TCONS_00053610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053610
Unique NameTCONS_00053610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053610 ID=TCONS_00053610|Name=TCONS_00053610|organism=Clytia hemisphaerica|type=transcript|length=1916bp
gtttataaaagaaatttgatgCCATCAGTACTACATCAGCTATATAACCT
TTgcataaaacaaaaaagagaTCTAGAAAATAAACATGGAGGGTAGTTCA
TGctgcaataaatatttttggtttgaaGTTCTCATTCTGTTTGTCTCGTT
ATATTTTCTGATAAATTATATTGTTGACCATTGGATTTCAACAAAAGTTA
AACAAAATGTTCTGGTGACAGGCTGCGATTCAGGTTTTGGTTTGCAAACA
GCTTTAGTATTAAGTGaatctaattgtaaagtttttgctggttgcttaac
ccaagatggTGTTAAACAACTTGAGAATGACGCAAGGTTTCAAGGGATGG
CTTTTATCATGGATGTGACCAAAGATGAAGATGTTCAAAATACAAAGAAG
ATTATCGAAGAAAATGGTGgAATTGATGGTCTGGTAAACAACGCTGGAAT
TCTTATCCATGGTTTAATCGAATGGCAATCTATCGAATTAATGAAGAAAA
CGTTCGAAGTGAATTATTGGGGGCTTGTTCGTGTTACCAAAGTCATTCTA
CCATTATTGAAAAAGTCACGTGGTCGTATCGTCAATCTGACTAGTATAGG
AGGTAGACTCACGCCACCGTATACAGCTCCTTACTATTGTTCCAAATATG
CAGCCGAAGCATTTTCTGATAGCTTACGTCTTGAAGTTAAACCTTGGGGT
ATAAGTGTTCACATTATTGAACCATCCTATTATAAAACTGCAATCACAAA
TGAAGAGACTGTTCGACGTAATTGGCAGAAACTTTGGAATGAACAACCTG
ATGAAatccaaaatgaaattgatgaGAAAACTTTCCACGAATTTGTTACT
GCATTTTACAAGCAAATAAGTATCGGTTCAGAAAACATCATTGAAGTTGC
ATTGGTGATTAAGCATGCATTACTGGCAAAGTTTCCGAGGCGTCGATACA
TCACTGGTGTTAATTGTGGACTAGCAGCTTTCGCAACCCATTTACCGACT
GTACTTGGAGACTTCTTTATGGCATTGAGCGTACCTCTTTTACGTCCCAT
CAAAACACCAAAGAAAACAAACTGAACGTGGTTACCATCGTAACAACCAA
CCAATACATCAGTCGTGcaataattcatgtaaaattTACACTAGTAATAT
TACATCATCTTTAATcaactttaatgggattaattatcgcggggattaaa
tttcgcggatttggttGTGATCTGCGAAAATAAGAACCAGTGGTAGTTTA
AAAACGTCTTATCTTTTCAAAAGTCCACCTTTAACAtgtttacccccccc
ccccatcaaagaagcgctaataatgcgtatttcacaGCCAACATGCATAG
TCTGGCagtaaaatagcaaaaatagtaCTCACAAAATCGTGAGAATTAtc
tcaatattttcaaatctcACAATAGAGCCATCCACGAAATTACGTctccg
cgaaatcttaaaatttcccGCGAAAACTAACCCCATTAATGTAAGGCTTT
ATTGGTGTaatgaataaattttgaaaggcTTAATTTTTACCATATCTAGA
AATATGTAGAATTTTTCCTTGTAGTTTTAAAATTAATGTAAAGCATTAAA
ATATATACAATAGTTACAATAGTTACAATGTTTGAAATCAAAACGATCGT
TTCATTCCTTCTTGAAATTCTTTTCCAATTCAAAATGGGTGGTTTGATTT
GAATAATGTTGGCGTTGTTTGATTAAATGACCGGTAGACGAGGATAAATC
GATTTCTTCGCTTGATGAAGGGATGTCGCTGTTACCGAATACTGGAAGAT
AAATCAATAAAGAAATCGAAAAGAGTAAATTTTGctttaagtttttttaa
taaataaaattttaaaatgttagTGTTAAATCTAATGTATCTTTTCTAGA
TTTTTATTGCGAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00053610-protein

>TCONS_00053610-protein ID=TCONS_00053610-protein|Name=TCONS_00053610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MEGSSCCNKYFWFEVLILFVSLYFLINYIVDHWISTKVKQNVLVTGCDSG
