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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053545 ID=TCONS_00053545|Name=TCONS_00053545|organism=Clytia hemisphaerica|type=transcript|length=3880bpRun BLAST on NCBI protein sequence of TCONS_00053545-protein >TCONS_00053545-protein ID=TCONS_00053545-protein|Name=TCONS_00053545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp MTIKFKPNTSDEAPLITKDNNSNHTTHSFAEIDSDDEDGLNEKPFKKNDIRun BLAST on NCBI transcript from alignment at scaffold_233:411630..434926+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053545 ID=TCONS_00053545|Name=TCONS_00053545|organism=Clytia hemisphaerica|type=transcript|length=23297bp|location=Sequence derived from alignment at scaffold_233:411630..434926+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:411630..434926+ >TCONS_00053545 ID=TCONS_00053545|Name=TCONS_00053545|organism=Clytia hemisphaerica|type=CDS|length=12075bp|location=Sequence derived from alignment at scaffold_233:411630..434926+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053545 vs. Swiss-Prot (Human)
Match: RAB3D (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.019e-31 Identity = 61/182 (33.52%), Postives = 106/182 (58.24%), Query Frame = 3
Query: 2634 NTFVPPKDALIEENCVGDFNNEYNIVIIGDRGVGKSSILFKHTTDMYSQTYLPTIGVDFRRSVIKSRDNDINATLKLWDTPGTIPEIKPTSKDLFRSASAFLCIYDVTNIESYNNMYHWMNLIRKYSLDQSQLVVIGNKTDLTNERRLSKEDGMRLAASYGAKFMETNVPQKRNIQKLFERL 3179
+T P+DA + +F+ + +++IG+ VGK+S LF++ D ++ ++ T+G+DF+ + D I L++WDT G + + +R A FL +YD+ N ES+ + W I+ YS D +Q++++GNK DL +ER + EDG RLA G +F E + + N++++FERL
Sbjct: 6 DTQAGPRDAADQ-----NFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIK--LQIWDTAGQ-ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 The following BLAST results are available for this feature:
BLAST of TCONS_00053545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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