TCONS_00053600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053600
Unique NameTCONS_00053600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053600 ID=TCONS_00053600|Name=TCONS_00053600|organism=Clytia hemisphaerica|type=transcript|length=3269bp
aacgcggtcatatttccataatagagaaatatgaaataatgcaaatatct
cgatgctctcgaccaatcaaaacgctcaTATTTTTGGGGGTTGGCAATAA
CTTCCAATACTGTTAAACATCGAAAACTCTAAGGAAAAATATGGCAGCAT
CATAGCCCGCAATGTTGGCAGGGTTATGGCAATACTAGACGAAGCTGTCA
GTTTTCTTATCGGTAACAAAATGATGACCTAGTGATGCGAGATCATTGAC
GGAAAAGAATGGGTCAACATTTTAGAATATTCATATCTATATTGATATTG
GAGATATTGGCTAAAGACTGATTTTACATCGCAAAATTTTGGAACCATAG
CCCCGGAAAGAGGCCTAAAGCAAAAGGACACAGACGACCAGCACGAAAAC
ACGCAAAAGAACAAGGGGTGAAGAGGCTGAAGAAGTTTCAGACCCAAACC
CAACTGCTGTTGAAAATGGAATCTGAAGCTATTCATTTTCTTGGACGCAA
CAGGTGCAGTTGTTGATTGGACTTTCACAGACACTACGAAACACAACGAG
CTCAAAGGATTACTTGAAAGTTGACAGAAGCGAACCCCGGGTTTAAATCA
AATTGTCATCGACAATTGTTGCAAAGATGGAGAACTTTacagagaaattt
ttggacTAGATACCGAAGTAAAGCTTTATTTGTTTCACGCGGTACGGCGT
TCTGAGCAGAACGAAAGCCTTCACAGGCTTGTGAACCGCTGTTTCAGTGG
GAGCATAAATGCGTTCCGggcagatttttaaaaaagtacCTTAATCCACC
TAAGGTAACATACTTGTTGGTTCACATACTTTTCCTGCAGACttgaacaa
aaacagaaaatatgaTTACGATTATATGTATTTGTGTCAATGAAttgttt
tttactttattttcgtTTAGACCAAAGTTTAAATAAAATGTAcatgaaaa
aaaactaatatcGATATTATCAATATTGCATTTGGTTGGTGATGTTTTTT
TAGCCgacaaagaatttgaaaatgcAATTAACAATATCCTCGATGGCTTT
GAATGTAACCCAAAAAACCCGCGTTACAAAGGTCCGTTTTCGTTGGTAAA
AGAAGAGTATTTTGAACCGGTAAATGTCTTTATATGGTCTCCCGTCGAGC
AATACGAAATCGATACTCAATGCTTTACGCATGGTTGTATGTTTCACCCA
TGCCAAATGACGGCTTATGTTGAGACAGAGAACTATTTGAACCCACGACT
GATGTTTTGCATCAGATATAATGTTTTATTGATACAAANGGCTTATGTTG
AGACAGAGAACTATTTGAACCCACGACTGATGTTTTGCATCAGATATAAT
GTGTTATTGATACAAAGGATCTATAGATGTACTGGAGATAAACCCTGCAA
AATGTACTCTGCATCAAAAGAGTTCTTCAACCATTTATCTCAAGAAACGA
TCGAATGGTTTCCTTTTGCGATTTACCATCAATCGGGGTTTTCGTTCGCA
TGAGTCGACTTTTGTTTGAGATGATCGCTTCAGGCAATAACTTTCGCCAA
ATAACGCAAGTTTTAACAAATTCAAGAAACACTTTTCACTTTATGGAGAA
AAAGGATGCGCTTTCAAGTTTCCTTACGAAATTTCCTAGCTGTGATAAGT
TGATAACcctttaagaatttttttaccaaaagaaaCATTTCTATGAAGAC
GCCATTGAAAGCAGTTCTCCAGTAATTTTTATCTCTGCAGATCACACATT
TAAAGTTTCCAAAAGGGCAGGAGGATTCTGTTCTTTGGATAATAAGTTCA
