TCONS_00053622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053622
Unique NameTCONS_00053622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053622 ID=TCONS_00053622|Name=TCONS_00053622|organism=Clytia hemisphaerica|type=transcript|length=2863bp
aagtgcttataaaaaagcttaGCTATTTATATTGTGATATGCTTACAAaa
aaatgaTATAAACTTCTAATAAAAAACCAAGACAAACCAccgttttaaaa
ataattgacaacAAAAAATACCCATTATAAATCAGACAGAAAAAAACTGT
GTAAGACTCTTTCTACACTGTAAAATATATCATATACTTTTTAACTTAAC
ATAACTGAGAAATGTTGAtttagtgttttttttctctttttctgtgTTAT
GTAGTAGAGATGAGAATCACTATGTACTAATAATGTTGGGAGACGTGATG
GATTGTTTTCGACCAAATGAATAGATTGGAGTCTCCCTACACTGAGAAGA
TTCAAGGATACATACATATGTGACAGAAAAAACATACATATATGATATGG
GTTGAGGGgtaatcacttgaaaaaaggaAAGGCCTGACGCTAAAAAGACA
TGAGaaatggcaaaaataaacatttgCAATACAAATTATGTAATACTCGC
ATCGTGGATACCAAAGGATGATCAATGTAGTTTAGAAGATCTGACCAACT
TCATTGAAGATTCCCTTCAGATTCCAAGCCAATACCAAGTGTTATNCGTC
TACAAGATCTGACCAACTTCATTGAAGATTCCCTTCAGATTCCAAGCCAA
TATCAAGTGTTATATAGCGAAGGAACTGTATTGAAGCATACAGCTCAAAT
AAGGAATATCGCAAGAGGAGATTACGATAAGGAACTTGTTTTAGCATATA
AGTATTTCCCGACATGGGTCAAAGGAACGCTTTCTAGTGAGGTCATTGGT
GCGATCCAGAATTGCAATCTAGAAGAATTGAGATCAGTGTCAGTGATCTA
CAAATACAAAAGCTTTAACAAAACGTTGATCGAAAACTTACTGGATGAAC
TCAAAAAACCTGAATGTTGGATGGAAGAATTAAgacaaatcatttttcaa
aagTATAGTTTATCATATCGCTGGTTCGAATTACGACACCCACGCTACAA
AAGACTGCACTTGAACGAAGAACATACGTCCGTCCTTTTAGAACAATTAT
TCTTGTCAGGTTATTATGTTCGAGATCAATTTAAAGAAGATGCGATTCTT
GAGCTTTCGTTAGAAGACAAGGAGAAAATGGATATGTATAGTTTGTTTCA
CTATCGATTGtttggtttgaaaaaaattgttctgaaaTCGCTAACTAAAG
TGATGGAGCTAGATGTTAagGTTTGCCAATCATTTCCACGATTAAAGAAA
TCCATTGAGGAAGAATGGCTCATACCGGCACACCTTCAATTATATTTACA
CCATGGAAAAGAGATTCTGGAAGAGAAATCTTTCCTGGATGTCTTTATAG
AGGGCGCTACAGAGGCGGAACAAGATGACGGCAAGTTGGAACTCAATTTG
ATATCAAAAACTCCTCAAAATTTGACTGTAATACTGGTGCTACCAGAATA
TATGCAAGACGTAGGGATACCTACGGAAATCTCTATGCCCGAAACTTCAT
CGATCAAGGACGTTGAAAAAACATTAACAGAAGAAATCTCTTTACCAATA
TCCTTATACACTTCATCCCAACCATACAATGAACTTTTATACATACGAAA
AAGAATATTATTATACCAGCTTAAATCGTCAAATGAGGACGCTATNAACG
AGAGAGAACATTATTATACCAGCTTAAACCGTTAAATGAGGACGCTATTG
TAATGTACGCGTATCGAAAAATTCATTTAGCGATATACAGCTGTAAGAAG
TGCAATAGTGAACAGGTGCCATTAGTCGAGACGTCGTTCGCCTTACAAGG
GCAATTAACAGTGAAGGATGTTGTTCACACGTTTATTAAGAATCAGAATG
CCGAAGGGCATTTATTATATTGCTGTGATAACACAAAAGAGTCACAGTAT
AAGCTTTCAGACATGAACTCGAAAAGTATTGAACTGAGTACAAACCTTAT
TGATATACCGGGTGACTCCGTACTGANGAAAGTATCAAACTGAGTACGAA
CCTTATTGATATACCGGGTGATTCCGTACTGAGTTTCGAACCCGAACCAG
