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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053611 ID=TCONS_00053611|Name=TCONS_00053611|organism=Clytia hemisphaerica|type=transcript|length=1118bp
GTtttaataaacaaaaacaaataaagtGGGTGGGATTTTGACAGCCAAAT
TTTCCCATTATAATCTTATCTTAATTCATATGTAGACCACAAAGTCGATG
GTTAGGAGTGGATTGATCACAGTGTCGGTTATATTTGGTGACACCTCTTT
GGTATTTTAAGATTTATTAACAGCGAAAATGATGGCTGACTATATGAATA
TTGCAATTCCAATTATGTTGGTTTGGTTTGCTATAAGTTGCAATGCTGaa
GTGTCAGAGGTGACGGTTTACAGACAACGTGTGCAAGATCTTGGTCTTCG
GACGGCAAGAAGTAGTGCATTGTTCACAGcttGTACAATCGGCGGCAAAC
GCTATCACAGTGGTGAAATCTTCATTGCTAGAAACTGTGAAAGAATGTGC
CAGTGTAGACGTACCCGTAAATTTCAAATCATCACATGTATGCCATTATG
TCCACGAATGAGACCAACAACATGTAGACAGGGTCTTGTGAGAGCTATTG
CACGATATGTTTACACTTTTCGCCCACTTTGTTACTGTCCAACAACCATG
TGCGTTCGAGATAGAACCTTCGTTCCCTAAAAATAATCAGACAAAGAAAT
CAATTGGCAAGTGATGAGCATTTCAGTTGAGATTGGAGTCGTGGATGGGC
AGATCGAAATTAGTAAATTAGCCTTAAACCNAGCAAGTGATGAGCATTTG
AGTTGAGATTGGACTCATGGATGGGCAGATCGAAAATAGTAAATTAGTCT
TAAACCACATCCTTGATCCTTGGGAAAAGTGAAATGGCGGTCCCAAAAAG
GACTCATGGTTATAAGCCTCTTCTGGATGACGTAATTGCAAAAGTTGAAA
GCTGGAATAAAACTCATTGAAATTAAGATAAGGAGTTATTTAGACCTGCT
GATGAACTCAAAGCTCACAAGAACATTTGATAGACTCAGTGAAGTGAAAC
CTTATAgaatatattttcataaatgttgtatgaattttcaaagatttgta
TTTATATCTAATTTTAATAACATAAAATTCACAACTAATATTTGATTCAA
TTATACCCTGAATTTCTTAGCTTTTCTTCTACATGCTATAAAAAGGGAAA
ATAAATATCAAGTTTCAA Run BLAST on NCBI protein sequence of TCONS_00053611-protein >TCONS_00053611-protein ID=TCONS_00053611-protein|Name=TCONS_00053611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MMADYMNIAIPIMLVWFAISCNAEVSEVTVYRQRVQDLGLRTARSSALFT
ACTIGGKRYHSGEIFIARNCERMCQCRRTRKFQIITCMPLCPRMRPTTCR
QGLVRAIARYVYTFRPLCYCPTTMCVRDRTFVP Run BLAST on NCBI transcript from alignment at scaffold_233:1418320..1421947+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053611 ID=TCONS_00053611|Name=TCONS_00053611|organism=Clytia hemisphaerica|type=transcript|length=3628bp|location=Sequence derived from alignment at scaffold_233:1418320..1421947+ (Clytia hemisphaerica)
GTtttaataaacaaaaacaaataaagtGGGTGGGATTTTGACAGCCAAAT
TTTCCCATTATAATCTTATCTTAATTCATATGTAGACCACAAAGTCGATG
GTTAGGAGTGGATTGATCACAGTGTCGGTTATATTTGGTGACACCTCTTT
GGTATTTTAAGATTTATTAACAGCGAAAATGATGGCTGACTATATGAATA
TTGCAATTCCAATTATGTTGGTTTGGTTTGCTATAAGTTGCAATGCTGGT
GAGTTTAACATCACAGTAGGTAGTAGTTTAACAGTCACAATTCACCGGGA
AAGGCGGCGGCTgatcttattttcttgtttaaATTTGCCTAGATTCTAAT
AAGCATAAGTTGCCTGGAATTGAAGTTAGTACTTTGAAATACCATCATTA
AGGTAAATTTGGACTAACTTCAGGCTATTCAGAACAAAAGAAGAGACTTT
TCCTTTGAACTCAGAATATtaaaaggcttaaaatgttAGGGGGACAAGGG
GTGTCAAATATGAATGACAGGGGAtgaaaaatacaacaaaatacttgaga
atattctttaaaaaacttccTTAAACCCGTCAGATTCTAGCTTAAATCGA
AATTAAGTAAATACCAAAACCTTACTGTAAAGGGTCAAGTTATAATAGCA
TTTGGGTTACTTCGATCAAACTTTGGGCCAACACCCTTCTCTTTTCCCTC
GTTGATGCAAGGGTTTCTAGGTATTTTTGAattacaatttaaaataaaat
cataaaatacctcatctttttttttgtagaaGTGTCAGAGGTGACGGTTT
ACAGACAACGTGTGCAAGATCTTGGTCTTCGGACGGCAAGAAGTAGTGCA
