TCONS_00053608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053608
Unique NameTCONS_00053608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053608 ID=TCONS_00053608|Name=TCONS_00053608|organism=Clytia hemisphaerica|type=transcript|length=1830bp
atttaGATAAAGATCGATGAAAAATGTTTCTGTTACAACTAATTTGCATT
TATTATATGGTGGTATCAACATCAACAAAAGAGTTTGAGTTTTCAGCTGA
TGAGAAACGTGTTCAGAGAGGTAGAGAAACTTACGAACagtttgataaag
attttcgattcaaaaattcaaaatgttggCGTGCAGCATTGGATCATATA
GATGAAAGTTGTAGACAAATGAGTGATATTCATCAAAGTTATTTAGCTCT
TCAATTTGCTAATTGCCATTTAGAGAAATCTGGTATGGACACTTATGGAT
GTACGTTAGAGACTTTTCGAGAATGTACAAATAAAATGTCACCTATTGCT
TTTAACACATATACACAATTCTTTGGTCAAGTGACCGATATATGTTTCTA
CTTTCAAAGTGAAATTTGGAGAGATAAAACTGAGgataccatcttgaaat
tatcgGAAAGTTCTAAACAAGCACTGAATGTATTATCTAAATCTgttcaa
caacaaaaagaagTTTTGTCAGCACAAGAAGAAAGTTTACAAAACCAACA
AGATATCATCAAGAATGAGAATTTATTGAAAGAAACACTATTGACATCAG
CTCAATCAGCAAAAGATGTATTTGCCGAAGTTCGTGAACAAgctcaacaa
caaaaaacaatgTTCTCAGAAACATTTGATAACatctttcaaagttttga
gaaaCTGGCTAATGTACAAAATATGCTTTTGGGTGAATTTATTGGATTTC
AGTCTATAGCTTTCTACCTTACAGCAACCATTGTTTGTTATTTGTTTACG
AGTACACCCCAAACGTCTGGTAGCCGACTTTGGCTCTTTGCAGCTTTATC
CTTGTTGATTGTATCAGAAAGAGTTTTCGTTGGAAAGATAGTTGATGATG
AATCTGAACAGTTAACCTCTGAACGAATGCACGAGAGAATTTGGGTTCTG
CGAAAAATCTTTCTGGTATTGGCGACAATTATTcttggcattttcatttt
tcgttaCAAagatttcaataaaatcaattatGGAATGTTACAAGAAATCC
AATTACAAGTGACTGAGTTGAGAAAGATTCAGCAAACTACCTCGCAGGTG
ACAACCAATTGTTTAGATGAAACAGACTCGTCAACATCTCTGGAGAAAAC
AATCATCAAAAAGGATCAACATCAACAACAAATAGAACATCAACAACGTT
TCGCTGAAGCTGCCAAGAAATTAGAaatgaCAGTTAGTTCGTTTGTGACA
AGTACACCACACAAAGTCAACTTATCACTCTTAGCTGAACAAACAGAAAA
TATATACAGATCCCTCTCCACCATCACCacaaaggagaagaaaaatcatt
CACGATTAGCAGAATTTTCGGATGACGATGATGTTTTGAATGACACACCG
ACTCCGCCATCTTTTTCGTCTTCATCTTCCAAAAAGAAAGatcgaagaaa
attttgtgttttgaatacaattaatgaaaatttgaacgaAAGTCGATACA
ATTTACGAAAGCGAAGGAGCAGTATAAACGGAACATTGAATAAATCTTCA
AATGGTgtcaaatgaaatttaaaacatttttgtatTACCTCACCTGTCTT
GTATAAATTTGACGCAATAAGTGTTTTTGTTGTAACTTTTCCATTTTTAT
GGTTCCGttcaatttaaaatattttcgtgttttttattggtaattttata
ttttggtcGTTTTTCTTGACCTTgaatttgtaaatattttctagtAATTT
TTTGTATACGCATTTCGCcttgtcaatattttttaagattcgaatttcga
ataaagtaaattttataaattaaaaaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00053608-protein

>TCONS_00053608-protein ID=TCONS_00053608-protein|Name=TCONS_00053608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MFLLQLICIYYMVVSTSTKEFEFSADEKRVQRGRETYEQFDKDFRFKNSK
CWRAALDHIDESCRQMSDIHQSYLALQFANCHLEKSGMDTYGCTLETFRE
CTNKMSPIAFNTYTQFFGQVTDICFYFQSEIWRDKTEDTILKLSESSKQA
LNVLSKSVQQQKEVLSAQEESLQNQQDIIKNENLLKETLLTSAQSAKDVF
AEVREQAQQQKTMFSETFDNIFQSFEKLANVQNMLLGEFIGFQSIAFYLT
ATIVCYLFTSTPQTSGSRLWLFAALSLLIVSERVFVGKIVDDESEQLTSE
RMHERIWVLRKIFLVLATIILGIFIFRYKDFNKINYGMLQEIQLQVTELR
KIQQTTSQVTTNCLDETDSSTSLEKTIIKKDQHQQQIEHQQRFAEAAKKL
EMTVSSFVTSTPHKVNLSLLAEQTENIYRSLSTITTKEKKNHSRLAEFSD
DDDVLNDTPTPPSFSSSSSKKKDRRKFCVLNTINENLNESRYNLRKRRSS
INGTLNKSSNGVK