TGAACGTTGAAGATGTACAAGTGGGATCACCCATAAAATGTGTTTTGATT
TGATATGGATTTTTTCAATATAGCTGGGTGTCCGACAAAGTACGAGCCTT
GGATCACCCGTACAATGTGTTTTGATGTGacatggatttttttttcaata
tggcTGGGTGTCCAACAAAGTACGAACGTTAAAGATAAACCGGGCGATTC
CGTACCGAGTTTACAACTCGAACCAGTGGGATCACCCGTACAACGTGTTT
TGATGTGATATGGATTTCTAACAAAGGGTGTCTAACAAAGTACGAACGTT
AAAGATATACCGGTCGATTCCGTACCGAGTTTCCAACTCGAACCAGTGGG
ATCACCCGTACAACGTGTTTTGATGTAATATGGATTTCTAGCAAAGGGTG
TCCAACAAAGTACGAACGTTAAAGATATACCGGGCGATTCCGTACCGAGT
TTCCAACTCGAACCAGTGGGATCACCCGTACAACGTGTTTTGATGTAATA
TGGATTTCTAGCAAAGGGTGTCCAACAAAGTACGAACGTTAAAGATATAC
CGGGCGATTCCGTGCCGAGTTTTCAACTCGAACAAGTGGGATCACATGTT
AAATATGTTTTGATGTGAATTTTTAAATGGATTTCGTCTAGTTTTTGCTA
TATTTTGATTTGtcgtgattttttttatatattagcGGTAAAGTTACTAT
AGAGCCACACCTTGATATTGATTAAACCTGAGATTTCGTACAATGTTATC
AATTTATACCAGTATGGTCTCTCATTAGTTTTCAAATTGATACTTCATTT
AACTATATCTTTC
Run BLAST on NCBI

protein sequence of TCONS_00053622-protein

>TCONS_00053622-protein ID=TCONS_00053622-protein|Name=TCONS_00053622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MEELRQIIFQKYSLSYRWFELRHPRYKRLHLNEEHTSVLLEQLFLSGYYV
RDQFKEDAILELSLEDKEKMDMYSLFHYRLFGLKKIVLKSLTKVMELDVK
VCQSFPRLKKSIEEEWLIPAHLQLYLHHGKEILEEKSFLDVFIEGATEAE
QDDGKLELNLISKTPQNLTVILVLPEYMQDVGIPTEISMPETSSIKDVEK
TLTEEISLPISLYTSSQPYNELLYIRKRILLYQLKSSNEDAXNEREHYYT
SLNR
Run BLAST on NCBI

transcript from alignment at scaffold_233:38875..52718-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053622 ID=TCONS_00053622|Name=TCONS_00053622|organism=Clytia hemisphaerica|type=transcript|length=13844bp|location=Sequence derived from alignment at scaffold_233:38875..52718- (Clytia hemisphaerica)
AAGTGCTTATAAAAAAGCTTAGCTATTTATATTGTGATATGCTTACAAAA
AAATGATATAAACTTCTAATAAAAAACCAAGACAAACCACCGTTTTAAAA
ATAATTGACAACAAAAAATACCCATTATAAATCAGACAGAAAAAAACTGT
GTAAGACTCTTTCTACACTGTAAAATATATCATATACTTTTTAACTTAAC
ATAACTGAGAAATGTTGATTTAGTGTTTTTTTTCTCTTTTTCTGTGTTAT
GTAGTAGAGATGAGAATCACTATGTACTAATAATGTTGGGAGACGTGATG
GATTGTTTTCGACCAAATGAATAGATTGGAGTCTCCCTACACTGAGAAGA
TTCAAGGATACATACATATGTGACAGAAAAAACATACATATATGATATGG
GTTGAGGGGTAATCACTTGAAAAAAGGAGTACGATACTTTTTGACTTTTT
TTATTACTTTTATTTGACTTTTTTACTTTTTTTTGACTTTTTCAAACTTT
CATTTTGACTTTTTCTCGACAAAAACGCCCACCGCCCTCGGGCGCCCAAA
ATTTTCAACCCAAATCTTTCCAAAAACACCCACCGCCCGTAAATTTTGCT
TCACCCATACAGGAGATTCACACCTTGTAAATTAATTACACTTGATAATT
ATAGGTAATCAGAAGGTCTATTAGTACAAATAGTGGGGAAAACATCTCCA
CATTGCCCGATGATGGGAGAAGAATGTCTCGAAACGTAGCCAAACGTAAA