FGLQTALVLSESNCKVFAGCLTQDGVKQLENDARFQGMAFIMDVTKDEDV
QNTKKIIEENGGIDGLVNNAGILIHGLIEWQSIELMKKTFEVNYWGLVRV
TKVILPLLKKSRGRIVNLTSIGGRLTPPYTAPYYCSKYAAEAFSDSLRLE
VKPWGISVHIIEPSYYKTAITNEETVRRNWQKLWNEQPDEIQNEIDEKTF
HEFVTAFYKQISIGSENIIEVALVIKHALLAKFPRRRYITGVNCGLAAFA
THLPTVLGDFFMALSVPLLRPIKTPKKTN
Run BLAST on NCBI

transcript from alignment at scaffold_233:1367464..1375548+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053610 ID=TCONS_00053610|Name=TCONS_00053610|organism=Clytia hemisphaerica|type=transcript|length=8085bp|location=Sequence derived from alignment at scaffold_233:1367464..1375548+ (Clytia hemisphaerica)
gtttataaaagaaatttgatgCCATCAGTACTACATCAGCTATATAACCT
TTgcataaaacaaaaaagagaTCTAGAAAATAAACATGGAGGGTAGTTCA
TGctgcaataaatatttttggtttgaaGTTCTCATTCTGTTTGTCTCGTT
ATATTTTCTGATAAATTATATTGTTGACCATTGGATTTCAACAAAAGTTA
AACAAAATGTTCTGGTGACAGGCTGCGATTCAGGTTTTGGTTTGCAAACA
GCTTTAGTATTAAGTGaatctaattgtaaagtttttgctggttgcttaac
ccaagatggTGTTAAACAACTTGAGAATGACGCAAGGTTTCAAGGGATGG
CTTTTATCATGGATGTGACCAAAGATGAAGATGTTCAAAATACAAAGAAG
ATTATCGAAGAAAATGGTGGTAGGCTTTGTTGGGTGTTTCTACCTACTTA
TAATTCGGCATTTAAGAGATTTCCATGCCCCATGAGTCATGGCTTAAAAA
GGATGAAGCCTGAGAAATCCGAGttaaaaacccgagttatgagAACCCGA
GTTGTGAAAACCTGAGTTAGGATGCaccttaatttttcgagttaatttta
aatatttgagtTTTATTATAACTCCTTCGTTTAAGGCATACCTTCGAACT
TTCATTGAATCCAGCGAGTTCCGATCCATTGTGTGAGTTAGGGAGACTCA
CTTGTgtttcttttaactttttaggAATTGATGGTCTGGTAAACAACGCT
GGAATTCTTATCCATGGTTTAATCGAATGGCAATCTATCGAATTAATGAA
GAAAACGTTCGAAGTGAATTATTGGGGGCTTGTTCGTGTTACCAAAGTCA
TTCTACCATTATTGAAAAAGTCACGTGGTCGTATCGTCAATCTGACTAGT
ATAGGAGGTACAATATGAgagttcataatttttttattagaacagcTTTA
TAACAACAATGAGGCTCAATCATCTCAAAAAATCAGAACAATATGTAAAG
AACAAAGAAAGAATTGCTGAAACTTACATAGATAAAGGatcaaataaacc
agctgcgctggaagctccggcttaagagattaaaagatgtgaaagatgag
cttgttgagttagttgtttTAGaatgttgcccacaaactactaatcagaa
cagatcagaaatcaaagtaataattctattgcagagcgagtatgagaaat
aatcttaacaaataaataaaccagctggaagtttagctcttctaagtgat
tacacatgcactttcTTGCCTAAAGAACCAACCCCACCCCCGCAtactca
tcctcgactaaaaagttcaaaattggagctaaaggatataaacatttaga
agtgaaTATTTCCAAGCTCTTATActgcaaatttatttttttctaaactt
gccaatagcgaagccatgatgcgccgttgatttgattgtccggataaaat
tttggggagaaaaatagcctaaattagaggccacgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNaattacgacaaagtccaaaaacg
gtcattttcagccataaaactgtgaaaatttctccattcttgttcaaatt
tacacaggaattgtgtcttagtatcctttattgaattctcatagtgatat
