TCONS_00053609 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053609
Unique Name	TCONS_00053609
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	459

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_233:1357745..1364970+

transcript sequence

>TCONS_00053609 ID=TCONS_00053609|Name=TCONS_00053609|organism=Clytia hemisphaerica|type=transcript|length=459bp
agaaaagtgattctgATCAAAGaaaaaacaatacttgaaatggaaacaaa
ttCAGCAACCAAACAACGCAACCATGGAATCATTCTACTGTACCTTCAAG
ACTTTTAATTGAAGCCTTTGCTCGAAGAAATATCTTGCAGTcggtaaatt
aaattgaattctTTTGGATTTCCAATACATCCAATGGACAGAGTATTGAT
ACATTACGCTTCAGAATGACAGACTTTACCATTCAGATCAGTGGCTTGAA
AACTTAATTAAAACTCATATCTCCTTCGCTCCAGACATAAACTTGTAGAA
TGGGTAAACTAAACATTCATCGGAAATCTCAGAAATCACagttttaatga
ttttaatgacacTCAACAGATTATTGtacacaaaatttcaaatactGTAT
GCAAGGTTCTAATAACTAGACTCGACAGGAATTTGATTGATGGTGAGATG
GTGGATTTN

Run BLAST on NCBI

transcript from alignment at scaffold_233:1357745..1364970+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053609 ID=TCONS_00053609|Name=TCONS_00053609|organism=Clytia hemisphaerica|type=transcript|length=7226bp|location=Sequence derived from alignment at scaffold_233:1357745..1364970+ (Clytia hemisphaerica)
agaaaagtgattctgATCAAAGGTATGTTTTGCTATTGCCAAGTAATTTT
GTCATAATGTTTCCATGTCAACACTTTGAAGAGAAGTAATACTGCTCTAG
TTGGTCTGTGAATTGGggtatatgcatgttagcctccactgatgcAAGTT
ACCCTTTTTCACGGTATTGTTATTGAATTGacgaattgaattgaaatgaa
gTGTGAAAGAATccttgactttaaaaaaaaaaaaacacttgttCATGAAT
ATATGGACGTAAGGTTTCATCTTATTTAAATAATATAATACAGtgacaag
taaaaaaaaacaacaacaaacaaagatAGATAACTGGATAAGACAAGGCC
AAAGAAAACCCAGCAATTCCACTGTCTATTCTGTCTGCTTATCTGTCTGT
GATTTGCGAGTTGTTTTTGGTAAGCGAGACATAGCGTTACTTACCGCACC
AAATTGGCAATCAATGTAAAGGAGAGTGAAAAAGTTTTCGTATGAGAGCC
AATCAAGTCGTTTTATCAGTTATGCATAAATTATGTGTTTGTCTCGCTTA
GACAGTCAAAACAAACGCTGATTTACGCGGgaaacttttttctcctttct
atcattcaggcaggtcggTTCAGTTCaggcagcgggcctgactgctttca
TTTCTCTTACCTACCCCCCTTAGACGCCACCCACCTTGCTCTTCCTTAAT
CCAGCAGcgaaagaaaagaaagagaagactctaagctatccaacaagcta
tgaacaagcttctaattccttctagatctcgagatataagcctttaaagt
ttgaactagcgattttcttttaaaaactcagaaaaaaatgaccctGGCAC
TATAAAGGGTTAAGAACCAGTAATTTAACCCTATTCGTACTAGGGGGGGG
GCTCTTTTTGTTCGGAGGTCAAACTATATTGGTAATAGCTCCTGAAATAA
TAGAGCTTTTGCCGTGAAATTTTCTGTAAATTCCTAACTTTTATTTAACT
TCAAAATAAATAAAAATTGACACCTAAAGATTTTCACACCTTGAGCATGA
TGACATTTCTGACAGtaaggtgtcacaaaaattgacacttttccaataca
aatttatttttaatgttcaAATATATCAGTTAAACCatatttcattgaat
atttaggataaaataggcattttaaactcaggcaacttttttctaaagcc
tttgttagaatacaatagtatgagtgacgtcatcaaaaaaaaattgtcaa
aagttaccttacgtgacaaggaacttgtgtgccaaatttcatccaaaaag
actcACTAGATCTAAAGTTAaagggtggtacaggaaaagccccccccccc
ctagttctgaaccgcgcCTAAAAAGCCTAGGTTCAATAGggttaagggct
ctggacatacccaatttttcgattttacaccaacttaaatggcaatttct
gcattttaaaaagattaatgtataactttttttatatgtcctgttaaacc
tacctttttagaattaaaaaatcgaaaaattgaaatgaaaaaattaaacg
aagaagaaaacgaagagtttttcgaagaagagtatttcacctttcaaagc
cctaatctcggtaaaaatcaaacattttggattttttttggtttaggtga
tgtatctatttagtatctaaaaatacaatttcggaaaatttttgtggaag
tatcttccctttaaaatttccaaaaaacctcatttttggcaattttctac
actaaatttccatacgaaaacagctataacttgggatgtagccaaataga
aaatttttccgaaaacatctaaataaagaaattatttgtcattaacttaa
aaaaagtttgaaacaataaaatgatttccccaaggagattaagctttttt
tgtgaaaagtatatgaattgAGTCGTTATGATATTTTATTAAGatccatg
ccacacttattctttaattactcatgatgtagatacttaaattcattttt
tcaaaagcagtttgttcttaaacatgtcaaagaagcgaaaacataaggtt
ttatcttcaaattctaaaattaatttttcacttTGACCAGCAGAGCCCTT