TCTCGTGATCGAAGCCACGATAGACTTCCAATATGAATATCACTGGGCCG
ATAAACGCAAACTTATTTAGATTTTGACTTTTTCTTTGACTTTATTGATT
TTTTGTATTGGTGTACGAAATTTTTTCAACCCCTCGATATGAGTGGTCAG
GGAAAATTCTAGAAAGACAGGAAAGTGTCCGTTGGTGGACCAACTGTTTT
TTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNCCCGGCCGCAGACTTTCGTTTCGTTTCGTTGATACATTAGTAT
TCAGGGTTTACTTCATACTGTTCATACATAAAAGTTATCTTTAAAGTTAT
CAAAAATAGCAACAAAAACACTTTCTTTCTATTTTTCGCCTTATTAAAAG
GGAACAGAAACTTCTGACTTCGGGTAAAAGATTTAGTTGCGGATAAAGAA
TTCAAGAAAAAGCTTTGTCAGATGATAAAATGTCGGAGAATTTTTGCAAT
TGAAAAAAAATTGTCGAATTCCACTTGGAAGCAGATCCTTTTAGCTCTAT
GGAAACAGTTTTTTCTTAAATTTATCAACAAATTTTTTCCAAATATTTCC
TACAATTGTCAAATCGAATTTAGGTCGAAATCTATTTTTCCAAATTAATT
AGTGAATTTTAGTTTAATGTTAAAAAGCTTTTTCGGCCATCCTATAATTT
GTCTCCCTGCCATAATGTATTCGTAAAAGCTTTCTTTCGTATTCGTAACA
GTATATAATTTTCTCTTTCGCGTTTTCCAGGAATACCTACGGAAATTTCT
ATGCCCGAAACTTCATCGATCAAGGACGTCGAAAAAAAATTAACGGAAGA
AATCGTTTTACCAATATCCTTATACTCNAAGGACGTCGAAAAAAAATTAA
CGGAAGAAATCGTTTTACCAATATCCTTATACTCTTCAGCCCAACCATGC
GATGAACTTTTATACAAACCAGGGAGATTATTATACCAACTTAAACCGTT
AAATGAGGACTCTATTGTAATGTACGCATATCGAACAATTCATTTAGCGA
TATACAGCTGCAAGAAGTGCAATAATGAACAGGTGCCATTAGTCGAGACG
TTGTTCGCCATAAGAGGGCAATTCACAAAAGTGAAGGATGTTGTTCACAC
AATTAATAATAATTATCAGAATGAAGAAGGACTATTATTATATTGCTGTA
ATAACACAAAAGAGTCACAGTATAAAACAAATGCCCTGTCAAAGTATTTC
AGTATTTCAGACATGAATTCGAAAAGTGTCAAACTGAGTACGAACCTTAT
TGATATACCGGGTGATTCCGTACTGAGTTTCGAACTCGAACCAGTGAAAA
AATGTGTTTTGATGTGATATGGATTTTTTTCAATGTGGCTGAGTGTCCAA
CAAAATACTAACATTAAAGATATATCGGGTGATTTCCGTGCCGAGTTTCC
AACTCGAACAAGTTGGATCACCCTTTAAATGTGTTTTGATGTGACATGGA
TTTTTTCAATGTGGCTGGGTGTCCAACAAAGTACGAACGTTAAAGATATA
CCGAGTAATTCCGTGCCGAGTCTCCAACTCGAACCAGATGTGATATGGAT
TTTTTCCAATATGGCTGGGTGTCCAACTAAGTACGAACGTTTAAGACATA
CCGAGTAATTCCGTGCCGAGTTTCCGACTCGAACAATTGGGATCACATGT
TAAATGTGTTTTGATGTGATATGGATTTTTTTTCAATATGGCTGGATGTC
CAACAAAGTACGAACGTTAAAGATATACCGGGCGATTCGGTGCCGAGTTT
CCAACTCGACAAGTGGGATCACATGTTAAATGGGTTTTGATGTGAATTTT
TAAATGTCTTTCATCTAGTTTTCGCTATTATTTTAATTTGTCGTGAATTT
TTTGATATATTAGCGGTAAAAGTAACTATAGCCACGCCTTGCTATTGATT
AAACCTGAGATTCCGCACAATGTTATCAATTTATACCGGTATGGTCTCTC
ATTAGTTTTCAAATTGATACTTAATTTAACGATATCTTTCGATCATTAGA
AATATATGGCTTTAACCTTTGTATTAGTGAATCACAATCTCGGTCAAAAT
CTATTGAGAATTTTGGTTAATTCCTCGTTTTTAGCTTCAACTTTTTTTTG
TTCGCGCGAAACTTTTTTATGACGTAATCTTTTCTCCAGGCAAAAAAGGA
TAAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNTGAGTGGTCATTGAAAATTCTAGAAAGACAGGAAAGTGTCCGT
