TCONS_00053617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053617
Unique NameTCONS_00053617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053617 ID=TCONS_00053617|Name=TCONS_00053617|organism=Clytia hemisphaerica|type=transcript|length=518bp
GTCCTAGTcccatattttcttttttgtaatcCTGTGAATATTATCAGTAA
AACCCAAAAAGTAGTGTGAGCTGCTCTGGGAGTATGAGATTAAATgtgaa
attgtttttatttatttcatttttgttatTCACCtagatatttatttatt
tagtgaCGTCAAACGTCAAACTGGTTATCCGAATGGCTTCGATTGCAGTT
TTTTAAAGGTTTGTGGTTTTTTGAGTAGTTCGATAGGTGGTTCATGCTTT
CACTCATGTGTATGGCACTTCTGGTTTGACAAAACCATCAACGGTTATCA
TGGGTCAAAATGGTAAATAGATTATTTATAACGAGAAGATCTGAGTTGCA
TAGGTTGTTCTtcggtgaatttttttttatttcaaaaaccttGGCTTGAT
TACCTCATAATTAGTTGAACTCGATCATGTATTGCTGGATATTGCTGATA
TTTACACATGCTCTGATGTACGGCGAAGCATCAACACTTCAAACATACAA
CTCTGGAATCCGATTCNN
Run BLAST on NCBI

transcript from alignment at scaffold_233:1476844..1477478+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053617 ID=TCONS_00053617|Name=TCONS_00053617|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at scaffold_233:1476844..1477478+ (Clytia hemisphaerica)
GTCCTAGTcccatattttcttttttgtaatcCTGTGAATATTATCAGTAA
AACCCAAAAAGTAGTGTGAGCTGCTCTGGGAGTATGAGATTAAATgtgaa
attgtttttatttatttcatttttgttatTCACCtagatatttatttatt
tagtgaCGTCAAACGTCAAACTGGTTATCCGAATGGCTTCGATTGCAGTT
TTTTAAAGGtattaatttttcataaattcatATGCGTGAATATTCATATT
CGATGAATGTGTTACCTTTTTCAGTTACGCATTCATTCAATGATTCTCTT
TTTACTTCCTATATTTATTATTTAGGTTTGTGGTTTTTTGAGTAGTTCGA
TAGGTGGTTCATGCTTTCACTCATGTGTATGGCACTTCTGGTTTGACAAA
ACCATCAACGGTTATCATGGGTCAAAATGGTAAATAGATTATTTATAACG
AGAAGATCTGAGTTGCATAGGTTGTTCTtcggtgaatttttttttatttc
aaaaaccttGGCTTGATTACCTCATAATTAGTTGAACTCGATCATGTATT
GCTGGATATTGCTGATATTTACACATGCTCTGATGTACGGCGAAGCATCA
ACACTTCAAACATACAACTCTGGAATCCGATTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033831XLOC_033831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053617-exon-scaffold_233-1491911889:1476844..1477051TCONS_00053617-exon-scaffold_233-1491911889:1476844..1477051Clytia hemisphaericaexon
TCONS_00053617-exon-scaffold_233-1510915933:1476844..1477051TCONS_00053617-exon-scaffold_233-1510915933:1476844..1477051Clytia hemisphaericaexon
TCONS_00053617-exon-scaffold_233-1575043694:1476844..1477051TCONS_00053617-exon-scaffold_233-1575043694:1476844..1477051Clytia hemisphaericaexon
TCONS_00053617-exon-scaffold_233-1491911889:1477169..1477478TCONS_00053617-exon-scaffold_233-1491911889:1477169..1477478Clytia hemisphaericaexon
TCONS_00053617-exon-scaffold_233-1510915933:1477169..1477478TCONS_00053617-exon-scaffold_233-1510915933:1477169..1477478Clytia hemisphaericaexon
TCONS_00053617-exon-scaffold_233-1575043694:1477169..1477478TCONS_00053617-exon-scaffold_233-1575043694:1477169..1477478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1476844..1477478 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229629	0	0	0.127184	0	0.122352	0	0.138193	0.580513	0.239686	0.814259	0.152932	1.06904	1.1102	0.391173	0.349824	0.0910111	0.176686	0.610253	0	1.2211	1.29952	0	0.239368	0.369814	1.76027	0.157434	0	0.254871	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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