TTGTTCACAGGTGGGTACAATGTTGTCTATGTTCTTGAACTGCTTTGTTC
TAAAACTGTGAAAATACATAAGTATAATTAAAGTTGGAGCACAATATTCA
TAGGTTTTGTAATTGAACTTTTCACactatacagtgtgtcccaaaaaagt
gGACACATTTTTATGTAAAGTAAAATCTTCATTTATGCCAAATTTCTGAC
TTATATACTTGGTATTTCAATCTCGAAAACTTATTCAATCATATTGGTga
ttgaatatctattgattggACAGAGAATTCTAATCTTAcagtattttaat
tattttaagcCAAGTTTACATAATAAAGTTTGAGGATTGTAATTTACATA
gaaatttgtccgcttttttgggacacactgtagaCTTGAAGACTTCTGAC
TTAAGTATTCATGAGAGCGAAAATTGAATTTACAAACGTCTCAGTTGAAG
GCGAAATAAGTAATGCAAGTATCTTTTTACTTACAATATCTGTTCAACCT
CAAAGAAATGACTCAGCTCTTATTTAATCCTGCTCGTTATTAGGGACTCT
TAATTACTTCAATACTGTGGGAAACTGAAATTTATTCAGCTTCAAATACA
AATTTTTCGACTTTGGCTTAATCAAAGTAGGTCATCTTTGCGTTCACTGA
AAAGCTATTTTCACGATCTACATTTTGTAAATTACGCGCTCAATCAAATT
CAACGGTAGCCGAAAGAAAAGTTCATAAATGAAGGGCGTTCAGCTGAAAA
GTATTGAATTACTTAAATATTGAATTACAGTAGTCTCGCGGTTATTCGAA
ACTGCACTTATTCGAAAAGTTCGGTTGTTCCTCCTTGGATCTGCTTACCT
AACTCTCGGTTATTCGAACttcatttattagaattttcAATTGTTCGAAG
CAAATTCTATTCCCCTTGGGGCCAATTGCAGGCTGAATCACCCTcagtta
tagtctaagacaaatcactaactaagaaataagcccaaagccgaagaaaa
ttctcAAACGggctttttgctgaaaagggtttacagccggtagagtttac
cagtcttcgaaactctcccgccgattttttttccgtataccgccataacg
ccataccgccattttcccgcctttactatcaatGAAACGGACGACAACAT
CGTCTAGCAATTCCTTCAAAAATCCCATTCTCCTTCGGTCTACTCTCATT
ACAAAGTTGAATGTAAactgtcaaaaaatatttttgtttctaatCAGATT
TGTCGAAGAAAATTCTAAATCTAGTTTAGCCCTTAAACGGGTGTcctcta
aaaataaaaacaacccGATGTTTTCACAATAAGTGAAACCCAACTCATAA
GAACTAGTACTGCGCTTGAAAAAATATAGACATTTAAAGATCTTTAGGAA
CGTAATCTCAACACATTAGATACTGTTTTAATTTAACTTCTCTTATtgga
atctttctctaattcgattgtTCCACGGTTCAGAAATATATTCAATAAAA
GATCGAAATATTCAAGAAATGATGGCAAAGATAGACCAGAAAAATTTAGT
TTATTAAAAACCTgaattttaacctttttatgccTGTTTTTAGATTAATT
ACTTTAGGCTGCTAaggcgaaaataagaaaaatgtagtgtttccagaATG
CAGGTGAAggaaaaacagcctttttaataattttttggttgctatttttt
ataacttaagatcattgaaatagaactttaaagataacttttatgtacaa
acagtatggagtaagccctgaatatcaatgtatcaactactaacgaacaa
aacttgatttacaagcgggaatatctaaccaaacgatgtttgatagcttg
aacggtcaacttgagtttctttatgatgaaccatatagatgaacccattg
TCTACGTccgggtcagaaaatttttttttttccggaaaaactacattttt
ttattttcacctaaccagaaatctttattttattttcagcttGTACAATC
GGCGGCAAACGCTATCACAGTGGTGAAATCTTCATTGCTAGAAACTGTGA
AAGAATGTGCCAGTGTAGACGTACCCGTAAATTTCAAATCATCACATGTA
TGCCATTATGTCCACGAATGAGACCAACAACATGTAGACAGGGTCTTGTG
AGAGCTATTGCACGATATGTTTACACTTTTCGCCCACTTTGTTACTGTCC
AACAACCATGTGCGTTCGAGATAGAACCTTCGTTCCCTAAAAATAATCAG
ACAAAGAAATCAATTGGCAAGTGATGAGCATTTCAGTTGAGATTGGAGTC
GTGGATGGGCAGATCGAAATTAGTAAATTAGCCTTAAACCNAGCAAGTGA
TGAGCATTTGAGTTGAGATTGGACTCATGGATGGGCAGATCGAAAATAGT
AAATTAGTCTTAAACCACATCCTTGATCCTTGGGAAAAGTGAAATGGCGG
TCCCAAAAAGGACTCATGGTTATAAGCCTCTTCTGGATGACGTAATTGCA
AAAGTTGAAAGCTGGAATAAAACTCATTGAAATTAAGATAAGGAGTTATT
TAGACCTGCTGATGAACTCAAAGCTCACAAGAACATTTGATAGACTCAGT
GAAGTGAAACCTTATAgaatatattttcataaatgttgtatgaattttca
aagatttgtaTTTATATCTAATTTTAATAACATAAAATTCACAACTAATA
TTTGATTCAATTATACCCTGAATTTCTTAGCTTTTCTTCTACATGCTATA
