TCONS_00053601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053601
Unique NameTCONS_00053601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053601 ID=TCONS_00053601|Name=TCONS_00053601|organism=Clytia hemisphaerica|type=transcript|length=3603bp
TCAACATTTAAATGATTTGTTCTAAAAAGTTGTTAAAACGGTTTGAGAAA
TTCGAAACGTTCGTCTGAACCGGAAATTTAATCGACGCAGTTCAATCATC
TAAGAAAATTAGTTGTTTTATTCGATCATTTCTACACGAGAAAGAAAAGT
TTATGTTTTTATGTTTGTTGTGATTTGGAAGAATGATGAATGATAATATC
ACTCAAAAATTATTGCTATTGCAGCCGAAGCTGATCGACCCTACAAAATG
CAATACAAGCACATCACTGTACCAGCAGATCATCAAGAACAACCAAGCAA
CGTCAGAAAGACAGTCGAGAATGTTCAACTTGGGGAACACTCACCATACT
GAAAATCCGATAGAAGCAGCAGAATTCATCCTTGAGAGAGAATACGGAGA
CAGTTCACTGTTTCGTCAAGATGAGCACGCTTGTGTTTTCATTCCACCCA
CGTTCGTTTCAAATCAATACACGAAAAAGTCGGACGTCGCCATTCTCGAT
TATGAAGTTAAAAAAGACATTGAACGCCTGGCAGAGAACTTGAAAGAACA
TTCGCCTGACCATTGGCTGACCAGAGAGATACAAGCATTGTTAGAAACGC
AAAACGATGCCGAATGTATTGATAAAAGGACATTTGACCAATGGGCTTTG
AATATTCAAGTGATGTATCTGGTCGTCAGAGAGCTGAAAACTGATCACGT
GGTTTTACCGCCGGCGACAACTACAGAGCTAGTCGTTTTCGTCCAAGCCT
GTACAGAAAAGCTTATCCAGAACACGCCCATCGAAAAGTTTCTAAGAGAG
AGCCATACGAAAAAGACCTTCCGAAAGTTAATAAAACGAAAAATTGACAA
CGCGCCTTGTGAAGATTCGAACCTTCGTTGGCTTTTTGGATTGGAGTTGG
TAAATCTTGGAGAAAGACTTGAACATTGGTTCTACGATCAGCTTTTATCT
TTAAAGGGCGATGGTATTCTTAAGGACACGGTTGTACTCTCGTCCCTCGA
CTTCTTAACCAATATGGAAAGTAAAAATCACAAAGAGACAGactttctca
ttttttcatGGCCGAAGAAACTCGTCATTTCGGTTGAAATGAAAAGATCA
CTTGCAGACGAGAAAGTGTTCAAACAGTTAGATTCGAACCATCAGATATT
CGAAGAGAGTCTTGGTGACCTGTTGAGATCTGGCTGGACATTCTTTCCAA
CAGTCTGTGTTGAAATAGATACTCTCTCAATCAAAAGCGATCATTTTATC
ACAATGGATACCGAGATTAAACCATGGTTGAAGAATATCTTCGATAGCTT
CTCATCCTGCCAGACCGATATAAAACCAGCGCCTTTGGATGAAGTCAAAG
ATCTCTTAAAGATCCTGATATTCGCAATCCACGTTTCAAAGAAGGATTTG
GCTGCACCCATTACCACATCATCGTGGGTTAAATACACAAGCAACGCCAT
CGAAAACGTTTCGACTAGCCACAATATCCTGTTCTACTCGAATCAACAGT
TAGCTATAATGAACAACGACGATCCACGCTACAACAAAGTGGTGATCCGC
GGCCCATTTGGTGTGGGCAAGAGCCTCTTGCTCCAGCAGAAAGCCCTACA
ATTacatgaaaaaacaaaatatcgtGGCAAGTTACTGTATCTGGTTTGTC
GTCAAGGATACGTACCCCTGAAGCCCATGCTTCTCCAGCGTTTAAAGGTC
GAACTTCAAGACAAATATGGAATATTCGTAGGAGTTCTTACACCCAAATT
TTCGgcaAAGGCTTGTCAGGATCGCCAGGCTATCTTGGATAAAATCAAAG
ACCGCGACATCAAAGCAGTATTTATAGACGAATGCGATTTGTTGTCAAGT
CTCTCATCTTGGTTAGATAAAGTGACGGTAATCGTTGAATATCTGTGGAT