gtttctaAAAAgtatgtgtcgggtttgaagaatcaaaaggaacggtcgcc
agtcaacaatgatgaatacaaaacaagatcattttcagccataaacataa
caccacaaaaactactcagatcgttttcaaattttcactgtaatgttgta
attttagtattctcttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTAAGTAGAGTT
TTCCTACGTTCAAAAGGTTTTGAACAGAAGaaaaagtcacgtaagaccct
cttaatcaattaaaactctACGTAAAGATACGATTTTACGTGCATGTAAA
AAAAGCTGCACTTCGGTAGGTCACTTTACCTTAATATCCTCCAGGCAACC
CGAGACTTTACAGGCCCTGAATGTATAAGAAATACAATCCTTCCAATCTC
TCACACACACCAGACACCCACGTCGAGACAATCCTCGCACCTTAAACCTA
TGGGCATTATTAGCGGACTCAAACAACCTTGGATTAGCAAATATTAATAT
CTTGATATATGTCagtcaggaagaaaagacacttttttattctgctactg
gcagtttcattcCACTTTGGTGACAATATTCATACATGAATcctcccagc
tgacacacaacgttatttcaacgtttatctaacgttcacaacgtccatat
aacgttagatgaacgttgaaacaacgttgtgtgtcagctgggctCACGTT
TATCATTTGGTTTTTAGGTAGACTCACGCCACCGTATACAGCTCCTTACT
ATTGTTCCAAATATGCAGCCGAAGCATTTTCTGATAGCTTACGTCTTGAA
GTTAAACCTTGGGGTATAAGTGTTCACATTATTGAACCATCCTATTATAA
AACTGCAATCACAAATGAAGAGACTGTTCGACGTAATTGGCAGAAACTTT
GGAATGAACAACCTGATGAAatccaaaatgaaattgatgaGAAAACTTTC
CACGAATGTAAGTTAGAGTcgactctctttaattcgatattAAAAGGAAt
ccaaattagagaaagattcgaattacagaaattattttatatcattcTCC
AGTTGAAGGGACcgatgttttagttcgaattagaaaaagattcgaattac
agaagcACGAATGTTTATCCGTAAcctattacatgttttttttttataag
caagtgtatgccccttggtcaggctcgagtatgtttaagctttcaaagca
tccagacatAGAATATGCTTATtgtatgcttaagaattattatgcttttg
attcacccaaccaaattttttagtaaaatctttaaaattttgttaatatt
cgattcaaaaagcatttaaatttttgagcagtggaatgtggctagccgtg
gaatgtatttttttacttgaccacttgcaaacctttttgaataGAAAGAG
ATTGGCTACTTGAAAAATATCCCAGGCTAGtgtatatgcttatgttatgc
ttcatgcttaggaaatctgcaaatctgagccttcatatgcttataagcgt
tatgcttataaaaaaaaaacatgtatacttTATCGGGATCATGTTCAGTT
TACGGTGCTCATGGTCAGCAAATTGTGGACCAGTGGGTTTCACTAGTCCA
GTTGTAATCAATATCTGTAATTTTCTCGTGttcatttctttaaagatttt
gatatatgaaatatttatcacaagtcacaagtttctattcgatccataaa
attctcataaaaaaacaaagtattaatttacagttttttgaaaaaatact
atctaCATTGAAGGCGTatcgagataccctgcaaaatttatggacgagag
ctgtttttacgacactgtaatatatttgtctttgttttttcaaaagataa
tgaatctgtcttaaacgtctgcactccctcgtAAATTTTTCAGGGTATCT
CGCTTCGTCTATGAATTAAACAAGGCTAAAAGAGTTTCGACTTTCTAACA
AACGTCTGGATAATAGCATATATGCAGATGGTCTTTGCGGAAAGACTAAC
TGGAACAAAACGCCATTAAAGCTCCATACAATAgacgtattcaaacaatt
tctatagtgatcatatcccttgagacattaaatgaattttgtatgaatag
aaagtactagtagttgtaataaaatctactgggagttaatcaccatagca
ataatttcaaaacgaggcaagtgatgttcgtgacgtaattcatgaaaagg
tctatGGTACTTAAAAGCTTTTTGAAGGATATtttaaccattgagtttca
agcccgaagagctagaggcgaaactcctggatgggaaatgaaaccactta