Run BLAST on NCBI

transcript from alignment at scaffold_233:1246486..1258794+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053608 ID=TCONS_00053608|Name=TCONS_00053608|organism=Clytia hemisphaerica|type=transcript|length=12309bp|location=Sequence derived from alignment at scaffold_233:1246486..1258794+ (Clytia hemisphaerica)
atttaGATAAAGATCGATGAAAAATGTTTCTGTTACAACTAATTTGCATT
TATTATATGGTGGTATCAACATCAACAAAAGAGTTTGAGTTTTCAGCTGA
TGAGAAACGTGTTCAGAGAGGTAGAGAAACTTACGAACagtttgataaag
attttcgattcaaaaattcaaaatgttggCGTGCAGCATTGGATCATATA
GATGAAAGTTGTAGACAAATGAGTGATATTCATCAAAGTTATTTAGCTCT
TCAATTTGCTAATTGCCATTTAGAGAAATCTGGTATGGACACTTATGGAT
GTACGTTAGAGACTTTTCGAGAATGTACAAATAAAATGTCACCTATTGCT
TTTAACACATATACACAATTCTTTGGTCAAGTGACCGATATATGTTTCTA
CTTTCAAAGTGAAATTTGGAGAGATAAAACTGAGgataccatcttgaaat
tatcgGAAAGTTCTAAACAAGCACTGAATGTATTATCTAAATCTgttcaa
caacaaaaagaagTTTTGTCAGCACAAGAAGAAAGTTTACAAAACCAACA
AGATATCATCAAGAATGAGAATTTATTGAAAGAAACACTATTGACATCAG
CTCAATCAGCAAAAGATGTATTTGCCGAAGTTCGTGAACAAgctcaacaa
caaaaaacaatgTTCTCAGAAACATTTGATAACatctttcaaagttttga
gaaaCTGGCTAATGTACAAAATATGCTTTTGGGTGAATTTATTGGATTTC
AGTCTATAGCTTTCTACCTTACAGCAACCATTGTTTGTTATTTGTTTACG
AGTACACCCCAAACGTCTGGTAGCCGACTTTGGCTCTTTGCAGCTTTATC
CTTGTTGATTGTATCAGAAAGAGTTTTCGTTGGAAAGATAGTTGATGATG
AATCTGAACAGTTAACCTCTGTGAGTTTATATAATCACTATATCAATCTC
ATTACCAGTATTTTTTTACTCGATTTTGccttttcactttcactttcact
tttatgTTTCTATACTCAGAGTGTCAGACGTTCAGCGAGTTTACACTACA
CTTAtaccaagaatttattatagacactggataaccaacgagctatattt
tcattgatttctcatgttctagccttgtccgcagtaataaaattattatt
cactctccttccttcattaaacgatttttcgtaacattttaatcattttt
ttcatcctaacacagtcatttcaattcccaaataaaaattaagttttcct
tagagaggcgaacgcatcaaaataattgctaattacgtgccgttatgacg
tttcagttgcaagaaagatacgaaaaacatgctatgtatgaaaaattgaa
tgttgacaccagaaatttttcaaaatttaacctcaataaaaccaccgatc
caccacgagcctccaaaatattttcataccacGGTGAAGCCAAGACACCC
AAGTCTGATATATGTCGATCTTAGCTCTTCTCAGAAAGATGTTAGAAAGA
TATCGCCAACTTAAAATTCTGTGTCATTTTAGGctctttgtttgattttt
cttgtctgatgatgtttttgtcacaACAGATTTAATACATGTATCCGTta
agtattttagcatttatttccaaatttttggcgAGTAAATGTACAAATAG
ATAAAGATGAGGACTTTTTAAAAGTgagattattaatcatttttcaagat
CAGAgaacttcgagccgccatgacagttgtcctttgcggacaaagctaga
tcctcgattgttttcttaaactttaaataaaagaaagacaatgGTTCGCT
TTCCACCGTTTTATAcgttgtttatccagtgtatataATAAATTCATGCT
TATACAAACGTCTGATTGCAAACAACTCTCGTTGCGGCTCGTTTTATCGC
ATCCAATCAGATTTAAGTACTTTCCCTGTCAAAAAAACGACAATTCTGGT
TGGTTTGATAAAATAACGCGCTCCAAACAAAGCAGACAAAGTTTGTCGTG
TTTAATTTCTCTTGGGAATAACGTAGATGTTATTCTTTTGCCTTTgataa
caaaaaatattattgccTTGAGAATACGAAAATTTTCCGAATAGTTACCG
TAATTACCTATAACCAAATTCCCCTAACATTCAAaagcaaaatcacaaaa
attaataatagccactttttggtgattttggcgcttttgattgttaaggg
aacTTTTGGTTTGTTATAGGTAAGTACGATACGAGAAAGCCCTTAATTTG
ACTTAAAACATAACTGTATTTTTTTCCATACAGGAACGAATGCACGAGAG
AATTTGGGTTCTGCGAAAAATCTTTCTGGTATTGGCGACAATTATTcttg
gcattttcatttttcgttaCAAagatttcaataaaatcaattatGGAATG
TTACAAGAAATCCAATTACAAGTGACTGAGTTGAGAAAGATTCAGCAAAC
