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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053612 ID=TCONS_00053612|Name=TCONS_00053612|organism=Clytia hemisphaerica|type=transcript|length=1345bp
CGACAAAcgaacaaacaaaaaaacaaaaggtATTGATCGAGTTAGAAAGT
GGCATTCGAACATTCCGTTTTGTTGGGAGTGTATTACTTAAACTTTATTG
TGAAAGCGAATTTGGAATTTCAAAACCATGAGCAACAATTCGAATTTCAA
CAGCAATGCTGTCACAGCCACCAATCTGCAGTCAATATCTTcccaacaac
agcaacaacaacaacgatcGTACTGGCAGCAACATCGCCAACGTCTTAGT
CATCCTCCAATTTTGGAAACAAACACATATTCCGCTTCGTCACCTTCTTT
CAATTCAATATATCCAATCACTACATGTCGATACGAATACACAACCAATT
TCGTTCCAGCTATACCACAATCACTGACAGCTCTGGCAAGTTCAACACCA
CCATCAGGTCTTGGACATTCAGTATCATATCTAAACACACCAGCTAGCTC
AGACCCTTTAGATTATAACAACACTTTACAAAATAATCTGACGTCTTCAG
GATCAGTTATAAACTCTCAGAACACTAAATTCCTATCATGTCAATATTCA
GGATCAACACTACAAGGTAAACAGATGGAATCTGAAGATCTTCATTTGAC
AAGTGGTGGTGTATATCAAAATGCATCGCAATCAAGAGACATTAACAATT
CACCATCATCTTCGTCAACAATATCCCATTATTCATATAATGACACAAAT
AACAACACTCAAACACGTATTAAAGACACTGATAAGAATACAGATACTCA
AGGACAATCTTCATCATCAACAACTCAGAAAAATAAGATGCCACCTCTAG
ATATGAAGGAAGTGATAGAAACTCTGGCAACACTGAAGAATAATGGACAA
ATAAAGAAGGCAGATGGTGAAGAtagtgacaaaaataaaaataaagAAAA
ACCAAAAGACGAGAAACCACCAAAATCATGGCAATCAGCCAAAGTTCGAA
AACGATCACGAACCACTTACACACGAGCGCAACAATTAGAACTGGAAAAA
GAatatcgatataatcgatataTATCGAGAGCACGTCGAATCGAATTAGC
TAAAAATTTGACACTAACagaaaaacatatcaaaatatgGTATCAGAATC
GAAGAATGAAGGAGAAAAGAGACGAGGAAGATATTATGAGAGGTACAACT
GTTTTGGATCCTCGATCTTcttattattaacttattttttattttatttt
tcaaactttttgccTCGCTTCGTTTTTAGTTATTTCTTGTACATATTCTT
GTAGTTTGTTAGATAGGCTCTTTTATAAggacaaaaactaaaaatgttaa
aaatttatttgatatcGAATTTTTGGCAGGGAATTGATAAAAAAC Run BLAST on NCBI protein sequence of putative Pdx/Xlox homeodomain transcription factor >TCONS_00053612-protein ID=TCONS_00053612-protein|Name=putative Pdx/Xlox homeodomain transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MSNNSNFNSNAVTATNLQSISSQQQQQQQRSYWQQHRQRLSHPPILETNT
YSASSPSFNSIYPITTCRYEYTTNFVPAIPQSLTALASSTPPSGLGHSVS
YLNTPASSDPLDYNNTLQNNLTSSGSVINSQNTKFLSCQYSGSTLQGKQM
ESEDLHLTSGGVYQNASQSRDINNSPSSSSTISHYSYNDTNNNTQTRIKD
TDKNTDTQGQSSSSTTQKNKMPPLDMKEVIETLATLKNNGQIKKADGEDS
DKNKNKEKPKDEKPPKSWQSAKVRKRSRTTYTRAQQLELEKEYRYNRYIS
RARRIELAKNLTLTEKHIKIWYQNRRMKEKRDEEDIMRGTTVLDPRSSYY Run BLAST on NCBI transcript from alignment at scaffold_233:1430419..1435596+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053612 ID=TCONS_00053612|Name=TCONS_00053612|organism=Clytia hemisphaerica|type=transcript|length=5178bp|location=Sequence derived from alignment at scaffold_233:1430419..1435596+ (Clytia hemisphaerica)