TGGTGGACCAACTGTTTTTTTTTCAACTGCGGTTTTTCTTTAAAGAGGGT
TTTTCTTCATTATTTTTTTATAATTTAAGAAGGCCTGACGCTAAAAAGAC
ATGAGAAATGGCAAAAATAAACATTTGCAATACAAATTATGTAATACTCG
CATCGTGGATACCAAAGGATGATCAATGTAGTTTAGAAGATCTGACCAAC
TTCATTGAAGATTCCCTTCAGATTCCAAGCCAATACCAAGTGTTATNCGT
CTACAAGATCTGACCAACTTCATTGAAGATTCCCTTCAGATTCCAAGCCA
ATATCAAGTGTTATATAGCGAAGGAACTGTATTGAAGCATACAGCTCAAA
TAAGGAATATCGCAAGAGGAGATTACGATAAGGAACTTGTTTTAGCATAT
AAGTATTTCCCGACATGGGTCAAAGGTGAGCTTATGGATTATATGGATTA
TTATCGATCGTTTATGGATTTTCGCAAGCGAAAGTAAAAGTAATTGAAAA
TTCTTCGAAAATTTATGCTCGCAAAAGTTTATGCTCGCAAAAGTTTATGC
TCGCAAAAGTTTATGCTCGCGAAAGTTTATGCTTGCAAAAGTTTATGCTC
GCGAAAAAATCTCAAAAAAAATTGGAAAATCTATAAAACCTCGAAATCCT
AATAAATATCAAATTTTTGGCACATCAGTTTCCTTTAATGTCCTTTTAAA
ATCGAAGAGCAACCGTCTTTAGCGGATTTAAGGACTATTTTTCACTTTTA
AGGCAATTGTCATTGTTGCAATTTAAAAGAATTAATCAGTGTTGATATTC
TTTTCTTTAAGGAACGCTTTCTAGTGAGGTCATTGGTGCGATCCAGAATT
GCAATCTAGAAGAATTGAGATCAGTGTCAGTGATCTACAAATACAAAAGC
TTTAACAAAACGTTGATCGAAAACTTACTGGATGAACTCAAAAAACCTGA
ATGTTGGATGGAAGAATTAAGACAAATCATTTTTCAAAAGGTTGGATAGT
TTTATATCTTTTTCCTATTCAAATTTTTACTCAAAATATTACCAAATTTT
TCATGTTTACTTCGAGTTTTGAAACCACCCCTGTCTCACAGTCCCGGTGG
AATGAGTGGAACTCTCTACCGCAGTGGATGAACATTTCTATCGAAATCCT
TTCCCAGCTGACACACAACGTTATTGGCCCAGCGCTAAGCGTAGGCCTTT
CATTTGCAATTTTCTGTCTGTCCGTCCGTGTGTCACTTTAGGCAGAAACG
GCGCTTAAAACCAGTACCACACATTTTAATTTTGCCGTCTAGAGAGGGAA
AAGCTTGCTAAAGTCGGATACTGGCTATAAAAGATATATTTTCTGATTCC
GCGCTCCTCCAAAACAATTTTCAAAACAAAACAAGATGGCGGTCGAAGCG
AGGAGGTTAATTCATACTTTCTTGAACATTTTCTTTGCTTTAGTGGTCAA
GAGACTTTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCAGCTGGGCCTTCACGC
CGCTACGGCTTCTTGTTTCAACGTTAATCTAACGTTCAAAACGTCCATAT
AACGTTAAATTAACATTAAATTAACAAGCGGGGGGAGGGGTTCATGAGTC
ATGACCTCAAGAGATTTTCATTTTGTATTCCAGTATAGTTTATCATATCG
CTGGTTCGAATTACGACACCCACGCTACAAAAGACTGCACTTGAACGAAG
AACATACGTCCGTCCTTTTAGAACAATTATTCTTGTCAGGTTATTATGTT
CGAGATCAATTTAAAGAAGATGCGATTCTTGAGCTTTCGTTAGAAGACAA
GGAGAAAATGGATATGTATAGTTTGTTTCACTATCGATTGTTTGGTTTGA
AAAAAATTGTTCTGAAATCGCTAACTAAAGTGATGGAGCTAGATGTTAAG
GTGAGTGTTTTTTTTTAAACGGGTTGAATACATAGCTGTCGATTCCTTCC
TCCAAATTTCCACATTATTTTCGCATTTCCGAGAGGTGTGATGAAAGAAT
CAGGGTTTTTTAAAAAAATTTGGGACGAAAATTTGTAACGAAAAATTTCA
CTATTTCACCAAAAAAATGTATTAATTAATCCGGTTTATTACTCCCGTAA
CATTTATCAAATTTTTTTTCTTCCACTTCCCTGCAACATACCCAGCAAGC
ACAAAACGTTGTTTTAACGTCCAAATAACGTTATTTGGACGTTATGAATG
TCAAATGGACGTTGATACGACGTCGAGTGCCGACTGGGTATGCTAATGAA