TACCTCGCAGGTTGGTTTGTATATTTCACCTCTCTAAATCTCTTTATGTT
TTAACTTTACGGTAATAATATAATATGTTTCTTTCGTTTTCTCGAGTATC
AAAGATCTACGTAATGTTTGAGCCGAACCTTTTGGAAAGCGACCCTTAAA
ACGactaaattttcgcgaaaaagtgacccttgagttaaacatttttcgaa
aaatttcctaAACATAGACTTTTATCGTGGTTTTCATACTCTTAAAGGGA
ACTCGAAAGGGGGGAATTCGACGGagaccattttgatttttatttgtttt
tgtaaCCTACAGAGACTTAGGAAGGTCAAAAGCCGACCCTTACTGTCCAC
GTACCCAGTAcctaattttggaaaaagtaCAAAGTACAAGTTTCTTTGAC
GTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNtctataagaatcactattaataagcatacatcaatgt
tcttagtcaaattactcaatttttttatgagatagattttttttttgctc
aggagggcttacttttacagaatatgtgtgtttcgacatgaaattttggt
tgcttggcgtgtttttatagaaaaactggccatattctataattttttat
aagcacattatcaattacttaggtattagcttttctcgagattggctctt
ttattcttcATGATTTtgggcacaaagatgcataactataaaccctcgaa
tgtgacgggagctcgatttttggagaaaaaaattttggggtaaatttcag
ctaaaaaacggctaaaaaaagggttttttggacttgtttttttctgaatt
tttgcatgaaagtaggttaaagatgactcaagcagatttttgtaaaaaaa
gaattttcagctcaaaaaacgcatatttatctataagaatcactattaat
aagcatacatcaatgttcttaaaatgatttttttgatgagatatgtaTTT
TTGCTCttgaagtcttgaatatgaaagaatatttcaaccgcatgaaattt
tggtttttaaacgtgttttttttttataagaaacaaacgactaattttaa
tagatcgtcactatttgtgttctaaatgattgtttaatggtcacgcttat
gtagatatcaattatatgtgttaaatgcataaccaggtaggtccataaaa
gtatcacttgtttcacAGGTGACAACCAATTGTTTAGATGAAACAGACTC
GTCAACATCTCTGGAGAAAACAATCATCAAAAAGGATCAACATCAACAAC
AAATAGAACATCAACAACGTTTCGCTGAAGCTGCCAAGAAATTAGAGTAA
GAAAATTCGCCAATAAAAATAAATCGGGAGGAAAAGGGGGGGAGTGCTAA
TtagcacataacgttgtttcaacatctAATCAGGGGTATAAAGTGGAGAT
TTCCAGGAAGGAGTGATAACCCTAATGTTTGGATAAAGGTATCAATAATA
TCATGTAAAGTAATGAAGCCCTATAGAAATCTCTTTTTTGTACATATTTA
caccccttttcacagacccagtgggaccCCTTCACACTGGAAATATCGGC
CAAAATATGGTTTCGggtggaaaattattttttgtttccactgaaaataa
tcaaataaaataatcctcgctgcaaaatatttactatttttcccatcccc
actgaattttctgacttaaaaacaaaattgaaatccccagccataaaaga
tATNAGTTTGTATATTTCACCTCTCTAAATCTctttatgttttaatttta
cgGTAATAATATAATATGTTTCTTTCGTTTTCTCGAGTATCAAAGATCTA
CGTAATGTTTGAGCCGAACCTTCTGGAAAGCGACCCTTAAAACGactaaa
ttttcgcgaaaaagtgacccttgagttaaacatttttcgaaaaatttcct
aAACATAGACTTTTATCATGGTTTCCATACTCTTAAAGGTAACCTACAGA
GACTTAGGAAGGTCAAAAGCCGACCCTTACTTTCCACGTACCCAGTAcct
aattttggaaaaagtaCAAAGTACAAGTTTCTTTgacgttttttggacct
accccggtggaggtcctataaattaacctttgtccgttcgtccgttcgtt
cgttcgttcgtttgttattagctttcctcgtgattggctcgttagttttt
tctgattttttgcacaaagatgcataactataaNNNNNNNNNNNNNNNNN
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NNNNNNaaaatatttactatttttcccatccccactgaattttctgactt
aaaaacaaaattgaaatccccagccataaaagatatgggaatatcaatcc
cattgagtttcagtccgttaattctatccccactggctgaaaaaatccta
ccgggtctgtgagaagggggtgtatttttACATTATTTTCTAGCTTATTT
ACGAGAGGCTCTATCAAGAAGCTCAGTCGGTAGAAAATTCGCCTTTAAtc
caagggttgtgggttcgattcCAGTCAACGCCAATGAgaagcttagattg
ggtaatttGATTAGGTTTTAAGTTACTGAATGAAAGCTGAGAGTATGTGT
GGCGCTCCGCAGCATTCGAATTTTCAGGTCTAGTGCAAATAGAAAAAGGG
ATAAACTTCCTCAGTCCTGGCTCCACCAATAGCCGCCAGATAAACACCAT
ATTTACTAATTACTATCATGCCACTCtgaaaatttgttcttttatttttt