AGCCCCTTCTACAgattctttgaaagattttcacaAACAAGATAATTTGA
CTGGCTTCCAGGTCCTAGATCTGTCGCAGAACTTTAGAAACAGTCGAGAA
ATCGTCAAATCAGCCAAATCAATCGCCGAATCAAGCGAATATCGATATAA
CCAAGGCATCATTATGCCACCTGAGAACTTCCCTAGCGGCTGCACACCGA
TCTTTGCGGAAACCTTCGAAGAGGGTTTAAGGGAGGCACGAAAACGAACG
AGTGAAGGAATCCTGGTGATAGATGATAAACCAGACGAAGCAAATTCCAA
CATTCTAGACCAGTTGAACGAAACGTGGAAAGGATATCACGAGTGGAGAT
ACGATTTTAAAAACGGAGGAAATCCATACAAGTTTCTCCAAGAAGGCAAC
GTACTGATTGTTTCTGAATTCACGTCTTTTGGCTTCGAGTGGCCGACAGT
GATTGTGGTTGAAACTATAAGAGCAGGAGGCAGTATAGCGTTACACGATT
GTAACTACGCATTGAGATGTACCACGAATCTCATCATTGTTAAGAGAACT
TACGATGGCGACGAGGACAGTGATTGAAAACAAATTCAACGAACTggaat
aatttaaaaataaaatctacacAATAATATTTTCACAGTACCATTTTGTT
GTAAATCGCCATTATGTTATAgatacagttgatgctctttAATTCGAAGC
TCTACTactcgatacgctccattattcgataatattgaaagtcaccgtca
acaaggaACTCTTATTAACTACGCTCTTCTATTCGATTCGTTGAAAATCC
CCTTGAAGATCAGATTAGAGAGTATCATCTATACATTTTAATGGGGATGA
TATCAATATCGATTTTTTTATGATAAGTTAAGTATGCtgtatattttgaa
attagtcGTGTGTAAAGAAGGCAATGTAattattttaagtatttttgaga
aaatccacaggaatttaaattaaaaaagccAACATCCTCAAAAAAATCAG
TCCACTTTTTGACAAGAAGTTATCAGTAGTTGGGTACACAACTTACTTCG
ATTTTCTGCGAAAGAGCATCATTCTGTTGCATCAAGGCTTTGTTATTGTT
CAGTGATTCCTCATACAACAGTTGCACGCGATCATGCTCGAAAGCTTTCA
TTTTGAAGTCGTTGTGGACGTCTGATACTTTACTGTCAGAACTGATTTGC
AACTGGCGAAATCTAAAAAATAGTTAAACGGTTCACCGTCaataatttgg
tcaaattttgagAATTAGAAACTCCATTTTTGGCAAAGAATGAAAAGTAT
GAAGTTATCTTGAATTAAGATGCCTAAGCAAATTAGTCCACGAGAACGTA
TTTGCAACTGTAGCAGTCAAATCCCATTTGATGTCATGGTGGTATGAAAG
GAGGGGTCAGATCTCCTTTCCGAGCACAAAATGTAATATAAAAATATGTT
ATTGAAAGTTTAAATAAATCACTTACTCTCCTAGAAGTTCATtgtatttg
atttgattgttcttTTCGTTGTTGAGGAGACGTTCTTGCTCCAAAAGAGC
AGTGTTTCTTGCTTCAACTAATCCCCTGTTTTCTCGTTCGTACATCGCCT
TCATGTTTTCCTTGATTCGATCTAGTTCTGTATTCGTTTTATTCGATAGT
TCGTCTATTTCTCTTTTCATTCGTTCTTCGTACTCTTGCTTATAGCGTTC
CCT
Run BLAST on NCBI

protein sequence of TCONS_00053601-protein

>TCONS_00053601-protein ID=TCONS_00053601-protein|Name=TCONS_00053601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp
MMNDNITQKLLLLQPKLIDPTKCNTSTSLYQQIIKNNQATSERQSRMFNL
GNTHHTENPIEAAEFILEREYGDSSLFRQDEHACVFIPPTFVSNQYTKKS
DVAILDYEVKKDIERLAENLKEHSPDHWLTREIQALLETQNDAECIDKRT
FDQWALNIQVMYLVVRELKTDHVVLPPATTTELVVFVQACTEKLIQNTPI
EKFLRESHTKKTFRKLIKRKIDNAPCEDSNLRWLFGLELVNLGERLEHWF
YDQLLSLKGDGILKDTVVLSSLDFLTNMESKNHKETDFLIFSWPKKLVIS
