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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053582 ID=TCONS_00053582|Name=TCONS_00053582|organism=Clytia hemisphaerica|type=transcript|length=1289bpRun BLAST on NCBI protein sequence of TCONS_00053582-protein >TCONS_00053582-protein ID=TCONS_00053582-protein|Name=TCONS_00053582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp MGNSRGFGFVRFFNEEQFSRALRQMNGAKGLGQKVLHVNVASKGSGNKNKRun BLAST on NCBI transcript from alignment at scaffold_233:805565..818295+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053582 ID=TCONS_00053582|Name=TCONS_00053582|organism=Clytia hemisphaerica|type=transcript|length=12731bp|location=Sequence derived from alignment at scaffold_233:805565..818295+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:805565..818295+ >TCONS_00053582 ID=TCONS_00053582|Name=TCONS_00053582|organism=Clytia hemisphaerica|type=CDS|length=4347bp|location=Sequence derived from alignment at scaffold_233:805565..818295+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053582 vs. Swiss-Prot (Human)
Match: TSAP1 (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.041e-20 Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 223 IHVNIQKNTLSIMWSGLLYKLH*FLRAQPCXDFGDVNVAREVLIKVDKEPIPG-TDEKKFRLNRSEFGKGGAGVEKEFSLYVREISLEVTDEELLTFFQKKYSSVRAANIVRDVMGNSRGFGFVRFFNEEQFSRALRQMNGAKGLGQKVLHVNV 681
+ V I +N L+ + +G + +F D+ A + L K++ +P+PG T K+F+LN + +GK E+SL+V +++ +V D L FF K Y S R +V D G S+G+GFV+F +E + RAL + GA GLG K + ++V
Sbjct: 31 MSVKIIRNRLTGIPAGYCF-----------VEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDN-SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 172 The following BLAST results are available for this feature:
BLAST of TCONS_00053582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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