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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053615 ID=TCONS_00053615|Name=TCONS_00053615|organism=Clytia hemisphaerica|type=transcript|length=2195bp
aaaaaagaacagaaaaaacaagaaatctttaaaaaaataactaCAATGGC
CAGCATCAATGGTGACAACATCGTTCCGAACGAAGAACGAAATGAAAAAT
TGGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACA
AAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAG
TCCAATGTATTTCAATAACAACGTTAAGTATGTTTTCGATGTCGATGTTT
GTGCAGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGG
ACCAACAAAATTGACTgtTCGGAGTTGGATGATTTACTCTTAGTTACAAA
TACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGAACATATGAAGA
CAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAAGTT
TTTCATGCTGCTCGAAAGTATGAATTGACTACATTAATTGAAACAATTAG
ATCAAGGTCTCTGCGCATCTTAGATTTGGAACTTCTAGCCAACGTACATT
ATACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTA
TATGAACATGTCAATATCAAAAATGATCCGGAGTTGCTTGCAATATTTCA
CCTCTTCAAATTAATTATTCACAAATTTCAAATCCCCGACTTGGCttcta
aaaaagatttcttaACCCACCGGATTCATGAGCACTTAATTGATTTTGAG
TCAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTTGTCTTGGACGTTga
gaacaaagaaattcatgTCAGTTCGTATTTACTCATAAACAACTCTCCTG
TATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGA
AGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTTCTTCA
ATTTCTACACACACTTCAAGATATTAAAGATGACACTAATATTTGGGCTC
TGGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTGTCCAACAAAATA
CAGTCCTTCATACGAAATTGTGCTAGAAACAGCACAAAGACAATTCTCAA
CTATTTAGTGTTAGCTGAAGATATGCATTTTGGTATTGAAGTAGAAAgga
gtttggtttctaaactcTCAAGAGGGTTCCAAGATATCAGTATGTGCTTG
GAATTTCTCCTACTCAGCCGTCGAATGCAAGTTTGGATTGCAAGAAGAAA
ATTAGCTGATTCTTTGAAGAAGTTTCTGATTGATCCGCACGATGATACTC
TTTCCAGGTATGGCAAGCAAACAACCCGAGAGAAAAAAGAGGCTGGGATA
AAGAAATATAAAGCAGTTGATGCTGACGTTGTTTCCATATTTCATGATCT
AGATCAACCCAAAATCGAGCTTATAAATGCATAATGGCATACATAATCAC
AATTTTTTGTTTCTGCCAGATTCTATTATATTAACAAAAagttctgtttt
atttaccatgcattgggcttttccagaaaaaaaccgcacaccccctgttg
aggaggtctatCCCTTTaaggctggaaatgctgtaaaccccctggaattc
caggaaattttagatttaaacCCCTCTGAAATTCTTAaatttagtaggat
ttaaaaagctaccccatggaattccagttatttttgacagatttttgtat
ctctcTATGGAATTCCACCACatatatcaaaccttacccccttggaacga
aagtggacctcctcaacaggggttttttttctggaaaaacacATTCTTAA
AATGATTCTgtccctttttttgaaaatactttttattAAATCATTGtgat
cattttttaaataaaaaacttatTGCCTCATTTCTTGccttttttggaca
ttttttaaaattgatgtttttgttttttgtccATAACTTCTGAACTAATA
aagcaaatttcaaaaataatacaCCAAAgtttaagttaggctttccttta
aacaattcaaaaaaaaaaaatgtaacttctttgtggcacacccggtatct
CTTATGTTATTCATTTATGTATAAGAAGTGGTTTATTTGAAAATGATAAG
AGTTTAAATGTACAACATATGTATTAATTAAGTATAAATCTTGTTAAGAA
ATTCTAATCACTAATCAATCGAAACTGAAAGCCCCATTATTGAAA Run BLAST on NCBI transcript from alignment at scaffold_233:1447151..1450231+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053615 ID=TCONS_00053615|Name=TCONS_00053615|organism=Clytia hemisphaerica|type=transcript|length=3081bp|location=Sequence derived from alignment at scaffold_233:1447151..1450231+ (Clytia hemisphaerica)
aaaaaagaacagaaaaaacaagaaatctttaaaaaaataactaCAATGGC
CAGCATCAATGGTGACAACATCGTTCCGAACGAAGAACGAAATGAAAAAT
TGGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACA
AAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAG
TCCAATGTATTTCAATAACAACGTTAAGTATGTTTTCGATGTCGATGTTT
GTGCAGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGG
ACCAACAAAATTGACTGTAAGTTTCAGCTTTTTTCGCATTTTGAAAGTAT
CAATCAAAAGCCGTATTGCTTTGAATAAACACCCCGGGTGGCGTTCAAAG
GTGGCGTTCATCGAAAATCTTTCCTCAAATTAGTAGATACAAGATAGGCC
GATTCGCGAAATTCTATCTACGCGAAAAATTAAAGATCAGTGACTTTAAT
GTAGTACCAAGAAGACTATTTTAGTTTAAACCTATAGAAAAGGTGCCAAG
AGATTCTCATATTTTTATTTCTCATACAAATATGTTTTAATACTTTACTT
tggattttttgtatttttaggtTCGGAGTTGGATGATTTACTCTTAGTTA
CAAATACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGATTATATG
AAGACAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATTATTTGCA
agtttttcatgctgctcaaaAGTATGAATTGACtacattaaccctttaag
tgccgatgtcgtatatatacgacatgggctatataggagggcgaagccct
cctgtaatgcccagtttgagttagaaatcgttatNGAAAATTAAAGATCA