tttcccatccagaacgcccacgcgtagtttttacacaaacgctggattga
aactaaaaccTATCACTAGAtttcctccaaaacaaaggaaccgctagata
caatccgtcgtcacgATTACGGCGcattctatgcgcgttttggacgGGAG
attaagtggcttcaatttcgcttgcctgagaagggttaaagcttcgcctc
tagcccttcggacttgaaactcaatgattttAACATCCAGGCTGGTAAAT
TAATCCCATAGAAATAACACTACCTATTATAAatgttctttgttttcttt
tcttttgacagTTGTTACTGCATTTTACAAGCAAATAAGTATCGGTTCAG
AAAACATCATTGAAGTTGCATTGGTGATTAAGCATGCATTACTGGCAAAG
TTTCCGAGGCGTCGATACATCACTGGTGTTAATTGTGGACTAGCAGCTTT
CGCAACCCATTTACCGACTGTACTTGGAGACTTCTTTATGGCATTGAGCG
TACCTCTTTTACGTCCCATCAAAACACCAAAGAAAACAAACTGAACGTGG
TTACCATCGTAACAACCAACCAATACATCAGTCGTGcaataattcatgta
aaattTACACTAGTAATATTACATCATCTTTAATcaactttaatgggatt
aattatcgcggggattaaatttcgcggatttggttGTGATCTGCGAAAAT
AAGAACCAGTGGTAGTTTAAAAACGTCTTATCTTTTCAAAAGTCCACCTT
TAACAtgtttaccccccccccccatcaaagaagcgctaataatgcgtatt
tcacaGCCAACATGCATAGTCTGGCagtaaaatagcaaaaatagtaCTCA
CAAAATCGTGAGAATTAtctcaatattttcaaatctcACAATAGAGCCAT
CCACGAAATTACGTctccgcgaaatcttaaaatttcccGCGAAAACTAAC
CCCATTAATGTAAGGCTTTATTGGTGTaatgaataaattttgaaaggcTT
AATTTTTACCATATCTAGAAATATGTAGAATTTTTCCTTGTAGTTTTAAA
ATTAATGTAAAGCATTAAAATATATACAATAGTTACAATAGTTACAATGT
TTGAAATCAAAACGATCGTTTCATTCCTTCTTGAAATTCTTTTCCAATTC
AAAATGGGTGGTTTGATTTGAATAATGTTGGCGTTGTTTGATTAAATGAC
CGGTAGACGAGGATAAATCGATTTCTTCGCTTGATGAAGGGATGTCGCTG
TTACCGAATACTGGAAGATAAATCAATAAAGAAATCGAAAAGAGTAAATT
TTGctttaagtttttttaataaataaaattttaaaatgttagTGTTAAAT
CTAATGTATCTTTTCTAGATTTTTATTGCGAAAAG

Coding sequence (CDS) from alignment at scaffold_233:1367464..1375548+

>TCONS_00053610 ID=TCONS_00053610|Name=TCONS_00053610|organism=Clytia hemisphaerica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_233:1367464..1375548+ (Clytia hemisphaerica)
ATGGAGGGTAGTTCATGctgcaataaatatttttggtttgaaGTTCTCAT
TCTGTTTGTCTCGTTATATTTTCTGATAAATTATATTGTTGACCATTGGA
TTTCAACAAAAGTTAAACAAAATGTTCTGGTGACAGGCTGCGATTCAGGT
TTTGGTTTGCAAACAGCTTTAGTATTAAGTGaatctaattgtaaagtttt
tgctggttgcttaacccaagatggTGTTAAACAACTTGAGAATGACGCAA
GGTTTCAAGGGATGGCTTTTATCATGGATGTGACCAAAGATGAAGATGTT
CAAAATACAAAGAAGATTATCGAAGAAAATGGTGgAATTGATGGTCTGGT
AAACAACGCTGGAATTCTTATCCATGGTTTAATCGAATGGCAATCTATCG
AATTAATGAAGAAAACGTTCGAAGTGAATTATTGGGGGCTTGTTCGTGTT
ACCAAAGTCATTCTACCATTATTGAAAAAGTCACGTGGTCGTATCGTCAA
TCTGACTAGTATAGGAGGTAGACTCACGCCACCGTATACAGCTCCTTACT
ATTGTTCCAAATATGCAGCCGAAGCATTTTCTGATAGCTTACGTCTTGAA
GTTAAACCTTGGGGTATAAGTGTTCACATTATTGAACCATCCTATTATAA
AACTGCAATCACAAATGAAGAGACTGTTCGACGTAATTGGCAGAAACTTT
GGAATGAACAACCTGATGAAatccaaaatgaaattgatgaGAAAACTTTC