TAAATGTAATCTGAAGCTTTTCATTGTCTTAGACGCAACATGCGCAGTTG
TTGATTGGACTTTGACATACTAtaagagaagaaaatgtcagCTCAAGGAA
ACTTTGTTTACCGTCCTATGttaattctttttgtttgtctttatccTCGT
AGTCAGCCAAGGCATACGATGTGCTACGGAATTCCAAAGTGTTAATTTTG
CCAAGCAGAAGAACACTTCGGGACTACAAAAATGCTACTCGTCCTGAAGT
GGGTTTCAATCACAAggttttgttgaaaaaatagcGGAGCTGACTAAGGA
TCTCAAAGGTCATCAAAGAAAACTAACCTTGTATTTGACAAACATACATG
TGAATTGATTGGTTTTGTTGACCTTGGGGGATTCTGACCTGAactcttct
acattcaaggaagtAGATACCATAGCAACACATTGCCTTATGTTTTATGT
GGCATTTCAACTGATCTAAAATTCAGCTTTGCATATTTTGCTACAGTAGG
TACAACAATAATTACTGTTGAAAATGTAATCTGAAGCTATTCATTATCTT
GGACGCAACAGGTGCAGTTGTTGATTGGACTTTGACAGACACTACAAAAC
ATAACGAGTTCAAAGGATTACTTAAAAGTTTACAGGAGCACGCCCCAGGT
TTAAATCAAATTATCATTGACAATTGTTGCAAAGATGGAGAACTTTACAA
GGAAATTTTTGGACCAGATACCGAAGTAAAGCTTGATTTGTTTCACGCAG
TACAGTGTAtaacaaaaatcttttgtatATGAAAGTTTTAATGAGTTTGT
GTGTCTCACTGTTCAAAATGGAAACTTCCAAACTGGAAAGTGCTCTACAC
TGGGGGTCAGTCTTTTATAACTTGCAgccttgaaaattcaaaattttcta
ttcccgaatttgaaattattgttaATGGTTTTTTGGAATTTAAGGTCCGA
CTTTATGGATGGTACTTGCCTGATGACCACATAAAATGCTACTCGTCCTG
AAGTGGGTTCCAATCAAAAGGTTGTTGAAGAAATAGCTGAGTTGACTAAG
GATCTCAAATGTTATCAAAGAAATATAACCTTGTATTTGACAAACATACA
TGTGAATTGATTGGTTTTGTTGACCTTGGGGGATTCTGACCTGAactctt
ctacattcaaggaagtAGATACCATAGCAACACATCATCTTGTGTTTTAT
GTGGCATTTCAACTGATCTAAAATTCAGCTTAGCATATTTTGCTTCAGTA
GGTACAACAGGCGCCCAGTTGATGCTACTGTTTGGTAAAGCTGTCTCCAT
ATTAGAGCTGACTTGTAAACTAAAAGTTGTTGTAACCGTATCTGATGGAG
CTTCCTTCAATAGAGCTCTCTTTTAAATGTCACAAAGAATTGTCTCGATC
AATTCAAGTTTCATCTACAGAACGATTAATATTTTTCTCCTGAACGCAGG
TCTATTTATTTCATATCTG
Run BLAST on NCBI

protein sequence of TCONS_00053600-protein

>TCONS_00053600-protein ID=TCONS_00053600-protein|Name=TCONS_00053600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MFHPCQMTAYVETENYLNPRLMFCIRYNVLLIQXAYVETENYLNPRLMFC
IRYNVLLIQRIYRCTGDKPCKMYSASKEFFNHLSQETIEWFPFAIYHQSG
FSFA
Run BLAST on NCBI

transcript from alignment at scaffold_233:1133697..1137944+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053600 ID=TCONS_00053600|Name=TCONS_00053600|organism=Clytia hemisphaerica|type=transcript|length=4248bp|location=Sequence derived from alignment at scaffold_233:1133697..1137944+ (Clytia hemisphaerica)