GCGACTTTAAGGTAGTACCAAGaaggctattttagtttaaagcTATAGAA
GGTGCCAAGAGATTCTCATATTTTTATTTCTCATACAAATATGTTTTAAT
ACTTtggattttttgtatttttaggtTCGGAGTTGGATGATTTACTCTTA
GTTACAAATACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGAACA
TATGAAGACAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATTTAC
TGCAAGTTTTTCATGCTGCTCGAAAGTATGAATTGACTACATTAATTGAA
ACAATTAGATCAAGGTCTCTGCGCATCTTAGATTTGGAACTTCTAGCCAA
CGTACATTATACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGA
CCTCTGTATATGAACATGTCAATATCAAAAATGATCCGGAGTTGCTTGCA
ATATTTCACCTCTTCAAATTAATTATTCACAAATTTCAAATCCCCGACTT
GGCttctaaaaaagatttcttaACCCACCGGATTCATGAGCACTTAATTG
ATTTTGAGTCAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTTGTCTTG
GACGTTgagaacaaagaaattcatgTCAGTTCGTATTTACTCATAAACAA
CTCTCCTGTATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTC
AAAACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTAC
TTTCTTCAATTTCTACACACACTTCAAGATATTAAAGGTATTTTTGTGTA
CAATACTCTTGAAGTAACTTatcgttttttgaaaatttcccgaCCTTTTT
TCGACCTTCACAAACAAATTATTTCTATAGTGTCTTTTCTAATCATCAAT
GGatttagattttcaaaatttccttctTGTTTTTTTACTGTTCGAATTTT
CCTACCCATTTGTAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGT
CAAGAATATCAAGTGGATTGGCTGTCCAACAAAATACAGTCCTTCATACG
AAATTGTGCTAGAAACAGCACAAAGACAATTCTCAACTATTTAGTGTTAG
CTGAAGATATGCATTTTGGTATTGAAGTAGAAAggagtttggtttctaaa
ctcTCAAGAGGGTTCCAAGATATCAGTATGTGCTTGGAATTTCTCCTACT
CAGCCGTCGAATGCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTT
TGAAGAAGTTTCTGATTGATCCGCACGATGATACTCTTTCCAGGTATGGC
AAGCAAACAACCCGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGC
AGTTGATGCTGACGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAA
TCGAGCTTATAAATGCATAATGGCATACATAATCACAATTTTTTGTTTCT
GCCAGATTCTATTATATTAACAAAAagttctgttttatttaccatgcatt
gggcttttccagaaaaaaaccgcacaccccctgttgaggaggtctatCCC
TTTaaggctggaaatgctgtaaaccccctggaattccaggaaattttaga
tttaaacCCCTCTGAAATTCTTAaatttagtaggatttaaaaagctaccc
catggaattccagttatttttgacagatttttgtatctctcTATGGAATT
CCACCACatatatcaaaccttacccccttggaacgaaagtggacctcctc
aacaggggttttttttctggaaaaacacATTCTTAAAATGATTCTgtccc
tttttttgaaaatactttttattAAATCATTGtgatcattttttaaataa
aaaacttatTGCCTCATTTCTTGccttttttggacattttttaaaattga
tgtttttgttttttgtccATAACTTCTGAACTAATAaagcaaatttcaaa
aataatacaCCAAAgtttaagttaggctttcctttaaacaattcaaaaaa
aaaaaatgtaacttctttgtggcacacccggtatctCTTATGTTATTCAT
TTATGTATAAGAAGTGGTTTATTTGAAAATGATAAGAGTTTAAATGTACA
ACATATGTATTAATTAAGTATAAATCTTGTTAAGAAATTCTAATCACTAA
TCAATCGAAACTGAAAGCCCCATTATTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053615-exon-scaffold_233-1491911889:1447151..1447466 | TCONS_00053615-exon-scaffold_233-1491911889:1447151..1447466 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1510915933:1447151..1447466 | TCONS_00053615-exon-scaffold_233-1510915933:1447151..1447466 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1575043694:1447151..1447466 | TCONS_00053615-exon-scaffold_233-1575043694:1447151..1447466 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1491911889:1448175..1448837 | TCONS_00053615-exon-scaffold_233-1491911889:1448175..1448837 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1510915933:1448175..1448837 | TCONS_00053615-exon-scaffold_233-1510915933:1448175..1448837 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1575043694:1448175..1448837 | TCONS_00053615-exon-scaffold_233-1575043694:1448175..1448837 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1491911889:1449016..1450231 | TCONS_00053615-exon-scaffold_233-1491911889:1449016..1450231 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1510915933:1449016..1450231 | TCONS_00053615-exon-scaffold_233-1510915933:1449016..1450231 | Clytia hemisphaerica | exon |
| TCONS_00053615-exon-scaffold_233-1575043694:1449016..1450231 | TCONS_00053615-exon-scaffold_233-1575043694:1449016..1450231 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1447151..1450231 + |
Blast
The following BLAST results are available for this feature:
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