TCONS_00053552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053552
Unique NameTCONS_00053552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053552 ID=TCONS_00053552|Name=TCONS_00053552|organism=Clytia hemisphaerica|type=transcript|length=3348bp
TTTCCATCAAACCAGCGTGGTCCCGCATTCTAAACCCTTCTTCTCTTTTC
TCCAACTCGGAGAAAGCACGTGTGGGATTTTcccaaattcaaaaaattgt
aaagactttttaccacaaatttactttgaaaagtaaaaaataagcttCTA
CTGCTAATAATACGACAACATGGCTGACGAATGGGATGAAGGAACATCCT
CAGGAAACACGGGATTTGGTGGTGGAAGCTCAGGTGGCTTTGGAGGTGGA
AGCTCAGGTGGTTTTGGCGGTGACTCAAATGATAATGATGACAGCGGTGG
TAGTTTCAGAGGTGGAAGAGGTAGAGGACGTGGTCGTGGAAGAGGCAGAG
GACGCGGTCGTGGTGGATTTGGAGGTGGTGATGGAGATGCAGCTGGAGGT
GGTGGTTTTGGTGGAGGAGATGACACTGGAGAGGTTGATGAAAATGGTGA
ACCCATTAGACCTCTTCATGAAGTTGATCCAGACAAACCAGCACCAGTTA
CATATGTACCCCCAGAACCATCAGAGGCTGAAGAAGAGATTTTCCAAACA
ATTGCTCAAGGAATCAATTTCGATCAATATGATAATATTCCTGTTGAAAT
CACTGGCCCTGGAGAGATGCCAACTGCTGTCAGAAGTTTTGAAGAGGCTG
GTCTTGCACCTGGGGTCTTAGAGAACATCAAGAAAGCTAAATATACTAAA
CCAACACCTGTCCAAAAATATGCCCTCCCGGCTGTGTTAGCAAAACGTGA
TCTGATGGCTTGTGCCCAAACTGGATCAGGAAAAACAgcTGCTTTCCTCT
TACCTGTGTTGACTGGCATACTTGAACATAGAGATGAGTTCACCAGTCAG
TTAAGTGAGGTTCAAGCACCTATTGCTTTGGTAATTGCACCAACTCGTGA
ACTTGCAACACAGATCTTTAATGAAGCACGAAAATTCTCTCATGGAACCA
GCATTCGACCAGTTGTTGTTTATGGTGGTGTCAGTGTTGCACATCAGTTG
CGCCAGGTTGAGGCTGGTTGTCACCTTTTGATTGGCACACCTGGACGTTT
GAAGGATTTTATGGGTCGTAGAAAAATCACACTTGAAAACCTGAAGTATC
TTGTTCTTGATGAAGCAGACAGAATGCTTGACATGGGTTTCATGCCAGAT
GTAAAAACGATTGTCTCAGATTTCAATATGCCTGAAAAAGAAGAACGGCA
CACCCTCATGTTTAGCGCAACATTCCCCGAGCAGATTCAAAAGCTTGCTA
GTGACTTTCTTAACCAATATGTTTTCATAACTATTGGTAAAATTGGTAGT
ACACATTCTGGTATTGAGCAGAAAGTTGTAGAAATAGAGGATTCCGGGAA
GCGTGATAGACTTGTTGACATTCTTGGCAATGAAGGAACCAACAGGAATC
TTGTTTTTGTGCAAACGAAACGATTGGCTGATTTCTTAGCAAGTTATTTA
TGTCAGAATGGATTCCCAACAACAAGTATCCATGGGGATCGTTACCAACA
ACAACGTGAGGAAGCTTTGCGAGAATTCAAGAGAGGTGAGCAAACAGTCC
TTATTGCCACCCAAGTTGCCGCTCGTGGTTTGGACATTGCTGATGTTAAA
CAAGTTATCAACTATGATCTTCCTGATGAAATAGAAGAATATATCCATCG
AATCGGTCGTACCGGACGGATTGGTAACAAAGGAAAAGCCATTTCCTTTT
TTACACGTGGAAAAGATGATGGGTTAGCTCGTGCACTTGTCAAAACCTTA
GCTGACgCTGAGCAAGAAGTTCCTGACTGGTTGGAAGAAGTTGCTGAGAC
TGCACTTGGTACAGGCTATGGACCAAAAGGTGGTCGATTCGCTTCCAAAG
ACACTCGTGATGGTGGCGGTGGCGGACAATTCAACGCCATGGGTAACAAT
GATGGCTGGGGTGGCGGTGAAACACCTGCAGCCGGTGGTGGTGGCGGTGG
CGCTGCTGAAGAAGATGATTGGGATTAAGAAATGCAGGTTAAAAAGCGTC
GCCATATGGATAAGGTTGTTGTCACTCACGTTTGTTTATGCATTTTGCTT
GGCAACAGAATTGGACTTGGTTGGTTCAGTAACTTGACATCAAATTTGCA
TTCTATTTTTCTTCAACTTTATCCTTGCCGCTGAGAGCACCTTAAGGGGT
GAGAATTTTAAACAGTGGTGTACAAAAGGACgttgtttaaaaaatttgtt
cataTTCAAGAAACAGTTGGTTTGTTGTTACTATAGAAActaaaaacgaa