aacgcggtcatatttccataatagagaaatatgaaataatgcaaatatct
cgatgctctcgaccaatcaaaacgctcaTATTTTTGGGGGTTGGCAATAA
CTTCCAATACTGTTAAACATCGAAAACTCTAAGGAAAAATATGGCAGCAT
CATAGCCCGCAATGTTGGCAGGGTTATGGCAATACTAGACGAAGCTGTCA
GTTTTCTTATCGGTAACAAAATGATGACCTAGTGATGCGAGATCATTGAC
GGAAAAGAATGGGTCAACATTTTAGAATATTCATATCTATATTGATATTG
GAGATATTGGCTAAAGACTGATTTTACATCGCAAAATTTTGGAACCATAG
CCCCGGAAAGAGGCCTAAAGCAAAAGGACACAGACGACCAGCACGAAAAC
ACGCAAAAGAACAAGGGGTGAAGAGGCTGAAGAAGTTTCAGACCCAAACC
CAACTGCTGTTGAAAATGGAATCTGAAGCTATTCATTTTCTTGGACGCAA
CAGGTGCAGTTGTTGATTGGACTTTCACAGACACTACGAAACACAACGAG
CTCAAAGGATTACTTGAAAGTTGACAGAAGCGAACCCCGGGTTTAAATCA
AATTGTCATCGACAATTGTTGCAAAGATGGAGAACTTTacagagaaattt
ttggacTAGATACCGAAGTAAAGCTTTATTTGTTTCACGCGGTACGGCGT
TCTGAGCAGAACGAAAGCCTTCACAGGCTTGTGAACCGCTGTTTCAGTGG
GAGCATAAATGCGTTCCGggcagatttttaaaaaagtacCTTAATCCACC
TAAGGTAACATACTTGTTGGTTCACATACTTTTCCTGCAGACttgaacaa
aaacagaaaatatgaTTACGATTATATGTATTTGTGTCAATGAAttgttt
tttactttattttcgtTTAGACCAAAGTTTAAATAAAATGTAcatgaaaa
aaaactaatatcGATATTATCAATATTGCATTTGGTTGGTGATGTTTTTT
TAGCCgacaaagaatttgaaaatgcAATTAACAATATCCTCGATGGCTTT
GAATGTAACCCAAAAAACCCGCGTTACAAAGGTCCGTTTTCGTTGGTAAA
AGAAGAGTATTTTGAACCGGTAAATGTCTTTATATGGTCTCCCGTCGAGC
AATACGAAATCGATACTCAATGCTTTACGCATGGTTGTATGTTTCACCCA
TGCCAAATGACGGCTTATGTTGAGACAGAGAACTATTTGAACCCACGACT
GATGTTTTGCATCAGATATAATGTTTTATTGATACAAANGGCTTATGTTG
AGACAGAGAACTATTTGAACCCACGACTGATGTTTTGCATCAGATATAAT
GTGTTATTGATACAAAGGATCTATAGATGTACTGGAGATAAACCCTGCAA
AATGTACTCTGCATCAAAAGAGTTCTTCAACCATTTATCTCAAGAAACGA
TCGAATGGTTTCCTTTTGCGATTTACCATCAATCGGGGTTTTCGTTCGCA
TGAGTCGACTTTTGTTTGAGATGATCGCTTCAGGCAATAACTTTCGCCAA
ATAACGCAAGTTTTAACAAATTCAAGAAACACTTTTCACTTTATGGAGAA
AAAGGATGCGCTTTCAAGTTTCCTTACGAAATTTCCTAGCTGTGATAAGT
TGATAACcctttaagaatttttttaccaaaagaaaCATTTCTATGAAGAC
GCCATTGAAAGCAGTTCTCCAGTAATTTTTATCTCTGCAGATCACACATT
TAAAGTTTCCAAAAGGGCAGGAGGATTCTGTTCTTTGGATAATAAGTTCA
TAAATGTAATCTGAAGCTTTTCATTGTCTTAGACGCAACATGCGCAGTTG
TTGATTGGACTTTGACATACTAtaagagaagaaaatgtcagCTCAAGGAA
ACTTTGTTTACCGTCCTATGttaattctttttgtttgtctttatccTCGT
AGTCAGCCAAGGCATACGATGTGCTACGGAATTCCAAAGTGTTAATTTTG
CCAAGCAGAAGAACACTTCGGGACTACAAAAATGCTACTCGTCCTGAAGT
GGGTTTCAATCACAAggttttgttgaaaaaatagcGGAGCTGACTAAGGA