CGACAAAcgaacaaacaaaaaaacaaaaggtATTGATCGAGTTAGAAAGT
GGCATTCGAACATTCCGTTTTGTTGGGAGTGTATTACTTAAACTTTATTG
TGAAAGCGAATTTGGAATTTCAAAACCATGAGCAACAATTCGAATTTCAA
CAGCAATGCTGTCACAGCCACCAATCTGCAGTCAATATCTTcccaacaac
agcaacaacaacaacgatcGTACTGGCAGCAACATCGCCAACGTCTTAGT
CATCCTCCAATTTTGGAAACAAACACATATTCCGCTTCGTCACCTTCTTT
CAATTCAATATATCCAATCACTACATGTCGATACGAATACACAACCAATT
TCGTTCCAGCTATACCACAATCACTGACAGCTCTGGCAAGTTCAACACCA
CCATCAGGTCTTGGACATTCAGTATCATATCTAAACACACCAGCTAGCTC
AGACCCTTTAGATTATAACAACACTTTACAAAATAATCTGACGTCTTCAG
GATCAGTTATAAACTCTCAGAACACTAAATTCCTATCATGTCAATATTCA
GGATCAACACTACAAGGTAAACAGATGGAATCTGAAGATCTTCATTTGAC
AAGTGGTGGTGTATATCAAAATGCATCGCAATCAAGAGACATTAACAATT
CACCATCATCTTCGTCAACAATATCCCATTATTCATATAATGACACAAAT
AACAACACTCAAACACGTATTAAAGACACTGATAAGAATACAGATACTCA
AGGACAATCTTCATCATCAACAACTCAGAAAAATAAGATGCCACCTCTAG
ATATGAAGGAAGTGATAGAAACTCTGGCAACACTGAAGAATAATGGACAA
ATAAAGAAGGCAGATGGTGAAGAtagtgacaaaaataaaaataaaggttA
GTTTTTTACCCTTTCGAATCCGAAACGCCAGGGTATATTTTTTGACCGAA
AAGAgctcttttggaaaaaatcaagaaacatcCCATTTAGCTCAAACTTA
TTCTGGCAAATTACCCaatcattagattttttttgataactgATTTTCAA
TTCGGAAAATACGCCGTAAGGCCATACGTTTGGAAAAGCAGATCCTACCA
CACCGAACACCTTGGTTAAATAAACTAAATGAGGCTATTTGTGCTACATT
TTGTAGAAAGAGTGAAAAGGGGCTTTCCaataaaactatttttcttttgc
ttttggaACACAGTATAATATTGCAAAAAGTGAACAAATTTCGAATTAAA
AATGGTTCTTCCTATAATTGGAGATTTTAAAGTAGTTTGACCAAGGGACC
AAGTTTACTATCAATCATAAAATCATTTGAAAGTTTCGCATCCTAGTTGC
AAATtaagatataattttttttcttcaatctaaAGTAGCAGGtacctaaa
aataaagtttccAGTTTGGTAAAAAGAGCTTACTGGAACATCATTTGATT
CTGGTCTGGAAAATatacacttaaaaaaaaaactaaactgtGTTTCTGGG
TAGAAGATGTTAAATTTTTGAGGACAGGAGTAGTGTTGTGGAGCTTTTGA
AAGGTCTATCTGAAGGGTTACATTAATCACACACCAAGCGTttgctcaaa
aaattaattctttttatGTATCTTGCcagttaaaaaaaatcagattttgt
tCAAAGACTTTGGAATTAATTACCTCAATTTTAAAGGTAGTTTTCTCTTA
GTTATCTGTGTATCTGGCAGACTATATATTAAAAGACAGTACAAATATTT
CATAAACAAATTATCatcaaagattttatcaaacGCGCATAAAATGTCGT
ATCTTGATCACTTATGATTTAGATGAACTTTCAAGTTTACCACTTACAAA
TCTAGTGACCCAAAGTCTAGGAAAAGTTTTGcgtatttttgcatattttt
gcaGACAAGAAATTGTCAAAAGGAACTATAGTGCTGGATTAAGTTTTCGA
AAATGGAATCATGCAATAACATGGTCACAGTCGGATTCTACGTGTTACTT
AAATCCTTTAGTAATCCGCTATTCCTCAAAATAAACCCAAAATTCATTcc
atcattttaattttttttataagcagagCAGGACTCAAAGCTTGCACTGT
AATAATAGACGCAAAATTTTCAGAGAAATATTCAAACCTAAAAATTATAC
AATTCAAAGTTTTACGTTCGCTGTAAGTCCTCTTAAGTTAAGCATGCTAA