aacaaaaactTGATGATACTATTCGTGTATTGGACTTTGATTCGATATAT
TAGAATCGGAAACTTTTTTACGATTGCATAGGAACCTTGAACTCGAATAT
CTTTCATACTTTGgtaattcttttgaaaaagagttCTATCAGAGAACCTT
CCGTAAAGATAAAATACTACGAAAGACATTCGATTTCAGATCTGAtctgt
tttttatttcagaccTGTTTTCTTATAGGTGTAAATAGTCAGGAACTTTT
GtgatttattttcaaagatttattttattcttatatAGTCTTTCTTATGC
TTATTTAGTAGCCACCTAggttttattttataattttgcaAACCCTTTTG
ATATTCTTCATAACGTCCAGCCCTATCGATTATTTCTTGAATCATTTTAC
AACGATATCCGATAGTCTTTGTCTATAGATTCGCTCTCAGTTGTTATCAG
cgtcaatagaccttatcggagtttttgatttttctaaaaaagcgatgcat
tgtgggattgtttcgagtgtattacaatagaaatctcttggAATtactcg
agggaattctattgtcatacactcgaaacaatcccacaatgcatcgcttt
tttagaaaaatcaaaaactccgataaggtctattggtgtcaagtattcat
gatatacaccattacgatgtcttccacggacccaacagcagACCCAATAT
TGACTGGTTTTACATCGcatacaaccaatcagctattgggtcttctgaca
ttgcaatggtgcatatcatgcaTTTGAATTGTGTTTATTTTCCGGTAAGG
ATTTTCTTCTATCTATGCAAGATTGTATAACGGtaatatttaaagaaatt
ataCATTGCTTGCCCTAGGTTATTAGTTCTTCATAAGAAATAACAATTAA
TTAAgcatttgaaaaatcatttttttaattccCCTTCCCCTTAAAACTTT
TCCCTCCTGCCTAACTgacctttttcaaaatccaTTCCTAATAAGTGAGA
TGTTAGAGAAAGTTTGGATCTTAAGGTTGGACAACTTTCTGACAGTAACa
gaaattatatattatatatatctATCTATGATTATATCAGTTTCTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_233:463357..473977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053552 ID=TCONS_00053552|Name=TCONS_00053552|organism=Clytia hemisphaerica|type=transcript|length=10621bp|location=Sequence derived from alignment at scaffold_233:463357..473977+ (Clytia hemisphaerica)
TTTCCATCAAACCAGCGTGGTCCCGCATTCTAAACCCTTCTTCTCTTTTC
TCCAACTCGGAGAAAGCACGTGTGGGATTTTcccaaattcaaaaaattgt
aaagactttttaccacaaatttactttgaaaagtaaaaaataagcttCTA
CTGCTAATAATACGACAACATGGCTGACGAATGGGATGAAGGAACATCCT
CAGGAAACACGGTAAGCTCCATAATTTATTGCATTGTAGGAAGCTTTTTG
TCGATCGAATAAACATGTTTTTATTGTCAGGTATATAGTTAACAAATTAC
TTTATGAAACGAAATAACAAGGATCAAAGAGTCTTTCTTTGGGGCTCTAG
TTATTATCTAATAGGGTTGGTGTATTACCAGGTATTACACCTTTCCAGTA
ATCCAGACAGAGTCAATTGAACAAGTTCAAATGAAAATCGCGATCGAACC
AATAGAATGTAATGTGTTTGATTGTATTTGCACAACCATTTCCGTTTGGT
TTGGAAACGTGAACTTCTGATGTTTAAATatttcaatacacctttcccgt
aattcaaacttctcagaaataGCCCGGGAAAATGTGAGCTCCACTGTCAG
TCAGgaacaagtgcaaattaggatacctgTTGGCAATCTCTTCTACTCAG
GAGAGTTGTATCCTAATTTTGAGATTTAGGTACATCCTTACTGCTTTGAT
CCGCGATTGGattttttcatcaagatttgcaccactgaccaaaatttcaa
gtaatttgCTTTTGCGTATGCTAGTTAGCACATTTTGAGCTAGCTAGTGG
TTTTGGGCTATAGTTTTGCATTCCGCCAAACTCAATGAAATTCAGTACAC
AATCTCATTTGCTTATTATTTACATCTTGGAAGTGGTAAGATGGGGCGGA
TGTCTCTGGTTGGTGAAAAATAcaggttttttggtttttagtatcCTAAT
TAGGATGACGTTTAGGATGTTGATTGCTACTTTGGATACTTTTTTGTATC
CAATTTAAGATACTCTCCTATGTAGGAGAGGCCGAAGGTATTctaatttg
cacttgttcttgactgactggagtgtataaaattgtttggggaGATAAAc