AAATCACTGGGTGAAAAGCTGTCTTcaagaattttccaaatttggaaaat
gtcatatttcctgaaatttccaaaaaaaaagtcgtatttcctgaattttc
gaaatctgaccttttaatttacaaaaagatctgaaagctgatattttcag
atatttcaaaattcgaaatttcacNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNATTCaaataaaaagtgtttctttcCTGTTA
TTATTCCTTATATGGAAGTAATTGCTCTCCTTAAGACTTTATTTTGAACT
ATCTTTGCTATGACGTAAATTGAGGATTGTGCAAGGGCCGAAGGCTAGAT
AAAATATAAGATAAAATCGAAGCCAAAGATAAATACTGGAATATCCGCCA
TGACTTGcaagaaataaaatgaaataactCAAACCCTAAATACGATAAAC
AAAGAATGCCTTTTAACCATAATACCTAAACAGCTTCGACTCTATCTTTG
AATTTAAACTAAAAACTATAGGCTTTTCGAGCAAACAGTATACAAGAAAA
TAACAGACGACAGTAATAAAGTTCGGTTGAACTGTAGCGATATATTTTGA
GTAATAAGCTaggatgaaaaaattttaacaaagtAATGGGAATCTTTAAC
TAAATCCATTGTATGTACCACGATTGGTGTAACCTGAAAGTAGATAACGG
AAAGACAAATGTAACAGATATGTTGTACGTAAGGGTGGGATGGGTGGGCA
GTATTTATCTTTGGCTTCGATTTTATCTTATAAAATCTGGATTGCACTGC
AGGCCTTCGGCCCTTGCACAATCCTCAATTTTATGACGATAAAATCTCCG
CCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNCGAATAGAGGATGAGTGGGTTTGAGTTATGACTTTTATTTCTTGCC
AGTCATGGCGGATATTCCAGTATTTATCTGGCGGAGATTTTATCGTCATA
AAATCGCATATtagatttgtttattattttcaacaaaagagaGTGAAAGA
CTATggtgaaagaaagaaaaatgtggtTTATTATCTTAAATCAATAAACA
TAGTGTTGAGCCAATTATATGTGAGTTTTCAATCATgtgacttttgagtg
aacatgtgaaaaatttcgattttatttcgttatttttctcgaAAGTTCTT
TGTAAGATGAAGTTGTGTGTTGGTTATGAATTTTTAACTtgtaaaattat
atattttcttatcatttaatgttttgattttcttttcagaaaaaacaata
cttgaaatggaaacaaattCAGCAACCAAACAACGCAACCATGGAATCAT
TCTACTGTACCTTCAAGACTTTTAATTGAAGCCTTTGCTCGAAGAAATAT
CTTGCAGTcggtaaattaaattgaattctTTTGGATTTCCAATACATCCA
ATGGACAGAGTATTGATACATTACGCTTCAGAATGACAGACTTTACCATT
CAGATCAGTGGCTTGAAAACTTAATTAAAACTCATATCTCCTTCGCTCCA
GACATAAACTTGTAGAATGGGTAAACTAAACATTCATCGGAAATCTCAGA
AATCACagttttaatgattttaatgacacTCAACAGATTATTGtacacaa
aatttcaaatactGTATGCAAGGTTCTAATAACTAGACTCGACAGGAATT
TGATTGATGGTGAGATGGTGGATTTN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033825	XLOC_033825	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053609-exon-scaffold_233-1491911889:1357745..1357766	TCONS_00053609-exon-scaffold_233-1491911889:1357745..1357766	Clytia hemisphaerica	exon
TCONS_00053609-exon-scaffold_233-1510915933:1357745..1357766	TCONS_00053609-exon-scaffold_233-1510915933:1357745..1357766	Clytia hemisphaerica	exon
TCONS_00053609-exon-scaffold_233-1575043694:1357745..1357766	TCONS_00053609-exon-scaffold_233-1575043694:1357745..1357766	Clytia hemisphaerica	exon
TCONS_00053609-exon-scaffold_233-1491911889:1364534..1364970	TCONS_00053609-exon-scaffold_233-1491911889:1364534..1364970	Clytia hemisphaerica	exon
TCONS_00053609-exon-scaffold_233-1510915933:1364534..1364970	TCONS_00053609-exon-scaffold_233-1510915933:1364534..1364970	Clytia hemisphaerica	exon
TCONS_00053609-exon-scaffold_233-1575043694:1364534..1364970	TCONS_00053609-exon-scaffold_233-1575043694:1364534..1364970	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_233	supercontig	scaffold_233:1357745..1364970 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.362096	0.212882	0.394226	0	24.1424	18.6365	66.0943	64.3587	13.9304	17.233	28.9253	16.5955	11.914	18.2381	5.61535	4.63879	4.51995	4.56231	38.0399	34.4668	12.1976	14.4232	11.0159	11.2388	3.43499	13.1863	26.6864	17.4083	9.61684	4.50391

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00053609 vs. Swiss-Prot (Human)

BLAST of TCONS_00053609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00053609 (transcript) - C. hemisphaerica