VEMKRSLADEKVFKQLDSNHQIFEESLGDLLRSGWTFFPTVCVEIDTLSI
KSDHFITMDTEIKPWLKNIFDSFSSCQTDIKPAPLDEVKDLLKILIFAIH
VSKKDLAAPITTSSWVKYTSNAIENVSTSHNILFYSNQQLAIMNNDDPRY
NKVVIRGPFGVGKSLLLQQKALQLHEKTKYRGKLLYLVCRQGYVPLKPML
LQRLKVELQDKYGIFVGVLTPKFSAKACQDRQAILDKIKDRDIKAVFIDE
CDLLSSLSSWLDKVTVIVEYLWIAPSTDSLKDFHKQDNLTGFQVLDLSQN
FRNSREIVKSAKSIAESSEYRYNQGIIMPPENFPSGCTPIFAETFEEGLR
EARKRTSEGILVIDDKPDEANSNILDQLNETWKGYHEWRYDFKNGGNPYK
FLQEGNVLIVSEFTSFGFEWPTVIVVETIRAGGSIALHDCNYALRCTTNL
IIVKRTYDGDEDSD
Run BLAST on NCBI

transcript from alignment at scaffold_233:1183248..1187052+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053601 ID=TCONS_00053601|Name=TCONS_00053601|organism=Clytia hemisphaerica|type=transcript|length=3805bp|location=Sequence derived from alignment at scaffold_233:1183248..1187052+ (Clytia hemisphaerica)
TCAACATTTAAATGATTTGTTCTAAAAAGTTGTTAAAACGGTTTGAGAAA TTCGAAACGTTCGTCTGAACCGGAAATTTAATCGACGCAGTTCAATCATC TAAGAAAATTAGTTGTTTTATTCGATCATTTCTACACGAGAAAGAAAAGT TTATGTTTTTATGTTTGTTGTGATTTGGAAGAATGATGAATGATAATATC ACTCAAAAATTATTGCTATTGCAGCCGAAGCTGATCGACCCTACAAAATG CAATACAAGCACATCACTGTACCAGCAGATCATCAAGAACAACCAAGCAA CGTCAGAAAGACAGTCGAGAATGTTCAACTTGGGGAACACTCACCATACT GAAAATCCGATAGAAGCAGCAGAATTCATCCTTGAGAGAGAATACGGAGA CAGTTCACTGTTTCGTCAAGATGAGCACGCTTGTGTTTTCATTCCACCCA CGTTCGTTTCAAATCAATACACGAAAAAGTCGGACGTCGCCATTCTCGAT TATGAAGTTAAAAAAGACATTGAACGCCTGGCAGAGAACTTGAAAGAACA TTCGCCTGACCATTGGCTGACCAGAGAGATACAAGCATTGTTAGAAACGC AAAACGATGCCGAATGTATTGATAAAAGGACATTTGACCAATGGGCTTTG AATATTCAAGTGATGTATCTGGTCGTCAGAGAGCTGAAAACTGATCACGT GGTTTTACCGCCGGCGACAACTACAGAGCTAGTCGTTTTCGTCCAAGCCT GTACAGAAAAGCTTATCCAGAACACGCCCATCGAAAAGTTTCTAAGAGAG AGCCATACGAAAAAGACCTTCCGAAAGTTAATAAAACGAAAAATTGACAA CGCGCCTTGTGAAGATTCGAACCTTCGTTGGCTTTTTGGATTGGAGTTGG TAAATCTTGGAGAAAGACTTGAACATTGGTTCTACGATCAGCTTTTATCT TTAAAGGGCGATGGTATTCTTAAGGACACGGTTGTACTCTCGTCCCTCGA CTTCTTAACCAATATGGAAAGTAAAAATCACAAAGAGACAGactttctca ttttttcatGGCCGAAGAAACTCGTCATTTCGGTTGAAATGAAAAGATCA CTTGCAGACGAGAAAGTGTTCAAACAGTTAGATTCGAACCATCAGATATT CGAAGAGAGTCTTGGTGACCTGTTGAGATCTGGCTGGACATTCTTTCCAA CAGTCTGTGTTGAAATAGATACTCTCTCAATCAAAAGCGATCATTTTATC ACAATGGATACCGAGATTAAACCATGGTTGAAGAATATCTTCGATAGCTT CTCATCCTGCCAGACCGATATAAAACCAGCGCCTTTGGATGAAGTCAAAG ATCTCTTAAAGATCCTGATATTCGCAATCCACGTTTCAAAGAAGGATTTG