gaacgcgtttttgcctgcgaggggttaaggatggaaaattttcattctag
gtatggggaactcaccaaaatcaattcaaaattgaaaaacatctggtttt
atgagatgaTGTTGTGATTAATTGGATGTATAGCATATGCttagtttttc
tttcatttatatCAACCAGAATTATTACGGTTTAAAAACAACCATTCTTT
CCAtttattcttgaattagaactaccttagggaaaacaataagtgttaaa
ttcatcaaattacagctttttatgCTTGAAGGGGGGACAGAAATTTTTGG
AGGCAGGGTGGGGAAAAATGAggggggatggaaaatttttattctaggca
tggggggaaGAGACTCTGAAGGACACTATGAATCAATAATGATCGGTAAT
AATTGAAGGTGATCAGTGACCacttatcgattctatcggtgatcgaatac
tcagacgatctcaatcaaacggaattgactgattgaaattcgattgtcga
atgcaatcaaatctcaatcgaacgtcaaaattctgggtaatatttgattg
ttgttcgactggttcgattgtcgattccgttcgattgagatcgtctggta
tCAGCTTAGTGATCTGGTGATGGTGGCTCAAAATTTGATTACCCGTAATG
CTTTTGTTCTTTTGAATTTGCCGGAAAGCATCGTGAGCACTGATCACTAA
CCACTTCAAAAAGAATATGATGTCTGTACCCGGAATCAAACGCAATCAAT
GTCAagcgaatctgaaaattgcggtaatattcgattgagattcaacTGCG
TTTGACAATTGACTTTTAATTGGTCAattgcgtttgatttggtttgactg
gtgcAATCATCGATTCTgtttgattgagattgtctgggaATCTCACTCAA
CTCCAAATCATGGCATtttctttgaccatttttgatttgtttaattGTTT
CGATTACTATTATTACAATTATTATTACAATCACTTTCAATCATATTAAT
TACCTTCGATTGTGTCGGATATGTTTCCTGTAGTAAAGCAAAGGAATCTA
AAACCGAGTTTATCTCGTCCAATAAAAACGCAGGATTTACGCGCGAAAAC
CACTTTCGCTCAGAATGCTTGTTATGGGTTATTTGAGGAAACCCAGGCGA
GCACACTCAAAATCGCAGGGAAGTACTAAAGATGATTCTTATGGCTTCTT
TTTGTggttcaatatttttggttttttcaaGGTATCTATTTAATCAACTG
GTTATCGAAGAAGTCAATGGTTATCGAGGAAGTTATTGAAAGTAATTAAT
TACAAACAAAGTACTCAAACAGTTATCATGTCTTCGAAGACTAAATTAGT
TcaactatgttctgtgaaaaaatcataaccatcagtgaaATACTCTTTCA
TCTATTTAATCTTACCATCTTgtttaggggtcactcacatattgaTTCTT
CCTACAACAAAAGTCAAATTGAGGCAAAGGGGTGGGGGGTTAGAGTCGGT
GACactaagaaatttcaccagacGTGTCGTTTATTCCCTGACAATGTTAC
TTTCCAGGCAATGTCAACCAAATTGAACAGTCATTGAACCAAGAAAATCC
GGTAAAGTTCTTGATGTTCAATGTGTTCAAATTACTGCAAACCTATAGTT
GGAAAGGGTTGGATATTAATTATGTCTGTTATATTTACGCACAgagcgag
cggagtgcgactcttttgacAAACacatgcgcgtaagcaaaattgACAAT
AATATGCAGGCccaaaaaatgaaagtttttttttcacaatttttttcgtC
TAGCTGCTATTCCACTATGTTTACCCTCTAGCatgtttcaaatttgaaaa
tttcgtgaaaattagcattttttagAAGAAGTagttgcagtgtcaatctt
ttgcaaatttaaaaacccacttttccttggaaaaaattgatgttttttgt
cGAGAATGCAATGTTGGAGGAGGCTTTAGGAcgacttaaaataaaaattg
gttaacatttgggtaagcggtgtgagaaaatcaaaacaaaacagctgAAA
AGAACTGAAATTTCAGAATTAACAAaaggaaaatgcaaaaaatatgtTCT
GATGAGCTCTTACTATTCTCCCAAAAAGTTAGTGAAATTAAATCTGaaat
ataaaagaaattattacaaaactactcAACACACGAGCCAAATATATTCA
GCTTTCGGCACTTTCGTTCGTGAAACCAAACAGTTCTTTTTATCAATGAA
TGCatgcataaaaacttgaaattctttaatacttgtgaaaaatattttcc
ataatAAAACAAGGAAAATTCAATGTCTTTCATTAAACCAGCAAACAAGG
GATTTTTGTGTCTCTCCCAATTCTCCTTAAAActgtgtctttgacttttc
agcatcaTTTCTTTGACAATCAACGCTTCTTACTTCGAAAATTTGACACG
TTTACTACATGGCTCtgaatggggttctaggtccccccacttttcagtaa
