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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053543 ID=TCONS_00053543|Name=TCONS_00053543|organism=Clytia hemisphaerica|type=transcript|length=1227bp
AATTTGAAAGATCATAATTTGCCCGATTTGGGAAATTCTACACGAAGAAT
CTTCCTGGTACAGTACTGGGACTAAAAACGACAGTTTAAATCTCACCAAT
TGGTTGGTAAGAGGAGCCAAACCATACTGTTTGGGGCAGTGATGGGACAG
AAAATCATAGTTTTAAAAAATCACCCTAAGTCGTTTGTAAATGGAGCCAA
ACCATTTTTACCTTTCCGATTATACCGCTTCCTGCCCTTCTCTCGAATAG
GTATACAATGATTATGGTAAACTTTCAACTTCAAACATGGATTTGTAACA
CGGTAATTTAATTCCTTTCGAAAATACCATATCAATACATTTTCCATACC
AGCAGAACTAGGAATGATATCAATCTCTTTGAGCATTTCTTTGGGAAATG
TTTTATCTGAATAAAACACGAAAGTGTCATGTGAGCCCAGATATATAGAA
CCCGCGTTGCAAGAAGCAGTCTGTGCAGCATTGCATGGGAACTTTTCAGT
TATAGAGTATCTCGTCAAAGCATACATGATTCTTTGGTTACGGAGGAGGT
TAAAATTAATATCCTCCCAACCTTCTCCAAGAAAATTGTCTTGATGAATC
AACATAACgtatttgtttttcaaatatttttgaatgtaATCTAAGTTAAT
AGCAACAGTAGGGTCACGTCTTGTCAAATGTAAAACcatttttttactat
ttttcattttcaaacgaTGTAAATAACTCATCACTGCANAATGTAAAACc
atttttttactgtttttcattttcaaacgaTGTAAATAGCTCATTACTGC
TGGATGAAAATATAGAATATGAACAGCTGCTACTTTTGGATGATTCAAAT
TAGCTTGTAAAGATGTCTCTATTTCATGTTGCCTGTCTGATAGTTCATTC
ATGGTTGGTGGTCGCAAATTATTATAAAGAAGATTAGCAGAATAAGCTTT
GTGTTGCACCAAAACAATGTTTGTTACCAAATGGAATTTTCCTTCATCTT
GTATATCAAGCTCTGCATCATTACTCCATTTCTCTGAGAGTTGAGCTTGG
TTCACAGACTGGAAGAAATCTTCTTGTATAGGCACATGAGGTGGTGGTCC
CACATGTCTAATAAAAGCTAACCATGACAAAACAACAAACGATAAAATAA
CTGTCAATACCAAAAATATCTTCTTGAAAGACCAAAACATTATTATTTTG
Taactaaatataaaaaaataatatcat Run BLAST on NCBI transcript from alignment at scaffold_233:344693..346017+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053543 ID=TCONS_00053543|Name=TCONS_00053543|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at scaffold_233:344693..346017+ (Clytia hemisphaerica)
AATTTGAAAGATCATAATTTGCCCGATTTGGGAAATTCTACACGAAGAAT
CTTCCTGGTACAGTACTGGGACTAAAAACGACAGTTTAAATCTCACCAAT
TGGTTGGTAAGAGGAGCCAAACCATACTGTTTGGGGCAGTGATGGGACAG
AAAATCATAGTTTTAAAAAATCACCCTAAGTCGTTTGTAAATGGAGCCAA
ACCATTTTTACCTTTCCGATTATACCGCTTCCTGCCCTTCTCTCGAATAG
GTATACAATGATTATGGTAAACTTTCAACTTCAAACATGGATTTGTAACA
CGGTAATTTAATTCCTTTCGAAAATACCATATCAATACATTTTCCATACC
AGCAGAACTAGGAATGATATCAATCTCTTTGAGCATTTCTTTGGGAAATG
TTTTATCTGAATAAAACACGAAAGTGTCATGTGAGCCCAGATATATAGAA
CCCGCGTTGCAAGAAGCAGTCTGTGCAGCATTGCATGGGAACTTTTCAGT
TATAGAGTATCTCGTCAAAGCATACATGATTCTTTGGTTACGGAGGAGGT
TAAAATTAATATCCTCCCAACCTTCTCCAAGAAAATTGTCTTGATGAATC
AACATAACgtatttgtttttcaaatatttttgaatgtaATCTAAGTTAAT
AGCAACAGTAGGGTCACGTCTTGTCAAATGTAAAACcatttttttactat
ttttcattttcaaacgaTGTAAATAACTCATCACTGCANAATGTAAAACc
atttttttactgtttttcattttcaaacgaTGTAAATAGCTCATTACTGC
TGGATGAAAATATAGAATATGAACAGCTGCTACTTTTGGATGATTCAAAT
TAGCTTGTAAAGATGTCTCTATTTCATGTTGCCTGTCTGATAGTTCATTC
ATGGTTGGTGGTCGCAAATTATTATAAAGAAGATTAGCAGAATAAGCTTT
GTGTTGCACCAAAACAATGTTTGTTACCAAATGGAATTTTCCTTCATCTT
GTATATCAAGCTCTGCATCATTACTCCATTTCTCTGAGAGTTGAGCTTGG
TTCACAGACTGGAAGAAATCTTCTTGTATAGGCACATGAGGTGGTGGTCC
CACATGTCTAATAAAAGNTTACTCCATTTCTCTGAGAGTTGAGCTTGGTT
CACAGACTGGAAGAAATCTTCTTGTATAGGCACATGAGGTGGTGGCCCCA
CATGTCTAATAAAAGCTAACCATGACAAAACAACAAACGATAAAATAACT
GTCAATACCAAAAATATCTTCTTGAAAGACCAAAACATTATTATTTTGTa
actaaatataaaaaaataatatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053543-exon-scaffold_233-1491911889:344693..345795 | TCONS_00053543-exon-scaffold_233-1491911889:344693..345795 | Clytia hemisphaerica | exon |
| TCONS_00053543-exon-scaffold_233-1510915933:344693..345795 | TCONS_00053543-exon-scaffold_233-1510915933:344693..345795 | Clytia hemisphaerica | exon |
| TCONS_00053543-exon-scaffold_233-1575043694:344693..345795 | TCONS_00053543-exon-scaffold_233-1575043694:344693..345795 | Clytia hemisphaerica | exon |
| TCONS_00053543-exon-scaffold_233-1491911889:345894..346017 | TCONS_00053543-exon-scaffold_233-1491911889:345894..346017 | Clytia hemisphaerica | exon |
| TCONS_00053543-exon-scaffold_233-1510915933:345894..346017 | TCONS_00053543-exon-scaffold_233-1510915933:345894..346017 | Clytia hemisphaerica | exon |
| TCONS_00053543-exon-scaffold_233-1575043694:345894..346017 | TCONS_00053543-exon-scaffold_233-1575043694:345894..346017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:344693..346017 + |
Blast
The following BLAST results are available for this feature:
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