TCONS_00053613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053613
Unique NameTCONS_00053613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053613 ID=TCONS_00053613|Name=TCONS_00053613|organism=Clytia hemisphaerica|type=transcript|length=492bp
taagaaaaaatttaaaactggAGTATGCAGGCTTAGATGATAGAAAAACC
AAAAGACGAGAAACCACCAAAATCATGGCAATCAGCCAAAGTTCGAAAAC
GATCACGAACCACTTACACACGAGCGCAACAATTAGAACTGGAAAAAGAa
tatcgatataatcgatataTATCGAGAGCACGTCGAATCGAATTAGCTAA
AAATTTGACACTAACagaaaaacatatcaaaatatgGTATCAGAATCGAA
GAATGAAGGAGAAAAGAGACGAGGAAGATATTATGAGAGGTACAACTGTT
TTGGATCCTCGATCTTcttattattaacttattttttattttatttttca
aactttttgccTCGCTTCGTTTTTAGTTATTTCTTGTACATATTCTTGTA
GTTTGTTAGATAGGCTCTTTTATAAggacaaaaactaaaaatgttaaaaa
tttatttgatatcGAATTTTTGGCAGGGAATTGATAAAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_233:1434093..1435596+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053613 ID=TCONS_00053613|Name=TCONS_00053613|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_233:1434093..1435596+ (Clytia hemisphaerica)
taagaaaaaatttaaaactggAGTATGCAGGCTTAGATGATAGGTATGAA
GGAcaaatgagtttttttattattttgtagaGAAAAGGGATTTCTTAGCC
TGATAGGAATGAACATAATGCCAACGCATAGTGCTACTAACTTTGCAATT
TGACCCCTTAAGTGGATAGAttttggcgattggccaaaatacgatttttg
gcggagatttaatttggcgatagatcaatttcgtaaaatttggcgaggat
ttgatttggcgaattggaaattttggcacactgaaatgggtgaaaattac
tcaaaaatatactaaaaatttgcgatttttcacataattctctttttgtt
aaatttggcggggattcaaatttaattcccgccaaaatttatccacttaa
ggtattgaAGAGAGATTCTTTTAACATTTAAGGGACTCGCAGAGCCTTGC
ACATCTTTtgataagaacataaggttcaCATGGtcaagagcaagttaaga
acattttaaggctttccgGACTCTTGAAGTAAAACACTCGAATCCATagg
aaaaattgacaaaatactcacaaaatggtacaAATAAGAATGTTATAAAA
ATGTTAAGGCCCTTTTCAGGCTTTAAGCTCAAAAAGAAATGAACCTCCGA
AGAGTTTTAGATAACCCtgatagaaaaagtgtattattcgtaattacacc
cctgtctcacagccccggtggaactttttaaaaatttaaaaattcctatt
gaaatcctaatggggataacaattttattgtttcaaggttaaaaatccca
gtggggatggttttggagtgcaatttttaaacatagaatctcgagtgggg
atgaaatcaaagtcaatttcccagtgggctTAAATTCAAgagtattttcc
caccggggacgaaattgtTGCTTAATTTTCCAGTTGGGCTGGGGtctcag
cgggtctgtgacacaggggtgtgtaaTTGGTTCTTATAATTAAACCTCTT
GGTCATATAAgtatatcaaaaatatatacataatcctttttttatctttc
tacaGAAAAACCAAAAGACGAGAAACCACCAAAATCATGGCAATCAGCCA
AAGTTCGAAAACGATCACGAACCACTTACACACGAGCGCAACAATTAGAA
CTGGAAAAAGAatatcgatataatcgatataTATCGAGAGCACGTCGAAT
CGAATTAGCTAAAAATTTGACACTAACagaaaaacatatcaaaatatgGT
ATCAGAATCGAAGAATGAAGGAGAAAAGAGACGAGGAAGATATTATGAGA
GGTACAACTGTTTTGGATCCTCGATCTTcttattattaacttatttttta
ttttatttttcaaactttttgccTCGCTTCGTTTTTAGTTATTTCTTGTA
CATATTCTTGTAGTTTGTTAGATAGGCTCTTTTATAAggacaaaaactaa
aaatgttaaaaatttatttgatatcGAATTTTTGGCAGGGAATTGATAAA
AAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033828XLOC_033828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053613-exon-scaffold_233-1491911889:1434093..1434135TCONS_00053613-exon-scaffold_233-1491911889:1434093..1434135Clytia hemisphaericaexon
TCONS_00053613-exon-scaffold_233-1510915933:1434093..1434135TCONS_00053613-exon-scaffold_233-1510915933:1434093..1434135Clytia hemisphaericaexon
TCONS_00053613-exon-scaffold_233-1575043694:1434093..1434135TCONS_00053613-exon-scaffold_233-1575043694:1434093..1434135Clytia hemisphaericaexon
TCONS_00053613-exon-scaffold_233-1491911889:1435148..1435596TCONS_00053613-exon-scaffold_233-1491911889:1435148..1435596Clytia hemisphaericaexon
TCONS_00053613-exon-scaffold_233-1510915933:1435148..1435596TCONS_00053613-exon-scaffold_233-1510915933:1435148..1435596Clytia hemisphaericaexon
TCONS_00053613-exon-scaffold_233-1575043694:1435148..1435596TCONS_00053613-exon-scaffold_233-1575043694:1435148..1435596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1434093..1435596 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.000659252	0	0	0.107701	0.000713939	0.176234	0	0	0.0838826	0	0	0	0.102096	0	0.78733	0	0.139451	0	0.0284616	0.869847	1.54467	1.81714	0.376709	0	0	0	0
Blast
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BLAST of TCONS_00053613 vs. Swiss-Prot (Human)
Match: PDX1 (Pancreas/duodenum homeobox protein 1 OS=Homo sapiens GN=PDX1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.594e-22
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   97 KRSRTTYTRAQQLELEKEYRYNRYISRARRIELAKNLTLTEKHIKIWYQNRRMKEKRDEE 276
            KR+RT YTRAQ LELEKE+ +N+YISR RR+ELA  L LTE+HIKIW+QNRRMK K++E+
Sbjct:  147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEED 206
The following BLAST results are available for this feature:
BLAST of TCONS_00053613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDX11.594e-2270.00Pancreas/duodenum homeobox protein 1 OS=Homo sapie... [more]
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