agaatgaCAGTTAGTTCGTTTGTGACAAGTACACCACACAAAGTCAACTT
ATCACTCTTAGCTGAACAAACAGAAAATATATACAGATCCCTCTCCACCA
TCACCacaaaggagaagaaaaatcattCACGATTAGCAGAATTTTCGGAT
GACGATGATGTTTTGAATGACACACCGACTCCGCCATCTTTTTCGTCTTC
ATCTTCCAAAAAGAAAGatcgaagaaaattttgtgttttgaatacaatta
atgaaaatttgaacGTAAGTGTCTTTCTCTTTTTATAAGGTGAaaccaaa
ttaatttgttgttctatggGCTAAGATACTGAATGAatgcatacatgttt
ttttataagcaagtgtctgccccttggtcaggctcgtgtatgcttaagtt
gtCACAACATCCAGGCATAGCTTATCAGCTTATgtttctatatattaata
gcggtgctttgtgtgtctgtgtgtcaccactttcgttttcgctttgtttg
tgttttagaattgtgacttttagtctcttgctccacaaatNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccatct
acatttagtaattttaacttctgcccagctttgcccgatcctgtttttct
cttttcttttgtttgaaatgtattcgaatgtatttaacgatcgtatttat
taatgatattcgaattcttttcaaaacaaaacaagtttctattatagaaa
gaacatttcaaatgtaaatcaaaacataaaaattagaaagtttgtcgaac
aataacagcattcaaagggcgataaaaagcaagagaagaaattagtccat
ctctttcttcatataaaaacatttaagtgttaaaaaatgtgtacgtcatt
ttacatgtttaaattcgaaaagttatgacaagggtttaaaaaaagcaatt
tagaattgacttatttatctttttaaatctgataaaaacaaagttgcacg
attctttgtggctttcccgctttttcctaaagaattttaatttctacgtt
tcactcctctttaccatgacattttctcaaatacaccttatcggaaattc
cacctcctcgcgttgttgctacgcaacattttttgggaggtaaacaaagc
tcgatattgcggttttcaggcaaaaagccttacaaaacacccaaaatgTT
GATGCCAAAAGAGCCTCCAAATCAACTGAANNNNNNNNNNNNNNNNNNNN
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NNNNGctagcatcttgaaagctttgttttgtttgtttttttcaaattcag
tgtatttttaggaacataAACAAGCCAGATATAAGCAAATGAGTTCTTGT
TTTAAGCGGGAACTTTTATACAGGTCTAGAACTCATGTAGTATATTTACG
TGACGGAAATGTAGTGCTGAAGCTGGGCCGTACTACGCAAGCGTACTCCA
TGGATTGCTAGCCATACCGTCGCTACTCGCGCTaccatttatgtttacct
cccaatttcAACGGATCCATTTTAGCGCAATTGTTcttgtggaatttccg
ataaggtgtattgtcgaaaactggacggcgtgtttaatgcgagcgaagcg
agaaaaagatctcctagggagggttagagtcaaactttgaagatatcttt
ttattcatttgatcgtttttttaagccagcttcaacatccaaataacctg
ataacagctgttcataattttcttacgcgcacggtaaacctctgaaggcg
cttgaaaattatacataagAGGAAAATATAGTCCTCCcgtggaaaattct
acaacaagaatcttgttgtgcgccggaaagctAAAAACTGATACAGCACC
CTATTCATGAACACAATcccgcaactttgttgtcgttcttagtcctttta
gacgaacgcggtccttacgatttcgagattgcatattcgtcagattgttt
gttttcacacatccctttagagcttcagcgtggtgtgcagaaaacattcg
caatctgatctcaggttacatccaaaggacttttagtgctttcagctaca
gcttaaccggcgtgcgacgccgggtaccggctagtattatatgtttatga
atcatgcttatgattcacccgaGCCAAGTTTTAAGTGGAATTTCAGAATT
TCTAAagaatttgttcagattttgggagcagtggaatatagctagccgtg
gaatgtcttttttttacttgacctcttcCAAACCTTTtgaaacagataaa
aaatgacagcttgaaagatatttcaggctgacataataatgcttatttta
tgcttaggaattctgaaaatctgagccttcatatgcttataagcatGTAT
AAGGTTTTATATTGAGTTGCCTTACACGCTATCTCAAAAGTATAAGGACA
CTTTCCTTTCTTAACACTTTCTTGGCACCTTTTTTATTATTCCGAAAGGA
TTTTGTTACTTTAtgatagactagtaaaccacgtcgttgtatttcgctgc
aatTGTATTTCATTTATATTCACTTGATattaataaatttatttgaagaa
aaataagtGACTGGAACGATTTGGaaaggttccaaataaacggagggggg
ggctggaaaattttcaaaattgtaattacgaaaacccaaaaataaggtaa
atataggctaaaatcaggctatttagagcagaataagggaccttctcttt
gaaagttgaataaaaattaataaacagggggtcctaataaggtctggGGG