ggttcaggtcccagtttAAATCTAAAGGTTCGGGTCCCTGCAAAAAGTAC
Tttcaaggttcaggtcccagaaaagaaaaatcattcggcaccaaattatt
tcaatttcaatatgttatatattttttaatatttcttaaaagaaatctaa
agaaaaatgatatatatttttaaaaacatataagAAGGTTCTGATTGAGA
AAAAATATGCACCCTTTAGTTCTTAATTGCCCTCTGAAATGTGCTGAGAG
GCCTAACTTTTTCAATAATAGAAGGTTATTGTGATCAAATCGCcatcaaa
tcaaaattaaaacattttaaagtgCTTCGCTCGCAACAATAGATGTCAAC
AaagcaaaacattcgaatcgctTCACAACaatggaatgtcttctttttgT
GGTGTGTGTACCACCCCCTCTTGCATgcagataaaaataaaacaatagaa
tatttaaaaacagaacgttaaaaccaaacaaaaaaatatttttacaattt
cttaattATTGTAAATAGCCTCCAGAACTTAAGTGCAGCCCTtcaggtcc
ccccacttttttagcccccccccctgagtttaaaaaatgagacagctcCC
ACCCACTTTTAGACCGATTTTAGATTTACACCCCCCCCCAAATTAAATAA
GGGGGGGGGCGGAGCCATATTTACAGCTTGACATTAGTTGAGAGTCGAGA
AGTTCATCAATTAGTTGGAACAACGAATCTAACGAAATTTTGGAACAAAA
ACTAGCTAACTTAAAGATTCCGGGCCTCATctaaaaagacccactagatc
aaaagttaaggggtggtacaggaaaagccctcCCCCCTAGTTTTAAACCG
CCCCTAAAaacctagtatgaatagggttaagtgaATACAACTGTTCCTTT
GCTTAAAaattattctttaaaagtagaAATTGCAttgtatatttataaaa
acGCATTGTGAAAGCTAAATAATTTTGAGGCCTTGGTGGGCTTATTTAGC
TTTTCTTCTTTCTCCAAAAAGTCGAgctcatttgaaaatttgatcctTGT
GTTAAAAGTTAAAAGTGTATTGTTTAGGATGtacatttcagaaattactg
ttAAAAGAATTAgttgtcttttttttaaattggagAAAAACTCTAAAATT
GGGTTAGTACAGAataaaatatttggaaacattatGCACATAGACCACCC
CCTCACGGTGTGAACCCCCCTTTTTgaacctaccccggtggggtggaggt
cctataaattaacccgtgttcgttcgttagttagttagttaccagctttt
ctcgagattgactcattagttttttctgatttttggcgaccataaaccct
cgaatgtgacggagcccaattttcggggaaaaaattttgggcaaatttgg
gccaaaaaacagcttaaaaacaagttttttggactttgtgaaaaattaga
tcattaattttttctgatttttaacatgaaagtagggtacagtcatagtt
aaaagatggctcaaccagatttttgcaaaaatttttttggctcaaaaatt
gcatttttatctataagaaccacttttaataagaatacatcaatgttctt
agccatattattattattattattttattagttttttttaaagatgaaaa
tgtcacggtggagcgcgatggtttgagttttctgtaaacacttattattt
ttttggctgaaaaatgaatctttatctataagaatcactatttatgagca
tagatcaatgttattagaaaagaaaaatgtcacggtagagcgcgacggtt
tgagttttctggaaaccttatttattaagctgtgcatttttctgatagtg
gttttCATAAAGAAAAGcacttaatagcttttttatttctttttcaaaaa
tatttttcaatagtgttgatagtttcttatgtgtttcattgtttcaatgt
tcactgattagtttgataaccaagtaggtccataaaagtatcgcttgtta
aTAGGGGATTAGAGTGCTTTATAGGGGGTAGGAGATTTTCCAAATCAAat
gggggatcaaataaaaatagtAAATTTGTGAACAAAGATTTGCAAATATG
GTTTTTTTTCAGGGTTTAAGTAGTGACCAATAGTTTTTACCCATAAAAAT
GGGGGGGGATCAGACGACTGCACACTATGGCccctttttttttcaggaaa
aacttCTCTGCTCTCAGGATCATTTTCCTCAAATGTGCTAATTATTTCAT
AACTCTCTTATCAGCCAAAACTCCACCTAAGGATTTAAAATCTGgagttt
tttttctcaaacatcagttgtttgtttgttttttcagaaaaatatatcaT
TTCATATTTATTCTCTTTTCAGGGATTTGGTGGTGGAAGCTCAGGTGGCT
NgtttgtttgttttttcagaaaatatatcattTCATATTTATTCTCTTTT
CAGGGATTTGGTGGTGGAAGCTCAGGTGGCTTTGGAGGTGGAAGCTCAGG