GCTGCACCCATTACCACATCATCGTGGGTTAAATACACAAGCAACGCCAT CGAAAACGTTTCGACTAGCCACAATATCCTGTTCTACTCGAATCAACAGT TAGCTATAATGAACAACGACGATCCACGCTACAACAAAGTGGTGATCCGC GGCCCATTTGGTGTGGGCAAGAGCCTCTTGCTCCAGCAGAAAGCCCTACA ATTacatgaaaaaacaaaatatcgtGGCAAGTTACTGTATCTGGTTTGTC GTCAAGGATACGTACCCCTGAAGCCCATGCTTCTCCAGCGTTTAAAGGTC GAACTTCAAGACAAATATGGAATATTCGTAGGAGTTCTTACACCCAAATT TTCGGTAAGTGCGACAATAAATTCGCCTcaacaaaacaattttaaacCAG ACTAGAGTGTTCTAGAGTTTTGCAACCTTCGACTAATGGCTTTGACTTTG ACTAAGGTATTTTTATTCTTAGAGGTATTTTTAAAAAGTGGCAATAAAAT ACCTTCTGATTCCCTCAGACTTGATAACTAACttaattattgtttttatt tttaaggcaAAGGCTTGTCAGGATCGCCAGGCTATCTTGGATAAAATCAA AGACCGCGACATCAAAGCAGTATTTATAGACGAATGCGATTTGTTGTCAA GTCTCTCATCTTGGTTAGATAAAGTGACGGTAATCGTTGAATATCTGTGG ATAGCCCCTTCTACAgattctttgaaagattttcacaAACAAGATAATTT GACTGGCTTCCAGGTCCTAGATCTGTCGCAGAACTTTAGAAACAGTCGAG AAATCGTCAAATCAGCCAAATCAATCGCCGAATCAAGCGAATATCGATAT AACCAAGGCATCATTATGCCACCTGAGAACTTCCCTAGCGGCTGCACACC GATCTTTGCGGAAACCTTCGAAGAGGGTTTAAGGGAGGCACGAAAACGAA CGAGTGAAGGAATCCTGGTGATAGATGATAAACCAGACGAAGCAAATTCC AACATTCTAGACCAGTTGAACGAAACGTGGAAAGGATATCACGAGTGGAG ATACGATTTTAAAAACGGAGGAAATCCATACAAGTTTCTCCAAGAAGGCA ACGTACTGATTGTTTCTGAATTCACGTCTTTTGGCTTCGAGTGGCCGACA GTGATTGTGGTTGAAACTATAAGAGCAGGAGGCAGTATAGCGTTACACGA TTGTAACTACGCATTGAGATGTACCACGAATCTCATCATTGTTAAGAGAA CTTACGATGGCGACGAGGACAGTGATTGAAAACAAATTCAACGAACTgga ataatttaaaaataaaatctacacAATAATATTTTCACAGTACCATTTTG TTGTAAATCGCCATTATGTTATAgatacagttgatgctctttAATTCGAA GCTCTACTactcgatacgctccattattcgataatattgaaagtcaccgt caacaaggaACTCTTATTAACTACGCTCTTCTATTCGATTCGTTGAAAAT CCCCTTGAAGATCAGATTAGAGAGTATCATCTATACATTTTAATGGGGAT GATATCAATATCGATTTTTTTATGATAAGTTAAGTATGCtgtatattttg aaattagtcGTGTGTAAAGAAGGCAATGTAattattttaagtatttttga gaaaatccacaggaatttaaattaaaaaagccAACATCCTCAAAAAAATC AGTCCACTTTTTGACAAGAAGTTATCAGTAGTTGGGTACACAACTTACTT CGATTTTCTGCGAAAGAGCATCATTCTGTTGCATCAAGGCTTTGTTATTG TTCAGTGATTCCTCATACAACAGTTGCACGCGATCATGCTCGAAAGCTTT CATTTTGAAGTCGTTGTGGACGTCTGATACTTTACTGTCAGAACTGATTT GCAACTGGCGAAATCTAAAAAATAGTTAAACGGTTCACCGTCaataattt ggtcaaattttgagAATTAGAAACTCCATTTTTGGCAAAGAATGAAAAGT ATGAAGTTATCTTGAATTAAGATGCCTAAGCAAATTAGTCCACGAGAACG TATTTGCAACTGTAGCAGTCAAATCCCATTTGATGTCATGGTGGTATGAA AGGAGGGGTCAGATCTCCTTTCCGAGCACAAAATGTAATATAAAAATATG TTATTGAAAGTTTAAATAAATCACTTACTCTCCTAGAAGTTCATtgtatt tgatttgattgttcttTTCGTTGTTGAGGAGACGTTCTTGCTCCAAAAGA GCAGTGTTTCTTGCTTCAACTAATCCCCTGTTTTCTCGTTCGTACATCGC CTTCATGTTTTCCTTGATTCGATCTAGTTCTGTATTCGTTTTATTCGATA GTTCGTCTATTTCTCTTTTCATTCGTTCTTCGTACTCTTGCTTATAGCGT TCCCT