TCTCAAAGGTCATCAAAGAAAACTAACCTTGTATTTGACAAACATACATG
TGAATTGATTGGTTTTGTTGACCTTGGGGGATTCTGACCTGAactcttct
acattcaaggaagtAGATACCATAGCAACACATTGCCTTATGTTTTATGT
GGCATTTCAACTGATCTAAAATTCAGCTTTGCATATTTTGCTACAGTAGG
TACAACAATAATTACTGTTGAAAATGTAATCTGAAGCTATTCATTATCTT
GGACGCAACAGGTGCAGTTGTTGATTGGACTTTGACAGACACTACAAAAC
ATAACGAGTTCAAAGGATTACTTAAAAGTTTACAGGAGCACGCCCCAGGT
TTAAATCAAATTATCATTGACAATTGTTGCAAAGATGGAGAACTTTACAA
GGAAATTTTTGGACCAGATACCGAAGTAAAGCTTGATTTGTTTCACGCAG
TACAGTGTAtaacaaaaatcttttgtatATGAAAGTTTTAATGAGTTTGT
GTGTCTCACTGTTCAAAATGGAAACTTCCAAACTGGAAAGTGCTCTACAC
TGGGGGTCAGTCTTTTATAACTTGCAgccttgaaaattcaaaattttcta
ttcccgaatttgaaattattgttaATGGTTTTTTGGAATTTAAGGTCCGA
CTTTATGGATGGTACTTGCCTGATGACCACATAAAATGCTACTCGTCCTG
AAGTGGGTTCCAATCAANTTTAAATAGTTTTAATAACCTTAAGATACCTC
CCATAATGATATTCAACACCAGCTCACGCGACCAGGTGTTCATTCCATTT
GATTAGACGGTACTATCGACCGGTCTATCGGATGGACTCCTGGCCAGCAT
TCCCCATAATTTATTGCTTGAAAACCTTTGTAAATGTATTTAATTATTAT
TAATGCTGGTAAATATGAAGACCATGCGCAATGCGATGTACCATTCTCGG
AAAGATGGGGTAGGAACTAATTTTTCTCTGATGTACTTATctgttacttt
ttttttttaagtgaaaaattattgaaatttcgtACAAAGACGACGCATTA
GATTTGAAGAAGAATTGGCTGAAAATGATGCCAGGCATATATCAAATGAA
AAGTAGCGAGCAAAAACGGAAAGAAACCGTAATCGAAGACACAGACAGAA
TGTAAAATATAGGTACTGCCAGTTTCAGACCCAAGCCTAATTACTGTTGA
AAATGTAATCTGAAGCTATTCATTATCTTGGACGCAACAGGTGCAGTTGT
TGATTGGACTTTGACAGACACTTCAAAACATAACGAGTTCAAAGGATTAC
TTAAAAGTTTACAGGAGCACGCCCCAGGTTTAAATCAAATTATCATTGAC
AATTGTTGCAAAGATGGAGAACTTTACAAGGAAATTTTTGGACCAGATAC
CGAAGTAAAGCTTGATTTGTTTCACGCAGTACAGTGTAtaacaaaaatct
tttgtatATGAAAGTTTTAATGAGTTTGTGTGTCTCACTGTTCAAAATGG
AAACTTCCAAACTGGAAAGTGCTCTGCACTGGGGGTAAGTCTTTTATAAC
TTGCAgccttgaaaatttaaaattttctattcccgaatttgaaattattg
ttaATGGTTTTTTGGAATTGAAGGTCCGACTTTATGGATGGTACTTGCCT
GATGACCACATAAAATGCTACTCGTCCTGAAGTGGGTTTCAATCACAAGG
TTGTTGAAGAAATAGCTGAGTTGACTAAGGATCTCAAATGTTATCAAAGA
AATATAACCTTGTATTTGACAAACATACATGTGAATTGATTGGTTTTGTT
GACCTTGGGGGATTCTGACCTGAactcttctacattcaaggaagtAGATA
CCATAGCAACACATCATCTTGTGTTTTATGTGGCATTTCAACTGATCTAA
AATTCAGCTTAGCATATTTTGCTTCAGTAGGTACAACAGGCGCCCAGTTG
ATGCTACTGTTTGGTAAAGCTGTCTCCATATTAGAGCTGACTTGTAAACT
AAAAGTTGTTGTAACCGTATCTGATGGAGCTTCCTTCAATAGAGCTCTCT