CACGAATTTGTTACTGCATTTTACAAGCAAATAAGTATCGGTTCAGAAAA
CATCATTGAAGTTGCATTGGTGATTAAGCATGCATTACTGGCAAAGTTTC
CGAGGCGTCGATACATCACTGGTGTTAATTGTGGACTAGCAGCTTTCGCA
ACCCATTTACCGACTGTACTTGGAGACTTCTTTATGGCATTGAGCGTACC
TCTTTTACGTCCCATCAAAACACCAAAGAAAACAAACTGAATGGAGGGTA
GTTCATGctgcaataaatatttttggtttgaaGTTCTCATTCTGTTTGTC
TCGTTATATTTTCTGATAAATTATATTGTTGACCATTGGATTTCAACAAA
AGTTAAACAAAATGTTCTGGTGACAGGCTGCGATTCAGGTTTTGGTTTGC
AAACAGCTTTAGTATTAAGTGaatctaattgtaaagtttttgctggttgc
ttaacccaagatggTGTTAAACAACTTGAGAATGACGCAAGGTTTCAAGG
GATGGCTTTTATCATGGATGTGACCAAAGATGAAGATGTTCAAAATACAA
AGAAGATTATCGAAGAAAATGGTGgAATTGATGGTCTGGTAAACAACGCT
GGAATTCTTATCCATGGTTTAATCGAATGGCAATCTATCGAATTAATGAA
GAAAACGTTCGAAGTGAATTATTGGGGGCTTGTTCGTGTTACCAAAGTCA
TTCTACCATTATTGAAAAAGTCACGTGGTCGTATCGTCAATCTGACTAGT
ATAGGAGGTAGACTCACGCCACCGTATACAGCTCCTTACTATTGTTCCAA
ATATGCAGCCGAAGCATTTTCTGATAGCTTACGTCTTGAAGTTAAACCTT
GGGGTATAAGTGTTCACATTATTGAACCATCCTATTATAAAACTGCAATC
ACAAATGAAGAGACTGTTCGACGTAATTGGCAGAAACTTTGGAATGAACA
ACCTGATGAAatccaaaatgaaattgatgaGAAAACTTTCCACGAATTTG
TTACTGCATTTTACAAGCAAATAAGTATCGGTTCAGAAAACATCATTGAA
GTTGCATTGGTGATTAAGCATGCATTACTGGCAAAGTTTCCGAGGCGTCG
ATACATCACTGGTGTTAATTGTGGACTAGCAGCTTTCGCAACCCATTTAC
CGACTGTACTTGGAGACTTCTTTATGGCATTGAGCGTACCTCTTTTACGT
CCCATCAAAACACCAAAGAAAACAAACTGAATGGAGGGTAGTTCATGctg
caataaatatttttggtttgaaGTTCTCATTCTGTTTGTCTCGTTATATT
TTCTGATAAATTATATTGTTGACCATTGGATTTCAACAAAAGTTAAACAA
AATGTTCTGGTGACAGGCTGCGATTCAGGTTTTGGTTTGCAAACAGCTTT
AGTATTAAGTGaatctaattgtaaagtttttgctggttgcttaacccaag
atggTGTTAAACAACTTGAGAATGACGCAAGGTTTCAAGGGATGGCTTTT
ATCATGGATGTGACCAAAGATGAAGATGTTCAAAATACAAAGAAGATTAT
CGAAGAAAATGGTGgAATTGATGGTCTGGTAAACAACGCTGGAATTCTTA
TCCATGGTTTAATCGAATGGCAATCTATCGAATTAATGAAGAAAACGTTC
GAAGTGAATTATTGGGGGCTTGTTCGTGTTACCAAAGTCATTCTACCATT
ATTGAAAAAGTCACGTGGTCGTATCGTCAATCTGACTAGTATAGGAGGTA
GACTCACGCCACCGTATACAGCTCCTTACTATTGTTCCAAATATGCAGCC
GAAGCATTTTCTGATAGCTTACGTCTTGAAGTTAAACCTTGGGGTATAAG
TGTTCACATTATTGAACCATCCTATTATAAAACTGCAATCACAAATGAAG
AGACTGTTCGACGTAATTGGCAGAAACTTTGGAATGAACAACCTGATGAA
atccaaaatgaaattgatgaGAAAACTTTCCACGAATTTGTTACTGCATT
TTACAAGCAAATAAGTATCGGTTCAGAAAACATCATTGAAGTTGCATTGG
TGATTAAGCATGCATTACTGGCAAAGTTTCCGAGGCGTCGATACATCACT
GGTGTTAATTGTGGACTAGCAGCTTTCGCAACCCATTTACCGACTGTACT
TGGAGACTTCTTTATGGCATTGAGCGTACCTCTTTTACGTCCCATCAAAA
CACCAAAGAAAACAAACTGAATGGAGGGTAGTTCATGctgcaataaatat
ttttggtttgaaGTTCTCATTCTGTTTGTCTCGTTATATTTTCTGATAAA
