clytia hemisphaerica | exon |
| TCONS_00053539-exon-scaffold_233-1575043694:200052..201206 | TCONS_00053539-exon-scaffold_233-1575043694:200052..201206 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:195073..201206 + |
Blast
The following BLAST results are available for this feature:
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