ACAATCCATAGTAAAAAGGTAACCAGTTGGCACACAACGTTGTTTCAACG
TTCATCTAATGTTCACAACGTCCATATAACGTTAGATGAACGTTGAAGCA
ACGTTGTTTGCCATCTGGGAAAGCATGCGGTGCGAAATGTTATGGGTTCA
ATCCCCGCTCAGGTCCAAAAGTACAAAAATGGTACTTGATGTCTCTCTAC
TTGACGCTCATTAATTAAAGAGAAGAATCGAGGGTAAGTGAAGCAATCCA
GGGAGAAAGGGTGGCAGCCTCCCCTACCTTTGGGTAGACAGCTATCGAAC
GAGGAGCCGTTCCAGCGGCCGAAGACCTTGACAAACAGCCGAAGACATGC
TTAGACTGTTGAGAATCTAAATGTAGCATAGCAGATCTTCAGTTTTTAAA
AATCAAATTATTCAAACTGTATTGGTTATCATACTGTTGAAGTTAAATAT
TTTTTTGAGTTGAAAAAAGCGCGACTGTTTTCGCAGCGTCCTACTCAGAG
TCTGATTCTTAAGACTTTATTACGTTTCCCAGCTGGCACACAACGTTGTT
TCAACGTTTTTCTAACATTCACAACGTCCATATAACGTTAGATAAACGTT
GAAACAACGTTGTGTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCAGCTGGCACACAACGTTGTTTCAACGTTTTTCTAACATTCACA
ACGTCCATATAACGTTAGATAAACGTTGAAACAACGTTGTGGGCCAGCTG
GGTTAACTATTCGTTTTCTAAACTAGGTTTGCCAATCATTTCCACGATTA
AAGAAATCCATTGAGGAAGAATGGCTCATACCGGCACACCTTCAATTATA
TTTACACCATGGAAAAGAGATTCTGGAAGAGAAATCTTTCCTGGATGTCT
TTATAGAGGGCGCTACAGAGGCGGAACAAGATGACGGCAAGTTGGAACTC
AATTTGATATCAAAAACTCCTCAAAATTTGACTGTAATACTGGTGCTACC
AGAATATATGCAAGACGTAGGTCAGTAGGAATCATTTTCAATAAAAAGCT
TGATCTTAGGCAAAAATAAAGAAATGTAGCGTTTCCGGAAACCGGCCGGG
TGAAAAATTTTTTCTCACCCGGCCGCAGACTTTCGTTTCATTTCGTTGAT
ACATTAGTATTCAGGGTTTACTTCATACTGTTCATACATAAAAGTTATCT
TTAAAGTTATCAAAAATAGCAACAAAAACACTTTCTTTCTATTTTTCGCC
TTATTAAAAGGGAACAGAAACTTCTGACTTCGGGTAAAAGATTTAGTTGC
GGATAAAGAATTCAAGAAAAAGCTTTGTCAGATGATAAAATGTCGGAGAA
TTTTTGCAATTGAAAAAAAATTGTCGAATTCCACTTGGAAGCAGATCCTT
TTAGCTCTATAGAAACAGTTTTTTCTTAAATTTATCAACAAATTTTTTCC
AAATATTTCCTACAATTGTCAAATCGAATTTAGGTCGAAATCTATTTTTC
CAAATTAATTAGTGAATTTCAATTTAATGTTAAAAAGCTTTTTCGGCCAT
CCAATAATTTGTATCCCCCGCCCGCCAAAATGTATTCTTAAAAGCTTTTT
TTCGTATGCGTAACAATATATAATTTTCTCTTTCGCCTTTTCCAGGGATA
CCTACGGAAATCTCTATGCCCGAAACTTCATCGATCAAGGACGTTGAAAA
AACATTAACAGAAGAAATCTCTTTACCAATATCCTTATACACTTCATCCC
AACCATACAATGAACTTTTATACATACGAAAAAGAATATTATTATACCAG
CTTAAATCGTCAAATGAGGACGCTATNAACGAGAGAGAACATTATTATAC
CAGCTTAAACCGTTAAATGAGGACGCTATTGTAATGTACGCGTATCGAAA
AATTCATTTAGCGATATACAGCTGTAAGAAGTGCAATAGTGAACAGGTGC
CATTAGTCGAGACGTCGTTCGCCTTACAAGGGCAATTAACAGTGAAGGAT
GTTGTTCACACGTTTATTAAGAATCAGAATGCCGAAGGGCATTTATTATA
TTGCTGTGATAACACAAAAGAGTCACAGTATAAGCTTTCAGACATGAACT
CGAAAAGTATTGAACTGAGTACAAACCTTATTGATATACCGGGTGACTCC
GTACTGANGAAAGTATCAAACTGAGTACGAACCTTATTGATATACCGGGT
GATTCCGTACTGAGTTTCGAACCCGAACCAGTGAACGTTGAAGATGTACA
AGTGGGATCACCCATAAAATGTGTTTTGATTTGATATGGATTTTTTCAAT