TTATATTGTTGACCATTGGATTTCAACAAAAGTTAAACAAAATGTTCTGG
TGACAGGCTGCGATTCAGGTTTTGGTTTGCAAACAGCTTTAGTATTAAGT
GaatctaattgtaaagtttttgctggttgcttaacccaagatggTGTTAA
ACAACTTGAGAATGACGCAAGGTTTCAAGGGATGGCTTTTATCATGGATG
TGACCAAAGATGAAGATGTTCAAAATACAAAGAAGATTATCGAAGAAAAT
GGTGgAATTGATGGTCTGGTAAACAACGCTGGAATTCTTATCCATGGTTT
AATCGAATGGCAATCTATCGAATTAATGAAGAAAACGTTCGAAGTGAATT
ATTGGGGGCTTGTTCGTGTTACCAAAGTCATTCTACCATTATTGAAAAAG
TCACGTGGTCGTATCGTCAATCTGACTAGTATAGGAGGTAGACTCACGCC
ACCGTATACAGCTCCTTACTATTGTTCCAAATATGCAGCCGAAGCATTTT
CTGATAGCTTACGTCTTGAAGTTAAACCTTGGGGTATAAGTGTTCACATT
ATTGAACCATCCTATTATAAAACTGCAATCACAAATGAAGAGACTGTTCG
ACGTAATTGGCAGAAACTTTGGAATGAACAACCTGATGAAatccaaaatg
aaattgatgaGAAAACTTTCCACGAATTTGTTACTGCATTTTACAAGCAA
ATAAGTATCGGTTCAGAAAACATCATTGAAGTTGCATTGGTGATTAAGCA
TGCATTACTGGCAAAGTTTCCGAGGCGTCGATACATCACTGGTGTTAATT
GTGGACTAGCAGCTTTCGCAACCCATTTACCGACTGTACTTGGAGACTTC
TTTATGGCATTGAGCGTACCTCTTTTACGTCCCATCAAAACACCAAAGAA
AACAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033826XLOC_033826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053610-exon-scaffold_233-1491911889:1367464..1367882TCONS_00053610-exon-scaffold_233-1491911889:1367464..1367882Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1510915933:1367464..1367882TCONS_00053610-exon-scaffold_233-1510915933:1367464..1367882Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1575043694:1367464..1367882TCONS_00053610-exon-scaffold_233-1575043694:1367464..1367882Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1491911889:1368188..1368370TCONS_00053610-exon-scaffold_233-1491911889:1368188..1368370Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1510915933:1368188..1368370TCONS_00053610-exon-scaffold_233-1510915933:1368188..1368370Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1575043694:1368188..1368370TCONS_00053610-exon-scaffold_233-1575043694:1368188..1368370Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1491911889:1372581..1372820TCONS_00053610-exon-scaffold_233-1491911889:1372581..1372820Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1510915933:1372581..1372820TCONS_00053610-exon-scaffold_233-1510915933:1372581..1372820Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1575043694:1372581..1372820TCONS_00053610-exon-scaffold_233-1575043694:1372581..1372820Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1491911889:1374475..1375548TCONS_00053610-exon-scaffold_233-1491911889:1374475..1375548Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1510915933:1374475..1375548TCONS_00053610-exon-scaffold_233-1510915933:1374475..1375548Clytia hemisphaericaexon