TTTAAATGTCACAAAGAATTGTCTCGATCAATTCAAGTTTCATCTACAGA
ACGATTAATATTTTTCTCCTGAACGCAGGTCTATTTATTTCATATCTG

Coding sequence (CDS) from alignment at scaffold_233:1133697..1137944+

>TCONS_00053600 ID=TCONS_00053600|Name=TCONS_00053600|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_233:1133697..1137944+ (Clytia hemisphaerica)
ATGTTTCACCCATGCCAAATGACGGCTTATGTTGAGACAGAGAACTATTT
GAACCCACGACTGATGTTTTGCATCAGATATAATGTTTTATTGATACAAA
NGGCTTATGTTGAGACAGAGAACTATTTGAACCCACGACTGATGTTTTGC
ATCAGATATAATGTGTTATTGATACAAAGGATCTATAGATGTACTGGAGA
TAAACCCTGCAAAATGTACTCTGCATCAAAAGAGTTCTTCAACCATTTAT
CTCAAGAAACGATCGAATGGTTTCCTTTTGCGATTTACCATCAATCGGGG
TTTTCGTTCGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033821XLOC_033821Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053600-proteinTCONS_00053600-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053600-exon-scaffold_233-1491911889:1133697..1136513TCONS_00053600-exon-scaffold_233-1491911889:1133697..1136513Clytia hemisphaericaexon
TCONS_00053600-exon-scaffold_233-1510915933:1133697..1136513TCONS_00053600-exon-scaffold_233-1510915933:1133697..1136513Clytia hemisphaericaexon
TCONS_00053600-exon-scaffold_233-1575043694:1133697..1136513TCONS_00053600-exon-scaffold_233-1575043694:1133697..1136513Clytia hemisphaericaexon
TCONS_00053600-exon-scaffold_233-1491911889:1137493..1137944TCONS_00053600-exon-scaffold_233-1491911889:1137493..1137944Clytia hemisphaericaexon
TCONS_00053600-exon-scaffold_233-1510915933:1137493..1137944TCONS_00053600-exon-scaffold_233-1510915933:1137493..1137944Clytia hemisphaericaexon
TCONS_00053600-exon-scaffold_233-1575043694:1137493..1137944TCONS_00053600-exon-scaffold_233-1575043694:1137493..1137944Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1133697..1137944 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139128	0.214874	0.0919385	0.0385292	0.958118	0.81931	0.536615	0.851242	0.27456	0.377124	0.403038	0.148682	0.233274	0.256965	0.23901	0.268473	0.496105	0.321153	0.271144	0.16766	0.18093	0.131226	0.0797795	0.108798	0.68464	0.799887	0.148398	0.154282	0.180159	0.13431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top