Coding sequence (CDS) from alignment at scaffold_233:1183248..1187052+

>TCONS_00053601 ID=TCONS_00053601|Name=TCONS_00053601|organism=Clytia hemisphaerica|type=CDS|length=4590bp|location=Sequence derived from alignment at scaffold_233:1183248..1187052+ (Clytia hemisphaerica)
ATGATGAATGATAATATCACTCAAAAATTATTGCTATTGCAGCCGAAGCT
GATCGACCCTACAAAATGCAATACAAGCACATCACTGTACCAGCAGATCA
TCAAGAACAACCAAGCAACGTCAGAAAGACAGTCGAGAATGTTCAACTTG
GGGAACACTCACCATACTGAAAATCCGATAGAAGCAGCAGAATTCATCCT
TGAGAGAGAATACGGAGACAGTTCACTGTTTCGTCAAGATGAGCACGCTT
GTGTTTTCATTCCACCCACGTTCGTTTCAAATCAATACACGAAAAAGTCG
GACGTCGCCATTCTCGATTATGAAGTTAAAAAAGACATTGAACGCCTGGC
AGAGAACTTGAAAGAACATTCGCCTGACCATTGGCTGACCAGAGAGATAC
AAGCATTGTTAGAAACGCAAAACGATGCCGAATGTATTGATAAAAGGACA
TTTGACCAATGGGCTTTGAATATTCAAGTGATGTATCTGGTCGTCAGAGA
GCTGAAAACTGATCACGTGGTTTTACCGCCGGCGACAACTACAGAGCTAG
TCGTTTTCGTCCAAGCCTGTACAGAAAAGCTTATCCAGAACACGCCCATC
GAAAAGTTTCTAAGAGAGAGCCATACGAAAAAGACCTTCCGAAAGTTAAT
AAAACGAAAAATTGACAACGCGCCTTGTGAAGATTCGAACCTTCGTTGGC
TTTTTGGATTGGAGTTGGTAAATCTTGGAGAAAGACTTGAACATTGGTTC
TACGATCAGCTTTTATCTTTAAAGGGCGATGGTATTCTTAAGGACACGGT
TGTACTCTCGTCCCTCGACTTCTTAACCAATATGGAAAGTAAAAATCACA
AAGAGACAGactttctcattttttcatGGCCGAAGAAACTCGTCATTTCG
GTTGAAATGAAAAGATCACTTGCAGACGAGAAAGTGTTCAAACAGTTAGA
TTCGAACCATCAGATATTCGAAGAGAGTCTTGGTGACCTGTTGAGATCTG
GCTGGACATTCTTTCCAACAGTCTGTGTTGAAATAGATACTCTCTCAATC
AAAAGCGATCATTTTATCACAATGGATACCGAGATTAAACCATGGTTGAA
GAATATCTTCGATAGCTTCTCATCCTGCCAGACCGATATAAAACCAGCGC
CTTTGGATGAAGTCAAAGATCTCTTAAAGATCCTGATATTCGCAATCCAC
GTTTCAAAGAAGGATTTGGCTGCACCCATTACCACATCATCGTGGGTTAA
ATACACAAGCAACGCCATCGAAAACGTTTCGACTAGCCACAATATCCTGT
TCTACTCGAATCAACAGTTAGCTATAATGAACAACGACGATCCACGCTAC
AACAAAGTGGTGATCCGCGGCCCATTTGGTGTGGGCAAGAGCCTCTTGCT
CCAGCAGAAAGCCCTACAATTacatgaaaaaacaaaatatcgtGGCAAGT
TACTGTATCTGGTTTGTCGTCAAGGATACGTACCCCTGAAGCCCATGCTT
CTCCAGCGTTTAAAGGTCGAACTTCAAGACAAATATGGAATATTCGTAGG
AGTTCTTACACCCAAATTTTCGgcaAAGGCTTGTCAGGATCGCCAGGCTA
TCTTGGATAAAATCAAAGACCGCGACATCAAAGCAGTATTTATAGACGAA