TGGTTTTGGCGGTGACTCAAATGATAATGATGACAGCGGTGGTAGTTTCA
GAGGTGGAAGAGGTAGAGGTAGAGGACGTGGCCGAGGAAGAGGAAGGGGA
AGAGGCGGATTTGGAGGATCTGATAACAATGACTCAAATGGTGGTGGCTT
CGGAGGAGGTTTTGGTGGAGAAAGTTCAGGTGGTGGCTTTGGTTCAGGCG
GTGGTGGCGGTGGTTTTGGAGACGATTCTGGTGGAGGTTTCGGTGGGAGC
TCTGGTGGTTTTGGAGGTGATGACTCAGGTGGCTTTGGTGGAGATTCTGA
TGGAGATGGTGGCCGCGGGAGAGGTAGAGGACGTGGTCGTGGAAGAGGCA
GAGGACGCGGTCGTGGTGGATTTGGAGGTGGTGATGGAGATGCAGCTGGA
GGTGGTGGTTTTGGTGGAGGAGATGACACTGGAGAGGTTGATGAAAATGG
TGAACCCATTAGACCTCTTCATGAAGTTGATCCAGACAAACCAGCACCAG
TTACATATGTACCCCCAGAACCATCAGAGGCTGAAGAAGAGATTTTCCAA
ACAATTGCTCAAGGAATCAATTTCGATCAATATGATAATATTCCTGTTGA
AATCACTGGCCCTGGAGAGATGCCAACTGCTGTCAGAAGTTTTGAAGAGG
CTGGTCTTGCACCTGGGGTCTTAGAGAACATCAAGAAAGCTAAATATACT
AAACCAACACCTGTCCAAAAATATGCCCTCCCGGCTGTGTTAGCAAAACG
TGATCTGATGGCTTGTGCCCAAACTGGATCAGGAAAAACAGTAAGTGTGt
ttaaatgttttgataaaGGTTATAATTAAAAAAGTAATCATCTCTTTCTC
GAATTCTTATTTAGGTTTCAACCAGGAagaataatttttattatttatat
ttCCTCAGTTGAATCaagagatttgtttttctttaggcTGCTTTCCTCTT
ACCTGTGTTGACTGGCATACTTGAACATAGAGATGAGTTCACCAGTCAGT
TAAGTGAGGTTCAAGCACCTATTGCTTTGGTAATTGCACCAACTCGTGAA
CTTGCAACACAGATCTTTAATGAAGCACGAAAATTCTCTCATGGAACCAG
CATTCGACCAGTTGTTGTTTATGGTGGTGTCAGTGTTGCACATCAGTTGC
GCCAGGTTGAGGCTGGTTGTCACCTTTTGATTGGCACACCTGGACGTTTG
AAGGATTTTATGGGTCGTAGAAAAGTAAGATTTTTTACTACTCTCggata
cctaatagccgggggtgctaatttaacgattaatcacactcctctaaacc
aatcagattcgaatAATTTTGCGCGGCTGACGATTACTTTAAGAAACTGC
ATGCTTTTGCAAGCTTCTTTTTTATAGCGATTTAGATCTCACTTTTTATA
CTTATGACATTAACAATGTTTTCCATTTTCAATATATCaacaaataaata
atataaatacCAGTAAATactcatttttgaaaactttcttgTATTTTAGA
TCACACTTGAAAACCTGAAGTATCTTGTTCTTGATGAAGCAGACAGAATG
CTTGACATGGGTTTCATGCCAGATGTAAAAACGATTGTCTCAGATTTCAA
TATGCCTGAAAAAGAAGAACGGCACACCCTCATGTTTAGCGCAACATTCC
CCGAGCAGATTCAAAAGCTTGCTAGTGACTTTCTTAACCAATATGTTTTC
ATAACTATTGGTAAAATTGGTAGTACACATTCTGGTATTGAGCAGAAAGT
TGTAGAAATAGAGGATTCCGGGAAGCGTGATAGACTTGTTGACATTCTTG
GCAATGAAGGAACCAACAGGAATCTTGTTTTTGTGCAAACGAAACGATTG
GCTGATTTCTTAGCAAGTTATTTATGTCAGAATGGATTCCCAACAACAAG
TATCCATGGGTTAGTATTTGTTAATCCTCTTCTCACTGCAATTTACTATC
TTCATTCTTAACTTTCAAAGCAGAAATGTGAGACAGTTCCTCATttgttt
taaaatctttaaaatcgaTCAATATTTTCTGTAAGATTTCGTCTTTTATG
TACAGTCTACTCTCCctaattcaaattttctttaatttgaattaagacat
tgccccccccccctcagctTGAAAATGCATAAAATGTCCTCTATAATTTG
AATGTTTCTCTAAACGTTTAGTCCCTCTAAGGTCGAATTCAAGAGAGGAA
GCATCTAATACTTACCTTGAAATTCCAGGGATCGTTACCAACAACAACGT
GAGGAAGCTTTGCGAGAATTCAAGAGAGGTGAGCAAACAGTCCTTATTGC
CACCCAAGTTGCCGCTCGTGGTTTGGACATTGCTGATGTTAAACAAGTTA
TCAACTATGATCTTCCTGATGAAATAGAAGAATATATCCATCGAATCGGT
CGTACCGGACGGATTGGTAACAAAGGAAAAGCCATTTCCTTTTTTACACG
TGGAAAAGATGATGGGTTAGCTCGTGCACTTGTCAAAACCTTAGCTGACG