TCONS_00053610-exon-scaffold_233-1575043694:1374475..1375548TCONS_00053610-exon-scaffold_233-1575043694:1374475..1375548Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053610-proteinTCONS_00053610-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1367464..1375548 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.343835	0.528781	0.319218	0.311867	0.092451	0	4.19199	3.9683	6.51284	2.92189	4.83766	7.53159	7.37549	6.46857	11.3583	12.6466	2.01002	3.59338	2.29313	1.61527	6.48254	6.99362	5.89459	4.96719	1.6957	1.71792	1.53475	1.55004	26.8297	19.1356
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
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BLAST of TCONS_00053610 vs. Swiss-Prot (Human)
Match: H17B6 (17-beta-hydroxysteroid dehydrogenase type 6 OS=Homo sapiens GN=HSD17B6 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.482e-49
Identity = 106/308 (34.42%), Postives = 166/308 (53.90%), Query Frame = 2 
Query:  131 LILFVSLYFLINYIVDHWISTKVKQN-VLVTGCDSGFGLQTALVLSESNCKVFAGCLTQDGVKQLENDARFQGMAFIMDVTKDEDVQNTKKIIEE---NGGIDGLVNNAGILIH-GLIEWQSIELMKKTFEVNYWGLVRVTKVILPLLKKSRGRIVNLTSIGGRLTPPYTAPYYCSKYAAEAFSDSLRLEVKPWGISVHIIEPSYYKTAITNEETVRRNWQKLWNEQPDEIQNEIDEKTFHEFVTAFYKQISIGSENIIEVALVIKHALLAKFPRRRYITGVNCGLAAFA-THLPTVLGDFFMALSVP 1036
            L  FV LY+L+++  +  + + ++   V +TGCDSGFG   A  L     +V A CLT+ G +QL      +     +DVTK E +    + ++E   + G+ GLVNNAGIL    L EW + E      +VN  G+++VT  +LPL++++RGRIVN++SI GR+   +   Y  SKY  EAFSD LR E++ +G+ + I+EP Y++T +TN        ++ W E P  I+    ++ F        + +   S N+  V   ++HAL +  PR RY  G +        ++LPT L D+ +  S P
Sbjct:    5 LAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAACLTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPITLCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAF-FVGGYCVSKYGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMKQSWKEAPKHIKETYGQQYFDALYNIMKEGLLNCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYLPTSLADYILTRSWP 311
The following BLAST results are available for this feature:
BLAST of TCONS_00053610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H17B61.482e-4934.4217-beta-hydroxysteroid dehydrogenase type 6 OS=Hom... [more]
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