TCONS_00053606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053606
Unique NameTCONS_00053606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053606 ID=TCONS_00053606|Name=TCONS_00053606|organism=Clytia hemisphaerica|type=transcript|length=314bp
AAgtaatataaaatcaaaatgacaaatgaaaaagtaaCAGCAGTACCAAT
TGAAGACGAGAAAGTCAAAGCATGGGTTGAACACATGTACAGTATAGGCG
AGGACGAGTTGCGAATGATCAAACCTTACAATCAAGTCCTTCGTAAAGGT
TATATGGAGATACACGATGATATACAGAATTTCGAAACAAGAGAGGATGA
CGTATTCATATGCACTGCTCCCAAATCAGGTACGCGTTGGATGCAAGAAG
TCTTGTGGTGTTTACGGAATGATTGTGACTTCGAGAAAGCCAACAAGGTT
TCCTTACAAGTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_233:1233822..1234324+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053606 ID=TCONS_00053606|Name=TCONS_00053606|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at scaffold_233:1233822..1234324+ (Clytia hemisphaerica)
AAgtaatataaaatcaaaatgacaaatgaaaaagtaaCAGCAGTACCAAT
TGAAGACGAGAAAGTCAAAGCATGGGTTGAACACATGTACAGTATAGGCG
AGGACGAGTTGCGAATGATCAAACCTTACAATCAAGTCCTTCGTAAAGGT
TATATGGAGATACACGATGATATACAGAATTTCGAAACAAGAGAGGATGA
CGTATTCATATGCACTGCTCCCAAATCAGGTGAATTCTTAATACTACTTC
AAAGTGGAAAGGGTTATAATTTCTAACGAAGACGTATACTGTATTATaag
gaaaaattttcatttgcttcctATAATAAATGATATGATTACTCATATCA
GATAGTTTTCAAATATCATGCTGACAGTATCATAAAGATGTATATATAAG
TTTGTGTTATAATTTCAGGTACGCGTTGGATGCAAGAAGTCTTGTGGTGT
TTACGGAATGATTGTGACTTCGAGAAAGCCAACAAGGTTTCCTTACAAGT
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033823XLOC_033823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053606-exon-scaffold_233-1491911889:1233822..1234050TCONS_00053606-exon-scaffold_233-1491911889:1233822..1234050Clytia hemisphaericaexon
TCONS_00053606-exon-scaffold_233-1510915933:1233822..1234050TCONS_00053606-exon-scaffold_233-1510915933:1233822..1234050Clytia hemisphaericaexon
TCONS_00053606-exon-scaffold_233-1575043694:1233822..1234050TCONS_00053606-exon-scaffold_233-1575043694:1233822..1234050Clytia hemisphaericaexon
TCONS_00053606-exon-scaffold_233-1491911889:1234240..1234324TCONS_00053606-exon-scaffold_233-1491911889:1234240..1234324Clytia hemisphaericaexon
TCONS_00053606-exon-scaffold_233-1510915933:1234240..1234324TCONS_00053606-exon-scaffold_233-1510915933:1234240..1234324Clytia hemisphaericaexon
TCONS_00053606-exon-scaffold_233-1575043694:1234240..1234324TCONS_00053606-exon-scaffold_233-1575043694:1234240..1234324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1233822..1234324 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.242222	0	0.911068	0	0	0	0.0383765	0	0	0	0	0	0	0	2.38194	2.17469	0.441634	0	10.6933	12.8084	16.1664	20.3831	0	0.666404	348.273	422.412	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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