TAAGTATTTGTTATTCTTTGTTAAGAGCTTATCTAATATTTTTTGGCGTG
AAAGAGATTTTGTCATTTAGACAAATGTGTTGTCACTACTTGACTTATAA
ATTGACCAGTAGTTTTCTAGCCGCATTTGAATCATTTCATGTCAGGAATT
TCCATTCAAttgacttgatttttttttgtaggCTGAGCAAGAAGTTCCTG
ACTGGTTGGAAGAAGTTGCTGAGACTGCACTTGGTACAGGCTATGGACCA
AAAGGTGGTCGATTCGCTTCCAAAGACACTCGTGATGTAAGTAGTAGTTT
TAGTCAGAGGCACAGAAGTACGCTGTCACCTAGAATTCAAGATTTGATCA
TTTTCCATAAAGCATAGCTAGAATAGTCTATCacatgtaaaaataatttc
tgTTGCTAATGAAACGGTTTTAAGGGAGGGTTGAAAGAGAAATTTTCCTT
ACGAGAAAACAATAACTTGAATATTTCTTTCTAAAGAAAGTTGAAGGAAC
CAGCATTTAGAATCATATACCATCCTTTTTTCAGGGTGGCGGTGGCGGAC
AATTCAACGCCATGGGTAACAATGATGGCTGGGGTGGCGGTGAAACACCT
GCAGCCGGTGGTGGTGGCGGTGGCGCTGCTGAAGAAGATGATTGGGATTA
AGAAATGCAGGTTAAAAAGCGTCGCCATATGGATAAGGTTGTTGTCACTC
ACGTTTGTTTATGCATTTTGCTTGGCAACAGAATTGGACTTGGTTGGTTC
AGTAACTTGACATCAAATTTGCATTCTATTTTTCTTCAACTTTATCCTTG
CCGCTGAGAGCACCTTAAGGGGTGAGAATTTTAAACAGTGGTGTACAAAA
GGACgttgtttaaaaaatttgttcataTTCAAGAAACAGTTGGTTTGTTG
TTACTATAGAAActaaaaacgaaaacaaaaactTGATGATACTATTCGTG
TATTGGACTTTGATTCGATATATTAGAATCGGAAACTTTTTTACGATTGC
ATAGGAACCTTGAACTCGAATATCTTTCATACTTTGgtaattcttttgaa
aaagagttCTATCAGAGAACCTTCCGTAAAGATAAAATACTACGAAAGAC
ATTCGATTTCAGATCTGAtctgttttttatttcagaccTGTTTTCTTATA
GGTGTAAATAGTCAGGAACTTTTGtgatttattttcaaagatttatttta
ttcttatatAGTCTTTCTTATGCTTATTTAGTAGCCACCTAggttttatt
ttataattttgcaAACCCTTTTGATATTCTTCATAACGTCCAGCCCTATC
GATTATTTCTTGAATCATTTTACAACGATATCCGATAGTCTTTGTCTATA
GATTCGCTCTCAGTTGTTATCAGcgtcaatagaccttatcggagtttttg
atttttctaaaaaagcgatgcattgtgggattgtttcgagtgtattacaa
tagaaatctcttggAATtactcgagggaattctattgtcatacactcgaa
acaatcccacaatgcatcgcttttttagaaaaatcaaaaactccgataag
gtctattggtgtcaagtattcatgatatacaccattacgatgtcttccac
ggacccaacagcagACCCAATATTGACTGGTTTTACATCGcatacaacca
atcagctattgggtcttctgacattgcaatggtgcatatcatgcaTTTGA
ATTGTGTTTATTTTCCGGTAAGGATTTTCTTCTATCTATGCAAGATTGTA
TAACGGtaatatttaaagaaattataCATTGCTTGCCCTAGGTTATTAGT
TCTTCATAAGAAATAACAATTAATTAAgcatttgaaaaatcattttttta
attccCCTTCCCCTTAAAACTTTTCCCTCCTGCCTAACTgacctttttca
aaatccaTTCCTAATAAGTGAGATGTTAGAGAAAGTTTGGATCTTAAGGT
TGGACAACTTTCTGACAGTAACagaaattatatattatatatatctATCT
ATGATTATATCAGTTTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033801XLOC_033801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053552-exon-scaffold_233-1491911889:463357..463567TCONS_00053552-exon-scaffold_233-1491911889:463357..463567Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:463357..463567TCONS_00053552-exon-scaffold_233-1510915933:463357..463567Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:463357..463567TCONS_00053552-exon-scaffold_233-1575043694:463357..463567Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:469329..469350TCONS_00053552-exon-scaffold_233-1491911889:469329..469350Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:469329..469350TCONS_00053552-exon-scaffold_233-1510915933:469329..469350Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:469329..469350TCONS_00053552-exon-scaffold_233-1575043694:469329..469350Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:469432..469518TCONS_00053552-exon-scaffold_233-1491911889:469432..469518Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:469432..469518TCONS_00053552-exon-scaffold_233-1510915933:469432..469518Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:469432..469518TCONS_00053552-exon-scaffold_233-1575043694:469432..469518Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:469780..470246TCONS_00053552-exon-scaffold_233-1491911889:469780..470246Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:469780..470246TCONS_00053552-exon-scaffold_233-1510915933:469780..470246Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:469780..470246TCONS_00053552-exon-scaffold_233-1575043694:469780..470246Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:470393..470680TCONS_00053552-exon-scaffold_233-1491911889:470393..470680Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:470393..470680TCONS_00053552-exon-scaffold_233-1510915933:470393..470680Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:470393..470680TCONS_00053552-exon-scaffold_233-1575043694:470393..470680Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:470956..471365TCONS_00053552-exon-scaffold_233-1491911889:470956..471365Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:470956..471365TCONS_00053552-exon-scaffold_233-1510915933:470956..471365Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:470956..471365TCONS_00053552-exon-scaffold_233-1575043694:470956..471365Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:471685..471955TCONS_00053552-exon-scaffold_233-1491911889:471685..471955Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:471685..471955TCONS_00053552-exon-scaffold_233-1510915933:471685..471955Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:471685..471955TCONS_00053552-exon-scaffold_233-1575043694:471685..471955Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:472138..472242TCONS_00053552-exon-scaffold_233-1491911889:472138..472242Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:472138..472242TCONS_00053552-exon-scaffold_233-1510915933:472138..472242Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:472138..472242TCONS_00053552-exon-scaffold_233-1575043694:472138..472242Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1491911889:472491..473977TCONS_00053552-exon-scaffold_233-1491911889:472491..473977Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1510915933:472491..473977TCONS_00053552-exon-scaffold_233-1510915933:472491..473977Clytia