GTTTGATTGTGCATGTTACGCTTGTCTAGGTGTAACAGTAAGTCTTCTAA
TTATAAAAATGAACAGGATTTTTAGGGAATTTAACTAAGGGAggtttaaa
aaaacattaaaagttGCTTATTGAAAAGACGTCTCAAAAACAATATAAAC
ATGTTTCGAACTAAAAGCACAAGGAGACAGCCATGTTTAAACCCCTACAG
AGAATTTGTCAACGCATTAAGGCAGCAAAAACATTGTTTGGTGCATTTTG
TTACATGATGCAAAACACATGAATCAAAAGACCGCGCTTTACAGAATTTT
GATCCGTGGCGCAGACTTCCTACTGTGTGTAATAATTGTGTGTTAAATCG
AAACATATACCAACATTTTTACACAAGACGTAAACAATAAATGTCAGCAA
AGAATTTaagtctttgtttttttaagttttatgtaaaaagattaattcaa
aaaagtgaagaagttATTTGTCGGACAACAGCATACATAGTGTTTTAAGC
CTCCCTGAAAATAAATACATTTAGTGACTAAAAGGGATAACAACACTTTG
TACCCCTTTaaggtagaaaatgaaataaaaagtgaATACGAAAAATCGTC
CAAAGgatattgaaaatttgagatcggattttatagattttgcattaaat
gtttaaaaattattaGAAAACCTTTTCTTAGTAAGAATTTCTTCcgaaaa
tgttttaaaacatCGTCGGACTTTTACGTATTGAAAATAAGTTGctcaat
aataaattttgacACGTACTGGCGGGTTCCTTTGACTTGGCTTTTTACGT
CTTATTGAAGCCTCGTAAATTAACACAGAGAAAGCATTTTCATCTGTTAT
TGTCTTTCAAAGATCATAAAAACGCATAGATATTTGAGAAGTGGTAATAA
CGTTGTAAAGACAGCCATAAGACGTACATTTTAGGTCCAAGACAAAAGCT
ATGTTTCTAAAGAAATAGGAGAAAAGAGTTTACGCAATAATACCTTCAGG
TAGATTGACTTAGAGACGGAGAGAGAACCACGATTTGGAtaagcctggat
atccaggcagTAATTTCATATTTTCGATGTTTCTGGTTTATCCTCTGGTC
TTTCTAAAGCGATTTGCATTCCATTATCAGAATCAGAAGGCAATGCATGC
TTGTCATTTTGTCAATTCAGTGAAGCTAACAATTTAACGACTTTGGGTTT
AAAAGCATCTAGGTAGAGCAAGCTGTCAGGCCCCtaggaaacattttcat
tttgaggaGGCAAAGTGAGAAATATAAACCGAGGGCCAGCCATGGATTGG
CCCGAGGGAAACAAATTCGcaatttaaggtgtctagattgctgGAAAACG
TATCTAATCAAAGGATTATGTTCAAAATGAAGCCATTAatacaagatttt
tttttgggaGGGGACCCCTTTGCCCCCTCCCCGGTTGCTACGGGCCTGAG
TTGTAAAAAGcagaaatatgaaaataagaaaaaatttaaaactggAGTAT
GCAGGCTTAGATGATAGGTATGAAGGAcaaatgagtttttttattatttt
gtagaGAAAAGGGATTTCTTAGCCTGATAGGAATGAACATAATGCCAACG
CATAGTGCTACTAACTTTGCAATTTGACCCCTTAAGTGGATAGAttttgg
cgattggccaaaatacgatttttggcggagatttaatttggcgatagatc
aatttcgtaaaatttggcgaggatttgatttggcgaattggaaattttgg
cacactgaaatgggtgaaaattactcaaaaatatactaaaaatttgcgat
ttttcacataattctctttttgttaaatttggcggggattcaaatttaat
tcccgccaaaatttatccacttaaggtattgaAGAGAGATTCTTTTAACA
TTTAAGGGACTCGCAGAGCCTTGCACATCTTTtgataagaacataaggtt
caCATGGtcaagagcaagttaagaacattttaaggctttccgGACTCTTG
AAGTAAAACACTCGAATCCATaggaaaaattgacaaaatactcacaaaat
ggtacaAATAAGAATGTTATAAAAATGTTAAGGCCCTTTTCAGGCTTTAA
GCTCAAAAAGAAATGAACCTCCGAAGAGTTTTAGATAACCCtgatagaaa
aagtgtattattcgtaattacacccctgtctcacagccccggtggaactt
tttaaaaatttaaaaattcctattgaaatcctaatggggataacaatttt
attgtttcaaggttaaaaatcccagtggggatggttttggagtgcaattt