GTTggtaaattttcgaaaaataacaagcgggggggggggccgtttatttg
gaaccttaAAGTAACCCGCACAAAATCGAGGATGGTCATAACGCTgacat
taatttttcttttcaggaAAGTCGATACAATTTACGAAAGCGAAGGAGCA
GTATAAACGGAACATTGAATAAATCTTCAAATGGTgtcaaatgaaattta
aaacatttttgtatTACCTCACCTGTCTTGTATAAATTTGACGCAATAAG
TGTTTTTGTTGTAACTTTTCCATTTTTATGGTTCCGttcaatttaaaata
ttttcgtgttttttattggtaattttatattttggtcGTTTTTCTTGACC
TTgaatttgtaaatattttctagtAATTTTTTGTATACGCATTTCGCctt
gtcaatattttttaagattcgaatttcgaataaagtaaattttataaatt
aaaaaaaaa

Coding sequence (CDS) from alignment at scaffold_233:1246486..1258794+

>TCONS_00053608 ID=TCONS_00053608|Name=TCONS_00053608|organism=Clytia hemisphaerica|type=CDS|length=7710bp|location=Sequence derived from alignment at scaffold_233:1246486..1258794+ (Clytia hemisphaerica)
ATGTTTCTGTTACAACTAATTTGCATTTATTATATGGTGGTATCAACATC
AACAAAAGAGTTTGAGTTTTCAGCTGATGAGAAACGTGTTCAGAGAGGTA
GAGAAACTTACGAACagtttgataaagattttcgattcaaaaattcaaaa
tgttggCGTGCAGCATTGGATCATATAGATGAAAGTTGTAGACAAATGAG
TGATATTCATCAAAGTTATTTAGCTCTTCAATTTGCTAATTGCCATTTAG
AGAAATCTGGTATGGACACTTATGGATGTACGTTAGAGACTTTTCGAGAA
TGTACAAATAAAATGTCACCTATTGCTTTTAACACATATACACAATTCTT
TGGTCAAGTGACCGATATATGTTTCTACTTTCAAAGTGAAATTTGGAGAG
ATAAAACTGAGgataccatcttgaaattatcgGAAAGTTCTAAACAAGCA
CTGAATGTATTATCTAAATCTgttcaacaacaaaaagaagTTTTGTCAGC
ACAAGAAGAAAGTTTACAAAACCAACAAGATATCATCAAGAATGAGAATT
TATTGAAAGAAACACTATTGACATCAGCTCAATCAGCAAAAGATGTATTT
GCCGAAGTTCGTGAACAAgctcaacaacaaaaaacaatgTTCTCAGAAAC
ATTTGATAACatctttcaaagttttgagaaaCTGGCTAATGTACAAAATA
TGCTTTTGGGTGAATTTATTGGATTTCAGTCTATAGCTTTCTACCTTACA
GCAACCATTGTTTGTTATTTGTTTACGAGTACACCCCAAACGTCTGGTAG
CCGACTTTGGCTCTTTGCAGCTTTATCCTTGTTGATTGTATCAGAAAGAG
TTTTCGTTGGAAAGATAGTTGATGATGAATCTGAACAGTTAACCTCTGAA
CGAATGCACGAGAGAATTTGGGTTCTGCGAAAAATCTTTCTGGTATTGGC
GACAATTATTcttggcattttcatttttcgttaCAAagatttcaataaaa
tcaattatGGAATGTTACAAGAAATCCAATTACAAGTGACTGAGTTGAGA
AAGATTCAGCAAACTACCTCGCAGGTGACAACCAATTGTTTAGATGAAAC
AGACTCGTCAACATCTCTGGAGAAAACAATCATCAAAAAGGATCAACATC
AACAACAAATAGAACATCAACAACGTTTCGCTGAAGCTGCCAAGAAATTA
GAaatgaCAGTTAGTTCGTTTGTGACAAGTACACCACACAAAGTCAACTT
ATCACTCTTAGCTGAACAAACAGAAAATATATACAGATCCCTCTCCACCA
TCACCacaaaggagaagaaaaatcattCACGATTAGCAGAATTTTCGGAT
GACGATGATGTTTTGAATGACACACCGACTCCGCCATCTTTTTCGTCTTC
ATCTTCCAAAAAGAAAGatcgaagaaaattttgtgttttgaatacaatta
atgaaaatttgaacgaAAGTCGATACAATTTACGAAAGCGAAGGAGCAGT
ATAAACGGAACATTGAATAAATCTTCAAATGGTgtcaaatgaATGTTTCT
GTTACAACTAATTTGCATTTATTATATGGTGGTATCAACATCAACAAAAG
AGTTTGAGTTTTCAGCTGATGAGAAACGTGTTCAGAGAGGTAGAGAAACT
TACGAACagtttgataaagattttcgattcaaaaattcaaaatgttggCG
TGCAGCATTGGATCATATAGATGAAAGTTGTAGACAAATGAGTGATATTC
ATCAAAGTTATTTAGCTCTTCAATTTGCTAATTGCCATTTAGAGAAATCT
GGTATGGACACTTATGGATGTACGTTAGAGACTTTTCGAGAATGTACAAA
TAAAATGTCACCTATTGCTTTTAACACATATACACAATTCTTTGGTCAAG
TGACCGATATATGTTTCTACTTTCAAAGTGAAATTTGGAGAGATAAAACT
GAGgataccatcttgaaattatcgGAAAGTTCTAAACAAGCACTGAATGT
ATTATCTAAATCTgttcaacaacaaaaagaagTTTTGTCAGCACAAGAAG