hemisphaericaexon
TCONS_00053552-exon-scaffold_233-1575043694:472491..473977TCONS_00053552-exon-scaffold_233-1575043694:472491..473977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:463357..473977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30194	0.240821	0.125973	0.768277	38.5112	29.6444	29.256	37.9718	0.696207	0.68313	1.29719	2.9478	0.516011	0.955928	0.13743	0.541144	1.8563	0.277887	0.943252	1.44998	0.196756	0.602923	1.68517	1.59486	60.7033	78.4103	0.120026	2.89653	3.04855	0.405126
Blast
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BLAST of TCONS_00053552 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 500.745 bits (1288), Expect = 1.122e-161
Identity = 253/457 (55.36%), Postives = 335/457 (73.30%), Query Frame = 2 
Query:  497 VTYVPPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLAPGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPVLTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIRPVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVLDEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDFL-NQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVFVQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIATQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGY--GPKGGRFASKDTR 1858
            VTY+PP P E E+ IF     GINFD+YD I VE++G  + P A+ +FEEA L   +  NI KA YTK TPVQKY++P +LA RDLMACAQTGSGKTAAFLLP+L  ++ H     S+  E+Q P  +++APTREL  QI+ EARKFS GT +R VV+YGG  + H +RQ+  GC++L  TPGRL D +G+ KI L+ +KYLVLDEADRMLDMGF P++K ++S   MP KE+R TLMFSATFPE+IQ+LA++FL + Y+F+ +G++G     ++Q V+++    KR++LV+IL N G  R +VFV+TK+ ADF+A++LCQ    TTSIHGDR Q++RE+AL +F+ G+  VL+AT VAARGLDI +V+ VIN+DLP  I+EY+HRIGRTGR GN G+AISFF    D+ LA+ LVK L DA+Q+VP WLEE+A +    G+    +G  FAS DTR
Sbjct:  244 VTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH-DAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMM-HDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTR 698
The following BLAST results are available for this feature:
BLAST of TCONS_00053552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX41.122e-16155.36Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
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