ttaaacatagaatctcgagtggggatgaaatcaaagtcaatttcccagtg
ggctTAAATTCAAgagtattttcccaccggggacgaaattgtTGCTTAAT
TTTCCAGTTGGGCTGGGGtctcagcgggtctgtgacacaggggtgtgtaa
TTGGTTCTTATAATTAAACCTCTTGGTCATATAAgtatatcaaaaatata
tacataatcctttttttatctttctacaGAAAAACCAAAAGACGAGAAAC
CACCAAAATCATGGCAATCAGCCAAAGTTCGAAAACGATCACGAACCACT
TACACACGAGCGCAACAATTAGAACTGGAAAAAGAatatcgatataatcg
atataTATCGAGAGCACGTCGAATCGAATTAGCTAAAAATTTGACACTAA
CagaaaaacatatcaaaatatgGTATCAGAATCGAAGAATGAAGGAGAAA
AGAGACGAGGAAGATATTATGAGAGGTACAACTGTTTTGGATCCTCGATC
TTcttattattaacttattttttattttatttttcaaactttttgccTCG
CTTCGTTTTTAGTTATTTCTTGTACATATTCTTGTAGTTTGTTAGATAGG
CTCTTTTATAAggacaaaaactaaaaatgttaaaaatttatttgatatcG
AATTTTTGGCAGGGAATTGATAAAAAAC Coding sequence (CDS) from alignment at scaffold_233:1430419..1435596+ >TCONS_00053612 ID=TCONS_00053612|Name=TCONS_00053612|organism=Clytia hemisphaerica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_233:1430419..1435596+ (Clytia hemisphaerica)
ATGAGCAACAATTCGAATTTCAACAGCAATGCTGTCACAGCCACCAATCT
GCAGTCAATATCTTcccaacaacagcaacaacaacaacgatcGTACTGGC
AGCAACATCGCCAACGTCTTAGTCATCCTCCAATTTTGGAAACAAACACA
TATTCCGCTTCGTCACCTTCTTTCAATTCAATATATCCAATCACTACATG
TCGATACGAATACACAACCAATTTCGTTCCAGCTATACCACAATCACTGA
CAGCTCTGGCAAGTTCAACACCACCATCAGGTCTTGGACATTCAGTATCA
TATCTAAACACACCAGCTAGCTCAGACCCTTTAGATTATAACAACACTTT
ACAAAATAATCTGACGTCTTCAGGATCAGTTATAAACTCTCAGAACACTA
AATTCCTATCATGTCAATATTCAGGATCAACACTACAAGGTAAACAGATG
GAATCTGAAGATCTTCATTTGACAAGTGGTGGTGTATATCAAAATGCATC
GCAATCAAGAGACATTAACAATTCACCATCATCTTCGTCAACAATATCCC
ATTATTCATATAATGACACAAATAACAACACTCAAACACGTATTAAAGAC
ACTGATAAGAATACAGATACTCAAGGACAATCTTCATCATCAACAACTCA
GAAAAATAAGATGCCACCTCTAGATATGAAGGAAGTGATAGAAACTCTGG
CAACACTGAAGAATAATGGACAAATAAAGAAGGCAGATGGTGAAGAtagt
gacaaaaataaaaataaagAAAAACCAAAAGACGAGAAACCACCAAAATC
ATGGCAATCAGCCAAAGTTCGAAAACGATCACGAACCACTTACACACGAG
CGCAACAATTAGAACTGGAAAAAGAatatcgatataatcgatataTATCG
AGAGCACGTCGAATCGAATTAGCTAAAAATTTGACACTAACagaaaaaca
tatcaaaatatgGTATCAGAATCGAAGAATGAAGGAGAAAAGAGACGAGG
AAGATATTATGAGAGGTACAACTGTTTTGGATCCTCGATCTTcttattat
taaATGAGCAACAATTCGAATTTCAACAGCAATGCTGTCACAGCCACCAA
TCTGCAGTCAATATCTTcccaacaacagcaacaacaacaacgatcGTACT
GGCAGCAACATCGCCAACGTCTTAGTCATCCTCCAATTTTGGAAACAAAC
ACATATTCCGCTTCGTCACCTTCTTTCAATTCAATATATCCAATCACTAC
ATGTCGATACGAATACACAACCAATTTCGTTCCAGCTATACCACAATCAC
TGACAGCTCTGGCAAGTTCAACACCACCATCAGGTCTTGGACATTCAGTA
TCATATCTAAACACACCAGCTAGCTCAGACCCTTTAGATTATAACAACAC
