|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053576 ID=TCONS_00053576|Name=TCONS_00053576|organism=Clytia hemisphaerica|type=transcript|length=2465bpRun BLAST on NCBI protein sequence of TCONS_00053576-protein >TCONS_00053576-protein ID=TCONS_00053576-protein|Name=TCONS_00053576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp MAAVNSVEIPLRDTDEVIELDFDQLPDGDEVLSILEQENAVLHIWLTVGQRun BLAST on NCBI transcript from alignment at scaffold_233:741369..767037+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053576 ID=TCONS_00053576|Name=TCONS_00053576|organism=Clytia hemisphaerica|type=transcript|length=25669bp|location=Sequence derived from alignment at scaffold_233:741369..767037+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:741369..767037+ >TCONS_00053576 ID=TCONS_00053576|Name=TCONS_00053576|organism=Clytia hemisphaerica|type=CDS|length=29205bp|location=Sequence derived from alignment at scaffold_233:741369..767037+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053576 vs. Swiss-Prot (Human)
Match: CTR9 (RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1) HSP 1 Score: 982.245 bits (2538), Expect = 0.000e+0 Identity = 486/635 (76.54%), Postives = 558/635 (87.87%), Query Frame = 1
Query: 160 SVEIPLRDTDEVIELDFDQLPDGDEVLSILEQENAVLHIWLTVGQQYFKQNKHEDFVKIFEAACADNFASANLEYKEYAQDQMIVLDSLAAYYVQQGRKERNKDQKRELFTKATQLYTTADKIIMLDQSHLLGRAYFCLLEGDKMDQADAQFNFVLAQSTNNIPALLGKACISFQKRDYKSSLAYYKKALRTNPNCPAEVRLGMGHCFVRLGRWEKARLAFERTLELNSQCTGALVGLAILELNSKKADSIKNGVQLLSKAYTIDNQSPMVLNHLANHFFFKKDYTKVQHLALHAFHGTEVEAMQAESCYQLARSFHVQGXXXXXXXXXXXXXXXXSQNFVLPWFGLGQMYIARGDNINAAQCFEKVLKHQPNNYETMKILGSLYSTSSEPEKKETAKNHLKKVTEQFPDDVEAWIELAGILEQTDVQAALSAYGAASKILKEKVETDVPPEILNNVGALHFRLGNINEAKKFYEAALDHCKEESMQDENYYNAIAVSMYYNTARLMEAQFEFDKAEKIYKDILREHPSYVDCYLRLGCMGRDKGQIYEASDWFKMALQIDQDHPDAWTLIGNLHLAKQEWGPGQKKFERILKQPATANDTYALAALGNVWLQTLHTPSRDKTKEKRHQERAISM 2064
S+EIPLRDTDEVIELDFDQLP+GDEV+SIL+QE+ LHIW+ + +Y+KQ K E+FVK+ EAA D NL+Y+++ +DQM LD+LAAYYVQQ RKE+NKD K++L T+AT LYT ADKIIM DQ+HLLGRA FCLLEGDKMDQADAQF+FVL QS NNIPALLGKACISF K+DY+ +LAYYKKALRTNP CPAEVRLGMGHCFV+L + EKARLAF R LELNS+C GALVGLA+LELN+K+ADSIKNGVQLLS+AYTID +PMVLNHLANHFFFKKDY+KVQHLALHAFH TEVEAMQAESCYQLARSFHVQ DYDQAFQYYYQATQFAS +FVLP+FGLGQMYI RGD NA+QCFEKVLK PNNYETMKILGSLY+ S + EK++ AK HLKKVTEQ+PDDVEAWIELA ILEQTD+Q ALSAYG A++IL+EKV+ DVPPEILNNVGALHFRLGN+ EAKK++ A+LD K E+ DE+YYNAI+V+ YN ARL EA EF +AEK+YK+ILREHP+YVDCYLRLG M RDKG YEASDWFK ALQI+QDHPDAW+LIGNLHLAKQEWGPGQKKFERILKQP+T +DTY++ ALGNVWLQTLH P+RD+ KEKRHQ+RA+++
Sbjct: 5 SIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLLEAARID----GNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAI 635 The following BLAST results are available for this feature:
BLAST of TCONS_00053576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.