AAAGTTTACAAAACCAACAAGATATCATCAAGAATGAGAATTTATTGAAA
GAAACACTATTGACATCAGCTCAATCAGCAAAAGATGTATTTGCCGAAGT
TCGTGAACAAgctcaacaacaaaaaacaatgTTCTCAGAAACATTTGATA
ACatctttcaaagttttgagaaaCTGGCTAATGTACAAAATATGCTTTTG
GGTGAATTTATTGGATTTCAGTCTATAGCTTTCTACCTTACAGCAACCAT
TGTTTGTTATTTGTTTACGAGTACACCCCAAACGTCTGGTAGCCGACTTT
GGCTCTTTGCAGCTTTATCCTTGTTGATTGTATCAGAAAGAGTTTTCGTT
GGAAAGATAGTTGATGATGAATCTGAACAGTTAACCTCTGAACGAATGCA
CGAGAGAATTTGGGTTCTGCGAAAAATCTTTCTGGTATTGGCGACAATTA
TTcttggcattttcatttttcgttaCAAagatttcaataaaatcaattat
GGAATGTTACAAGAAATCCAATTACAAGTGACTGAGTTGAGAAAGATTCA
GCAAACTACCTCGCAGGTGACAACCAATTGTTTAGATGAAACAGACTCGT
CAACATCTCTGGAGAAAACAATCATCAAAAAGGATCAACATCAACAACAA
ATAGAACATCAACAACGTTTCGCTGAAGCTGCCAAGAAATTAGAaatgaC
AGTTAGTTCGTTTGTGACAAGTACACCACACAAAGTCAACTTATCACTCT
TAGCTGAACAAACAGAAAATATATACAGATCCCTCTCCACCATCACCaca
aaggagaagaaaaatcattCACGATTAGCAGAATTTTCGGATGACGATGA
TGTTTTGAATGACACACCGACTCCGCCATCTTTTTCGTCTTCATCTTCCA
AAAAGAAAGatcgaagaaaattttgtgttttgaatacaattaatgaaaat
ttgaacgaAAGTCGATACAATTTACGAAAGCGAAGGAGCAGTATAAACGG
AACATTGAATAAATCTTCAAATGGTgtcaaatgaATGTTTCTGTTACAAC
TAATTTGCATTTATTATATGGTGGTATCAACATCAACAAAAGAGTTTGAG
TTTTCAGCTGATGAGAAACGTGTTCAGAGAGGTAGAGAAACTTACGAACa
gtttgataaagattttcgattcaaaaattcaaaatgttggCGTGCAGCAT
TGGATCATATAGATGAAAGTTGTAGACAAATGAGTGATATTCATCAAAGT
TATTTAGCTCTTCAATTTGCTAATTGCCATTTAGAGAAATCTGGTATGGA
CACTTATGGATGTACGTTAGAGACTTTTCGAGAATGTACAAATAAAATGT
CACCTATTGCTTTTAACACATATACACAATTCTTTGGTCAAGTGACCGAT
ATATGTTTCTACTTTCAAAGTGAAATTTGGAGAGATAAAACTGAGgatac
catcttgaaattatcgGAAAGTTCTAAACAAGCACTGAATGTATTATCTA
AATCTgttcaacaacaaaaagaagTTTTGTCAGCACAAGAAGAAAGTTTA
CAAAACCAACAAGATATCATCAAGAATGAGAATTTATTGAAAGAAACACT
ATTGACATCAGCTCAATCAGCAAAAGATGTATTTGCCGAAGTTCGTGAAC
AAgctcaacaacaaaaaacaatgTTCTCAGAAACATTTGATAACatcttt
caaagttttgagaaaCTGGCTAATGTACAAAATATGCTTTTGGGTGAATT
TATTGGATTTCAGTCTATAGCTTTCTACCTTACAGCAACCATTGTTTGTT
ATTTGTTTACGAGTACACCCCAAACGTCTGGTAGCCGACTTTGGCTCTTT
GCAGCTTTATCCTTGTTGATTGTATCAGAAAGAGTTTTCGTTGGAAAGAT
AGTTGATGATGAATCTGAACAGTTAACCTCTGAACGAATGCACGAGAGAA
TTTGGGTTCTGCGAAAAATCTTTCTGGTATTGGCGACAATTATTcttggc
attttcatttttcgttaCAAagatttcaataaaatcaattatGGAATGTT
ACAAGAAATCCAATTACAAGTGACTGAGTTGAGAAAGATTCAGCAAACTA
CCTCGCAGGTGACAACCAATTGTTTAGATGAAACAGACTCGTCAACATCT
CTGGAGAAAACAATCATCAAAAAGGATCAACATCAACAACAAATAGAACA
TCAACAACGTTTCGCTGAAGCTGCCAAGAAATTAGAaatgaCAGTTAGTT
CGTTTGTGACAAGTACACCACACAAAGTCAACTTATCACTCTTAGCTGAA
CAAACAGAAAATATATACAGATCCCTCTCCACCATCACCacaaaggagaa
gaaaaatcattCACGATTAGCAGAATTTTCGGATGACGATGATGTTTTGA
ATGACACACCGACTCCGCCATCTTTTTCGTCTTCATCTTCCAAAAAGAAA
Gatcgaagaaaattttgtgttttgaatacaattaatgaaaatttgaacga
AAGTCGATACAATTTACGAAAGCGAAGGAGCAGTATAAACGGAACATTGA
ATAAATCTTCAAATGGTgtcaaatgaATGTTTCTGTTACAACTAATTTGC
ATTTATTATATGGTGGTATCAACATCAACAAAAGAGTTTGAGTTTTCAGC
TGATGAGAAACGTGTTCAGAGAGGTAGAGAAACTTACGAACagtttgata
aagattttcgattcaaaaattcaaaatgttggCGTGCAGCATTGGATCAT
ATAGATGAAAGTTGTAGACAAATGAGTGATATTCATCAAAGTTATTTAGC