ATAGCTGGGTGTCCGACAAAGTACGAGCCTTGGATCACCCGTACAATGTG
TTTTGATGTGACATGGATTTTTTTTTCAATATGGCTGGGTGTCCAACAAA
GTACGAACGTTAAAGATAAACCGGGCGATTCCGTACCGAGTTTACAACTC
GAACCAGTGGGATCACCCGTACAACGTGTTTTGATGTGATATGGATTTCT
AACAAAGGGTGTCTAACAAAGTACGAACGTTAAAGATATACCGGTCGATT
CCGTACCGAGTTTCCAACTCGAACCAGTGGGATCACCCGTACAACGTGTT
TTGATGTAATATGGATTTCTAGCAAAGGGTGTCCAACAAAGTACGAACGT
TAAAGATATACCGGGCGATTCCGTACCGAGTTTCCAACTCGAACCAGTGG
GATCACCCGTACAACGTGTTTTGATGTAATATGGATTTCTAGCAAAGGGT
GTCCAACAAAGTACGAACGTTAAAGATATACCGGGCGATTCCGTGCCGAG
TTTTCAACTCGAACAAGTGGGATCACATGTTAAATATGTTTTGATGTGAA
TTTTTAAATGGATTTCGTCTAGTTTTTGCTATATTTTGATTTGTCGTGAT
TTTTTTTATATATTAGCGGTAAAGTTACTATAGAGCCACACCTTGATATT
GATTAAACCTGAGATTTCGTACAATGTTATCAATTTATACCAGTATGGTC
TCTCATTAGTTTTCAAATTGATACTTCATTTAACTATATCTTTC

Coding sequence (CDS) from alignment at scaffold_233:38875..52718-

>TCONS_00053622 ID=TCONS_00053622|Name=TCONS_00053622|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_233:38875..52718- (Clytia hemisphaerica)
GGATACCTACGGAAATCTCTATGCCCGAAACTTCATCGATCAAGGACGTT
GAAAAAACATTAACAGAAGAAATCTCTTTACCAATATCCTTATACACTTC
ATCCCAACCATACAATGAACTTTTATACATACGAAAAAGAATATTATTAT
ACCAGCTTAAATCGTCAAATGAGGACGCTATNAACGAGAGAGAACATTAT
TATACCAGCTTAAACCGTTAAGTTTGCCAATCATTTCCACGATTAAAGAA
ATCCATTGAGGAAGAATGGCTCATACCGGCACACCTTCAATTATATTTAC
ACCATGGAAAAGAGATTCTGGAAGAGAAATCTTTCCTGGATGTCTTTATA
GAGGGCGCTACAGAGGCGGAACAAGATGACGGCAAGTTGGAACTCAATTT
GATATCAAAAACTCCTCAAAATTTGACTGTAATACTGGTGCTACCAGAAT
ATATGCAAGACGTAGTATAGTTTATCATATCGCTGGTTCGAATTACGACA
CCCACGCTACAAAAGACTGCACTTGAACGAAGAACATACGTCCGTCCTTT
TAGAACAATTATTCTTGTCAGGTTATTATGTTCGAGATCAATTTAAAGAA
GATGCGATTCTTGAGCTTTCGTTAGAAGACAAGGAGAAAATGGATATGTA
TAGTTTGTTTCACTATCGATTGTTTGGTTTGAAAAAAATTGTTCTGAAAT
CGCTAACTAAAGTGATGGAGCTAGATGTTAAGATGGAAGAATTAAGACAA
ATCATTTTTCAAAAGGGATACCTACGGAAATCTCTATGCCCGAAACTTCA
TCGATCAAGGACGTTGAAAAAACATTAACAGAAGAAATCTCTTTACCAAT
ATCCTTATACACTTCATCCCAACCATACAATGAACTTTTATACATACGAA
AAAGAATATTATTATACCAGCTTAAATCGTCAAATGAGGACGCTATNAAC
GAGAGAGAACATTATTATACCAGCTTAAACCGTTAAGTTTGCCAATCATT
TCCACGATTAAAGAAATCCATTGAGGAAGAATGGCTCATACCGGCACACC
TTCAATTATATTTACACCATGGAAAAGAGATTCTGGAAGAGAAATCTTTC
CTGGATGTCTTTATAGAGGGCGCTACAGAGGCGGAACAAGATGACGGCAA
GTTGGAACTCAATTTGATATCAAAAACTCCTCAAAATTTGACTGTAATAC
TGGTGCTACCAGAATATATGCAAGACGTAGTATAGTTTATCATATCGCTG
GTTCGAATTACGACACCCACGCTACAAAAGACTGCACTTGAACGAAGAAC
ATACGTCCGTCCTTTTAGAACAATTATTCTTGTCAGGTTATTATGTTCGA