TGCGATTTGTTGTCAAGTCTCTCATCTTGGTTAGATAAAGTGACGGTAAT
CGTTGAATATCTGTGGATAGCCCCTTCTACAgattctttgaaagattttc
acaAACAAGATAATTTGACTGGCTTCCAGGTCCTAGATCTGTCGCAGAAC
TTTAGAAACAGTCGAGAAATCGTCAAATCAGCCAAATCAATCGCCGAATC
AAGCGAATATCGATATAACCAAGGCATCATTATGCCACCTGAGAACTTCC
CTAGCGGCTGCACACCGATCTTTGCGGAAACCTTCGAAGAGGGTTTAAGG
GAGGCACGAAAACGAACGAGTGAAGGAATCCTGGTGATAGATGATAAACC
AGACGAAGCAAATTCCAACATTCTAGACCAGTTGAACGAAACGTGGAAAG
GATATCACGAGTGGAGATACGATTTTAAAAACGGAGGAAATCCATACAAG
TTTCTCCAAGAAGGCAACGTACTGATTGTTTCTGAATTCACGTCTTTTGG
CTTCGAGTGGCCGACAGTGATTGTGGTTGAAACTATAAGAGCAGGAGGCA
GTATAGCGTTACACGATTGTAACTACGCATTGAGATGTACCACGAATCTC
ATCATTGTTAAGAGAACTTACGATGGCGACGAGGACAGTGATTGAATGAT
GAATGATAATATCACTCAAAAATTATTGCTATTGCAGCCGAAGCTGATCG
ACCCTACAAAATGCAATACAAGCACATCACTGTACCAGCAGATCATCAAG
AACAACCAAGCAACGTCAGAAAGACAGTCGAGAATGTTCAACTTGGGGAA
CACTCACCATACTGAAAATCCGATAGAAGCAGCAGAATTCATCCTTGAGA
GAGAATACGGAGACAGTTCACTGTTTCGTCAAGATGAGCACGCTTGTGTT
TTCATTCCACCCACGTTCGTTTCAAATCAATACACGAAAAAGTCGGACGT
CGCCATTCTCGATTATGAAGTTAAAAAAGACATTGAACGCCTGGCAGAGA
ACTTGAAAGAACATTCGCCTGACCATTGGCTGACCAGAGAGATACAAGCA
TTGTTAGAAACGCAAAACGATGCCGAATGTATTGATAAAAGGACATTTGA
CCAATGGGCTTTGAATATTCAAGTGATGTATCTGGTCGTCAGAGAGCTGA
AAACTGATCACGTGGTTTTACCGCCGGCGACAACTACAGAGCTAGTCGTT
TTCGTCCAAGCCTGTACAGAAAAGCTTATCCAGAACACGCCCATCGAAAA
GTTTCTAAGAGAGAGCCATACGAAAAAGACCTTCCGAAAGTTAATAAAAC
GAAAAATTGACAACGCGCCTTGTGAAGATTCGAACCTTCGTTGGCTTTTT
GGATTGGAGTTGGTAAATCTTGGAGAAAGACTTGAACATTGGTTCTACGA
TCAGCTTTTATCTTTAAAGGGCGATGGTATTCTTAAGGACACGGTTGTAC
TCTCGTCCCTCGACTTCTTAACCAATATGGAAAGTAAAAATCACAAAGAG
ACAGactttctcattttttcatGGCCGAAGAAACTCGTCATTTCGGTTGA
AATGAAAAGATCACTTGCAGACGAGAAAGTGTTCAAACAGTTAGATTCGA
ACCATCAGATATTCGAAGAGAGTCTTGGTGACCTGTTGAGATCTGGCTGG
ACATTCTTTCCAACAGTCTGTGTTGAAATAGATACTCTCTCAATCAAAAG
CGATCATTTTATCACAATGGATACCGAGATTAAACCATGGTTGAAGAATA
TCTTCGATAGCTTCTCATCCTGCCAGACCGATATAAAACCAGCGCCTTTG
GATGAAGTCAAAGATCTCTTAAAGATCCTGATATTCGCAATCCACGTTTC
AAAGAAGGATTTGGCTGCACCCATTACCACATCATCGTGGGTTAAATACA
CAAGCAACGCCATCGAAAACGTTTCGACTAGCCACAATATCCTGTTCTAC
TCGAATCAACAGTTAGCTATAATGAACAACGACGATCCACGCTACAACAA
AGTGGTGATCCGCGGCCCATTTGGTGTGGGCAAGAGCCTCTTGCTCCAGC
AGAAAGCCCTACAATTacatgaaaaaacaaaatatcgtGGCAAGTTACTG
TATCTGGTTTGTCGTCAAGGATACGTACCCCTGAAGCCCATGCTTCTCCA
GCGTTTAAAGGTCGAACTTCAAGACAAATATGGAATATTCGTAGGAGTTC