TCTTCAATTTGCTAATTGCCATTTAGAGAAATCTGGTATGGACACTTATG
GATGTACGTTAGAGACTTTTCGAGAATGTACAAATAAAATGTCACCTATT
GCTTTTAACACATATACACAATTCTTTGGTCAAGTGACCGATATATGTTT
CTACTTTCAAAGTGAAATTTGGAGAGATAAAACTGAGgataccatcttga
aattatcgGAAAGTTCTAAACAAGCACTGAATGTATTATCTAAATCTgtt
caacaacaaaaagaagTTTTGTCAGCACAAGAAGAAAGTTTACAAAACCA
ACAAGATATCATCAAGAATGAGAATTTATTGAAAGAAACACTATTGACAT
CAGCTCAATCAGCAAAAGATGTATTTGCCGAAGTTCGTGAACAAgctcaa
caacaaaaaacaatgTTCTCAGAAACATTTGATAACatctttcaaagttt
tgagaaaCTGGCTAATGTACAAAATATGCTTTTGGGTGAATTTATTGGAT
TTCAGTCTATAGCTTTCTACCTTACAGCAACCATTGTTTGTTATTTGTTT
ACGAGTACACCCCAAACGTCTGGTAGCCGACTTTGGCTCTTTGCAGCTTT
ATCCTTGTTGATTGTATCAGAAAGAGTTTTCGTTGGAAAGATAGTTGATG
ATGAATCTGAACAGTTAACCTCTGAACGAATGCACGAGAGAATTTGGGTT
CTGCGAAAAATCTTTCTGGTATTGGCGACAATTATTcttggcattttcat
ttttcgttaCAAagatttcaataaaatcaattatGGAATGTTACAAGAAA
TCCAATTACAAGTGACTGAGTTGAGAAAGATTCAGCAAACTACCTCGCAG
GTGACAACCAATTGTTTAGATGAAACAGACTCGTCAACATCTCTGGAGAA
AACAATCATCAAAAAGGATCAACATCAACAACAAATAGAACATCAACAAC
GTTTCGCTGAAGCTGCCAAGAAATTAGAaatgaCAGTTAGTTCGTTTGTG
ACAAGTACACCACACAAAGTCAACTTATCACTCTTAGCTGAACAAACAGA
AAATATATACAGATCCCTCTCCACCATCACCacaaaggagaagaaaaatc
attCACGATTAGCAGAATTTTCGGATGACGATGATGTTTTGAATGACACA
CCGACTCCGCCATCTTTTTCGTCTTCATCTTCCAAAAAGAAAGatcgaag
aaaattttgtgttttgaatacaattaatgaaaatttgaacgaAAGTCGAT
ACAATTTACGAAAGCGAAGGAGCAGTATAAACGGAACATTGAATAAATCT
TCAAATGGTgtcaaatgaATGTTTCTGTTACAACTAATTTGCATTTATTA
TATGGTGGTATCAACATCAACAAAAGAGTTTGAGTTTTCAGCTGATGAGA
AACGTGTTCAGAGAGGTAGAGAAACTTACGAACagtttgataaagatttt
cgattcaaaaattcaaaatgttggCGTGCAGCATTGGATCATATAGATGA
AAGTTGTAGACAAATGAGTGATATTCATCAAAGTTATTTAGCTCTTCAAT
TTGCTAATTGCCATTTAGAGAAATCTGGTATGGACACTTATGGATGTACG
TTAGAGACTTTTCGAGAATGTACAAATAAAATGTCACCTATTGCTTTTAA
CACATATACACAATTCTTTGGTCAAGTGACCGATATATGTTTCTACTTTC
AAAGTGAAATTTGGAGAGATAAAACTGAGgataccatcttgaaattatcg
GAAAGTTCTAAACAAGCACTGAATGTATTATCTAAATCTgttcaacaaca
aaaagaagTTTTGTCAGCACAAGAAGAAAGTTTACAAAACCAACAAGATA
TCATCAAGAATGAGAATTTATTGAAAGAAACACTATTGACATCAGCTCAA
TCAGCAAAAGATGTATTTGCCGAAGTTCGTGAACAAgctcaacaacaaaa
aacaatgTTCTCAGAAACATTTGATAACatctttcaaagttttgagaaaC
TGGCTAATGTACAAAATATGCTTTTGGGTGAATTTATTGGATTTCAGTCT
ATAGCTTTCTACCTTACAGCAACCATTGTTTGTTATTTGTTTACGAGTAC
ACCCCAAACGTCTGGTAGCCGACTTTGGCTCTTTGCAGCTTTATCCTTGT
TGATTGTATCAGAAAGAGTTTTCGTTGGAAAGATAGTTGATGATGAATCT
GAACAGTTAACCTCTGAACGAATGCACGAGAGAATTTGGGTTCTGCGAAA
AATCTTTCTGGTATTGGCGACAATTATTcttggcattttcatttttcgtt
aCAAagatttcaataaaatcaattatGGAATGTTACAAGAAATCCAATTA
CAAGTGACTGAGTTGAGAAAGATTCAGCAAACTACCTCGCAGGTGACAAC
CAATTGTTTAGATGAAACAGACTCGTCAACATCTCTGGAGAAAACAATCA
TCAAAAAGGATCAACATCAACAACAAATAGAACATCAACAACGTTTCGCT
GAAGCTGCCAAGAAATTAGAaatgaCAGTTAGTTCGTTTGTGACAAGTAC
ACCACACAAAGTCAACTTATCACTCTTAGCTGAACAAACAGAAAATATAT
ACAGATCCCTCTCCACCATCACCacaaaggagaagaaaaatcattCACGA
TTAGCAGAATTTTCGGATGACGATGATGTTTTGAATGACACACCGACTCC
GCCATCTTTTTCGTCTTCATCTTCCAAAAAGAAAGatcgaagaaaatttt
