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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053585 ID=TCONS_00053585|Name=TCONS_00053585|organism=Clytia hemisphaerica|type=transcript|length=2398bpRun BLAST on NCBI protein sequence of TCONS_00053585-protein >TCONS_00053585-protein ID=TCONS_00053585-protein|Name=TCONS_00053585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MNYIGYDAMALGNHEFDNGPSNLVTFLQQANFSAVCSNMDVAKETKWPDPRun BLAST on NCBI transcript from alignment at scaffold_233:881669..907058+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053585 ID=TCONS_00053585|Name=TCONS_00053585|organism=Clytia hemisphaerica|type=transcript|length=25390bp|location=Sequence derived from alignment at scaffold_233:881669..907058+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:881669..907058+ >TCONS_00053585 ID=TCONS_00053585|Name=TCONS_00053585|organism=Clytia hemisphaerica|type=CDS|length=11544bp|location=Sequence derived from alignment at scaffold_233:881669..907058+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053585 vs. Swiss-Prot (Human)
Match: 5NTD (5'-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1) HSP 1 Score: 380.563 bits (976), Expect = 3.469e-121 Identity = 210/527 (39.85%), Postives = 322/527 (61.10%), Query Frame = 1
Query: 313 AANFELTVLHTNDVHAHIEQFNVYGGTCTPEDAAGNKCYGGVARRQTVIEELRKTILNTILIDGGDQFSGTTWYNIYRGNASVRFMNYIGYDAMALGNHEFDNGPSNLVT-FLQQANFSAVCSNMDVAKETKWPDPPIYVPSKILERXXXXXXXXXYTTPDTAWLSSPGPNIKFSDPVESVRAEAQKLKAQGVNILIALGHAGYAKDQEIARSVKELDLVVGGHTDTFLWNGPQPSVEKVEGPYPFMAQRDDGTECPVVQDFTYGKYLGNLKLTFDENGKLLSAQGNPIMLNASYVEDEEVLKMVDEMDDPIIKARMDPIGRSYVRLEGDRSICRLKECNLGNFFADALVDAQVKNPSTEQWAETVLAIWNGGGIRSGNIDKRFDEQINREDLSTISPFGNTADLMEIKGKYLLQAFEHGFSGIENNEGRYPQVSGFRVTYDKTKPVGSRLIRVLALCNKCRVPXXXXXXXXXXXXVVSSDYLISGGDGYSMFLNK-ESSTKGEDALEVLEKYFQKMSPVTTPDEGR 1887
A +ELT+LHTNDVH+ +EQ + C ++C GGVAR T ++++R+ N +L+D GDQ+ GT W+ +Y+G FMN + YDAMALGNHEFDNG L+ L++A F + +N+ +Y+P K+L G + +GI+GYT+ +T +LS+PG N+ F D + +++ E KLK VN +IALGH+G+ D+ IA+ V+ +D+VVGGH++TFL+ G PS E G YPF+ DDG + PVVQ + +GKYLG LK+ FDE G ++S+ GNPI+LN+S ED + +++ + +G++ V L+G CR +ECN+GN DA+++ +++ W + I NGGGIRS ID+R + I E+L+ + PFG T DL+++KG L +AFEH + G + QV G V YD ++ G R++++ LC KCRVP Y+ +K +++YKV+ ++L +GGDG+ M ++ G+ + V+ Y KM + EGR
Sbjct: 24 AGAWELTILHTNDVHSRLEQTSEDSSKCV----NASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDNYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDEMFWNHVSMCILNGGGIRS-PIDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGGDGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGR 545 The following BLAST results are available for this feature:
BLAST of TCONS_00053585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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