TTACACCCAAATTTTCGgcaAAGGCTTGTCAGGATCGCCAGGCTATCTTG
GATAAAATCAAAGACCGCGACATCAAAGCAGTATTTATAGACGAATGCGA
TTTGTTGTCAAGTCTCTCATCTTGGTTAGATAAAGTGACGGTAATCGTTG
AATATCTGTGGATAGCCCCTTCTACAgattctttgaaagattttcacaAA
CAAGATAATTTGACTGGCTTCCAGGTCCTAGATCTGTCGCAGAACTTTAG
AAACAGTCGAGAAATCGTCAAATCAGCCAAATCAATCGCCGAATCAAGCG
AATATCGATATAACCAAGGCATCATTATGCCACCTGAGAACTTCCCTAGC
GGCTGCACACCGATCTTTGCGGAAACCTTCGAAGAGGGTTTAAGGGAGGC
ACGAAAACGAACGAGTGAAGGAATCCTGGTGATAGATGATAAACCAGACG
AAGCAAATTCCAACATTCTAGACCAGTTGAACGAAACGTGGAAAGGATAT
CACGAGTGGAGATACGATTTTAAAAACGGAGGAAATCCATACAAGTTTCT
CCAAGAAGGCAACGTACTGATTGTTTCTGAATTCACGTCTTTTGGCTTCG
AGTGGCCGACAGTGATTGTGGTTGAAACTATAAGAGCAGGAGGCAGTATA
GCGTTACACGATTGTAACTACGCATTGAGATGTACCACGAATCTCATCAT
TGTTAAGAGAACTTACGATGGCGACGAGGACAGTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033822XLOC_033822Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053601-proteinTCONS_00053601-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053601-exon-scaffold_233-1491911889:1183248..1185001TCONS_00053601-exon-scaffold_233-1491911889:1183248..1185001Clytia hemisphaericaexon
TCONS_00053601-exon-scaffold_233-1510915933:1183248..1185001TCONS_00053601-exon-scaffold_233-1510915933:1183248..1185001Clytia hemisphaericaexon
TCONS_00053601-exon-scaffold_233-1575043694:1183248..1185001TCONS_00053601-exon-scaffold_233-1575043694:1183248..1185001Clytia hemisphaericaexon
TCONS_00053601-exon-scaffold_233-1491911889:1185204..1187052TCONS_00053601-exon-scaffold_233-1491911889:1185204..1187052Clytia hemisphaericaexon
TCONS_00053601-exon-scaffold_233-1510915933:1185204..1187052TCONS_00053601-exon-scaffold_233-1510915933:1185204..1187052Clytia hemisphaericaexon
TCONS_00053601-exon-scaffold_233-1575043694:1185204..1187052TCONS_00053601-exon-scaffold_233-1575043694:1185204..1187052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1183248..1187052 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.269143 0.141387 1.30842 1.46471 4.8916 3.6845 1.83443 1.96703 1.18764 1.57208 1.17171 1.33362 2.65821 2.47118 0.884458 1.14295 3.14548 6.81012 2.53575 3.46843 0.340595 0.285109 0.20756 0.388226 0.60478 0.532145 0.539266 0.0819132 0.531813 0.553328
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top