AAAAGGGAAAATAAATATCAAGTTTCAA Coding sequence (CDS) from alignment at scaffold_233:1418320..1421947+ >TCONS_00053611 ID=TCONS_00053611|Name=TCONS_00053611|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_233:1418320..1421947+ (Clytia hemisphaerica)
ATGATGGCTGACTATATGAATATTGCAATTCCAATTATGTTGGTTTGGTT
TGCTATAAGTTGCAATGCTGaaGTGTCAGAGGTGACGGTTTACAGACAAC
GTGTGCAAGATCTTGGTCTTCGGACGGCAAGAAGTAGTGCATTGTTCACA
GcttGTACAATCGGCGGCAAACGCTATCACAGTGGTGAAATCTTCATTGC
TAGAAACTGTGAAAGAATGTGCCAGTGTAGACGTACCCGTAAATTTCAAA
TCATCACATGTATGCCATTATGTCCACGAATGAGACCAACAACATGTAGA
CAGGGTCTTGTGAGAGCTATTGCACGATATGTTTACACTTTTCGCCCACT
TTGTTACTGTCCAACAACCATGTGCGTTCGAGATAGAACCTTCGTTCCCT
AAATGATGGCTGACTATATGAATATTGCAATTCCAATTATGTTGGTTTGG
TTTGCTATAAGTTGCAATGCTGaaGTGTCAGAGGTGACGGTTTACAGACA
ACGTGTGCAAGATCTTGGTCTTCGGACGGCAAGAAGTAGTGCATTGTTCA
CAGcttGTACAATCGGCGGCAAACGCTATCACAGTGGTGAAATCTTCATT
GCTAGAAACTGTGAAAGAATGTGCCAGTGTAGACGTACCCGTAAATTTCA
AATCATCACATGTATGCCATTATGTCCACGAATGAGACCAACAACATGTA
GACAGGGTCTTGTGAGAGCTATTGCACGATATGTTTACACTTTTCGCCCA
CTTTGTTACTGTCCAACAACCATGTGCGTTCGAGATAGAACCTTCGTTCC
CTAAATGATGGCTGACTATATGAATATTGCAATTCCAATTATGTTGGTTT
GGTTTGCTATAAGTTGCAATGCTGaaGTGTCAGAGGTGACGGTTTACAGA
CAACGTGTGCAAGATCTTGGTCTTCGGACGGCAAGAAGTAGTGCATTGTT
CACAGcttGTACAATCGGCGGCAAACGCTATCACAGTGGTGAAATCTTCA
TTGCTAGAAACTGTGAAAGAATGTGCCAGTGTAGACGTACCCGTAAATTT
CAAATCATCACATGTATGCCATTATGTCCACGAATGAGACCAACAACATG
TAGACAGGGTCTTGTGAGAGCTATTGCACGATATGTTTACACTTTTCGCC
CACTTTGTTACTGTCCAACAACCATGTGCGTTCGAGATAGAACCTTCGTT
CCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053611-exon-scaffold_233-1491911889:1418320..1418567 | TCONS_00053611-exon-scaffold_233-1491911889:1418320..1418567 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1510915933:1418320..1418567 | TCONS_00053611-exon-scaffold_233-1510915933:1418320..1418567 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1575043694:1418320..1418567 | TCONS_00053611-exon-scaffold_233-1575043694:1418320..1418567 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1491911889:1419099..1419179 | TCONS_00053611-exon-scaffold_233-1491911889:1419099..1419179 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1510915933:1419099..1419179 | TCONS_00053611-exon-scaffold_233-1510915933:1419099..1419179 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1575043694:1419099..1419179 | TCONS_00053611-exon-scaffold_233-1575043694:1419099..1419179 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1491911889:1421159..1421947 | TCONS_00053611-exon-scaffold_233-1491911889:1421159..1421947 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1510915933:1421159..1421947 | TCONS_00053611-exon-scaffold_233-1510915933:1421159..1421947 | Clytia hemisphaerica | exon |
| TCONS_00053611-exon-scaffold_233-1575043694:1421159..1421947 | TCONS_00053611-exon-scaffold_233-1575043694:1421159..1421947 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1418320..1421947 + |
Blast
The following BLAST results are available for this feature:
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