GATCAATTTAAAGAAGATGCGATTCTTGAGCTTTCGTTAGAAGACAAGGA
GAAAATGGATATGTATAGTTTGTTTCACTATCGATTGTTTGGTTTGAAAA
AAATTGTTCTGAAATCGCTAACTAAAGTGATGGAGCTAGATGTTAAGATG
GAAGAATTAAGACAAATCATTTTTCAAAAGGGATACCTACGGAAATCTCT
ATGCCCGAAACTTCATCGATCAAGGACGTTGAAAAAACATTAACAGAAGA
AATCTCTTTACCAATATCCTTATACACTTCATCCCAACCATACAATGAAC
TTTTATACATACGAAAAAGAATATTATTATACCAGCTTAAATCGTCAAAT
GAGGACGCTATNAACGAGAGAGAACATTATTATACCAGCTTAAACCGTTA
AGTTTGCCAATCATTTCCACGATTAAAGAAATCCATTGAGGAAGAATGGC
TCATACCGGCACACCTTCAATTATATTTACACCATGGAAAAGAGATTCTG
GAAGAGAAATCTTTCCTGGATGTCTTTATAGAGGGCGCTACAGAGGCGGA
ACAAGATGACGGCAAGTTGGAACTCAATTTGATATCAAAAACTCCTCAAA
ATTTGACTGTAATACTGGTGCTACCAGAATATATGCAAGACGTAGTATAG
TTTATCATATCGCTGGTTCGAATTACGACACCCACGCTACAAAAGACTGC
ACTTGAACGAAGAACATACGTCCGTCCTTTTAGAACAATTATTCTTGTCA
GGTTATTATGTTCGAGATCAATTTAAAGAAGATGCGATTCTTGAGCTTTC
GTTAGAAGACAAGGAGAAAATGGATATGTATAGTTTGTTTCACTATCGAT
TGTTTGGTTTGAAAAAAATTGTTCTGAAATCGCTAACTAAAGTGATGGAG
CTAGATGTTAAGATGGAAGAATTAAGACAAATCATTTTTCAAAAGGGATA
CCTACGGAAATCTCTATGCCCGAAACTTCATCGATCAAGGACGTTGAAAA
AACATTAACAGAAGAAATCTCTTTACCAATATCCTTATACACTTCATCCC
AACCATACAATGAACTTTTATACATACGAAAAAGAATATTATTATACCAG
CTTAAATCGTCAAATGAGGACGCTATNAACGAGAGAGAACATTATTATAC
CAGCTTAAACCGTTAAGTTTGCCAATCATTTCCACGATTAAAGAAATCCA
TTGAGGAAGAATGGCTCATACCGGCACACCTTCAATTATATTTACACCAT
GGAAAAGAGATTCTGGAAGAGAAATCTTTCCTGGATGTCTTTATAGAGGG
CGCTACAGAGGCGGAACAAGATGACGGCAAGTTGGAACTCAATTTGATAT
CAAAAACTCCTCAAAATTTGACTGTAATACTGGTGCTACCAGAATATATG
CAAGACGTAGTATAGTTTATCATATCGCTGGTTCGAATTACGACACCCAC
GCTACAAAAGACTGCACTTGAACGAAGAACATACGTCCGTCCTTTTAGAA
CAATTATTCTTGTCAGGTTATTATGTTCGAGATCAATTTAAAGAAGATGC
GATTCTTGAGCTTTCGTTAGAAGACAAGGAGAAAATGGATATGTATAGTT
TGTTTCACTATCGATTGTTTGGTTTGAAAAAAATTGTTCTGAAATCGCTA
ACTAAAGTGATGGAGCTAGATGTTAAGATGGAAGAATTAAGACAAATCAT
TTTTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033832XLOC_033832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053622-exon-scaffold_233-1575043694:52291..52718TCONS_00053622-exon-scaffold_233-1575043694:52291..52718Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1575043694:45694..46039TCONS_00053622-exon-scaffold_233-1575043694:45694..46039Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1575043694:45129..45307TCONS_00053622-exon-scaffold_233-1575043694:45129..45307Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1575043694:42269..42535TCONS_00053622-exon-scaffold_233-1575043694:42269..42535Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1575043694:40899..41142TCONS_00053622-exon-scaffold_233-1575043694:40899..41142Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1575043694:38875..40273TCONS_00053622-exon-scaffold_233-1575043694:38875..40273Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1510915933:52291..52718TCONS_00053622-exon-scaffold_233-1510915933:52291..52718Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1510915933:45694..46039TCONS_00053622-exon-scaffold_233-1510915933:45694..46039Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1510915933:45129..45307TCONS_00053622-exon-scaffold_233-1510915933:45129..45307Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1510915933:42269..42535TCONS_00053622-exon-scaffold_233-1510915933:42269..42535Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1510915933:40899..41142TCONS_00053622-exon-scaffold_233-1510915933:40899..41142Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1510915933:38875..40273TCONS_00053622-exon-scaffold_233-1510915933:38875..40273Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1491911889:52291..52718TCONS_00053622-exon-scaffold_233-1491911889:52291..52718Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1491911889:45694..46039TCONS_00053622-exon-scaffold_233-1491911889:45694..46039Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1491911889:45129..45307TCONS_00053622-exon-scaffold_233-1491911889:45129..45307Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1491911889:42269..42535TCONS_00053622-exon-scaffold_233-1491911889:42269..42535Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1491911889:40899..41142TCONS_00053622-exon-scaffold_233-1491911889:40899..41142Clytia hemisphaericaexon
TCONS_00053622-exon-scaffold_233-1491911889:38875..40273TCONS_00053622-exon-scaffold_233-1491911889:38875..40273Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053622-proteinTCONS_00053622-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:38875..52718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.312902	0	0	0	5.01472e-10	0.904529	1.73388	2.00412	1.62776	5.95883e-05	1.69371	0.043386	0.143309	0.654687	0	1.34352	0	0	0	0.263325	0.872062	0	0	1.78809	0.83526	1.88346	0.416874	0.458013	1.12377
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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