TTTACAAAATAATCTGACGTCTTCAGGATCAGTTATAAACTCTCAGAACA
CTAAATTCCTATCATGTCAATATTCAGGATCAACACTACAAGGTAAACAG
ATGGAATCTGAAGATCTTCATTTGACAAGTGGTGGTGTATATCAAAATGC
ATCGCAATCAAGAGACATTAACAATTCACCATCATCTTCGTCAACAATAT
CCCATTATTCATATAATGACACAAATAACAACACTCAAACACGTATTAAA
GACACTGATAAGAATACAGATACTCAAGGACAATCTTCATCATCAACAAC
TCAGAAAAATAAGATGCCACCTCTAGATATGAAGGAAGTGATAGAAACTC
TGGCAACACTGAAGAATAATGGACAAATAAAGAAGGCAGATGGTGAAGAt
agtgacaaaaataaaaataaagAAAAACCAAAAGACGAGAAACCACCAAA
ATCATGGCAATCAGCCAAAGTTCGAAAACGATCACGAACCACTTACACAC
GAGCGCAACAATTAGAACTGGAAAAAGAatatcgatataatcgatataTA
TCGAGAGCACGTCGAATCGAATTAGCTAAAAATTTGACACTAACagaaaa
acatatcaaaatatgGTATCAGAATCGAAGAATGAAGGAGAAAAGAGACG
AGGAAGATATTATGAGAGGTACAACTGTTTTGGATCCTCGATCTTcttat
tattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053612-exon-scaffold_233-1491911889:1430419..1431314 | TCONS_00053612-exon-scaffold_233-1491911889:1430419..1431314 | Clytia hemisphaerica | exon |
| TCONS_00053612-exon-scaffold_233-1510915933:1430419..1431314 | TCONS_00053612-exon-scaffold_233-1510915933:1430419..1431314 | Clytia hemisphaerica | exon |
| TCONS_00053612-exon-scaffold_233-1575043694:1430419..1431314 | TCONS_00053612-exon-scaffold_233-1575043694:1430419..1431314 | Clytia hemisphaerica | exon |
| TCONS_00053612-exon-scaffold_233-1491911889:1435148..1435596 | TCONS_00053612-exon-scaffold_233-1491911889:1435148..1435596 | Clytia hemisphaerica | exon |
| TCONS_00053612-exon-scaffold_233-1510915933:1435148..1435596 | TCONS_00053612-exon-scaffold_233-1510915933:1435148..1435596 | Clytia hemisphaerica | exon |
| TCONS_00053612-exon-scaffold_233-1575043694:1435148..1435596 | TCONS_00053612-exon-scaffold_233-1575043694:1435148..1435596 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1430419..1435596 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00053612 vs. Swiss-Prot (Human)
Match: HXB7 (Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4) HSP 1 Score: 95.1301 bits (235), Expect = 3.264e-22 Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 2
Query: 947 RKRSRTTYTRAQQLELEKEYRYNRYISRARRIELAKNLTLTEKHIKIWYQNRRMKEKRDEEDIMRGTTVLD 1159
RKR R TYTR Q LELEKE+ YNRY++R RRIE+A L LTE+ IKIW+QNRRMK K++ + GTT D
Sbjct: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQD 207
The following BLAST results are available for this feature:
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