gtgttttgaatacaattaatgaaaatttgaacgaAAGTCGATACAATTTA
CGAAAGCGAAGGAGCAGTATAAACGGAACATTGAATAAATCTTCAAATGG
Tgtcaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033824XLOC_033824Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053608-exon-scaffold_233-1491911889:1246486..1247405TCONS_00053608-exon-scaffold_233-1491911889:1246486..1247405Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1510915933:1246486..1247405TCONS_00053608-exon-scaffold_233-1510915933:1246486..1247405Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1575043694:1246486..1247405TCONS_00053608-exon-scaffold_233-1575043694:1246486..1247405Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1491911889:1248769..1248945TCONS_00053608-exon-scaffold_233-1491911889:1248769..1248945Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1510915933:1248769..1248945TCONS_00053608-exon-scaffold_233-1510915933:1248769..1248945Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1575043694:1248769..1248945TCONS_00053608-exon-scaffold_233-1575043694:1248769..1248945Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1491911889:1251154..1251281TCONS_00053608-exon-scaffold_233-1491911889:1251154..1251281Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1510915933:1251154..1251281TCONS_00053608-exon-scaffold_233-1510915933:1251154..1251281Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1575043694:1251154..1251281TCONS_00053608-exon-scaffold_233-1575043694:1251154..1251281Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1491911889:1255238..1255499TCONS_00053608-exon-scaffold_233-1491911889:1255238..1255499Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1510915933:1255238..1255499TCONS_00053608-exon-scaffold_233-1510915933:1255238..1255499Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1575043694:1255238..1255499TCONS_00053608-exon-scaffold_233-1575043694:1255238..1255499Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1491911889:1258452..1258794TCONS_00053608-exon-scaffold_233-1491911889:1258452..1258794Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1510915933:1258452..1258794TCONS_00053608-exon-scaffold_233-1510915933:1258452..1258794Clytia hemisphaericaexon
TCONS_00053608-exon-scaffold_233-1575043694:1258452..1258794TCONS_00053608-exon-scaffold_233-1575043694:1258452..1258794Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053608-proteinTCONS_00053608-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1246486..1258794 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.051	13.1471	147.173	159.26	7.96903	5.92407	5.23373	5.42661	3.13534	3.19828	3.39259	2.66744	2.32895	3.21981	3.69105	3.18752	3.17099	3.13228	1.72166	1.80159	4.21103	4.83049	6.12304	6.82153	2.9608	4.61378	1.47051	1.08895	3.57094	4.00947
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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