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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053628 ID=TCONS_00053628|Name=TCONS_00053628|organism=Clytia hemisphaerica|type=transcript|length=3784bpRun BLAST on NCBI protein sequence of TCONS_00053628-protein >TCONS_00053628-protein ID=TCONS_00053628-protein|Name=TCONS_00053628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=730bp MDAFEYQSDSQGKICVTATSGVALASGLYHYLKYYCNIHVSWSGNQLDLARun BLAST on NCBI transcript from alignment at scaffold_233:81003..156367- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053628 ID=TCONS_00053628|Name=TCONS_00053628|organism=Clytia hemisphaerica|type=transcript|length=75365bp|location=Sequence derived from alignment at scaffold_233:81003..156367- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:81003..156367- >TCONS_00053628 ID=TCONS_00053628|Name=TCONS_00053628|organism=Clytia hemisphaerica|type=CDS|length=21930bp|location=Sequence derived from alignment at scaffold_233:81003..156367- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00053628 vs. Swiss-Prot (Human)
Match: ANAG (Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2) HSP 1 Score: 551.206 bits (1419), Expect = 3.511e-179 Identity = 287/679 (42.27%), Postives = 408/679 (60.09%), Query Frame = 1
Query: 280 NMDAFEYQSDSQGKICVTATSGVALASGLYHYLKYYCNIHVSWSGNQLDLASKLPVVEQKVKKTSSDRFRYYQNVCTVSYSSAFWDWARWEKEIDWMALQGINLPLAFTGQEAIWEMVYKEMGLTEPELAEHFSGAAFFAWQRMGNLDGWGGPLPTAWNXXXXXXXXXXXXRMRSFGMTPVLPGFAGHVPKALVFRLFPQAKYTNSSVWNGFGDQYRTA-LLDPLDPLFKKVGVAFIQKQIEIYDSTDHVYNGDVFNEMSPPSSDPKYVSGISAAIYDTMKTADPNAIWLMQAWQF--LSGFWKDDLIQAWLTAVPLGRLVLLDLASEILPIYKRTKGYFGHPFLWCMLENYGGNTRLYGSSQDVIDGIQSTRINYADQMVGIGSTPEGIDQNPINFELLYEMTYRGNEKIDRYDWMHNYIKRRYNDKKGVSLAAWDLLWKEVYDAHGVSSGGSPQGRVTNQKPYLTTKWPTMLWYNPQDVHEALKKLVDAAETLPMTDALRHDLAKIASTFIEDLLPGTYAMFIDAYQKRNYIEMVSNSNALI-EGLKDMDQVLAADRYSLLGNWIESAKKYGADVAEKKNLEFNARNQITLWGPNGQIEDYANKNWAGLISSYYMQRWASFTKYLLECYASKKPYDDKIFKERLMDFEKLWNEENQAFPVKPEGDILQISQTILAKY 2304
+D + ++ V ++GVA A+GL+ YL+ +C HV+WSG+QL L LP V ++ + + +R+RYYQNVCT SYS +WDWARWE+EIDWMAL GINL LA++GQEAIW+ VY +GLT+ E+ E F+G AF AW RMGNL W GPLP +W+ KQL LQ +L +MRSFGMTPVLP FAGHVP+A V R+FPQ T W F Y + LL P DP+F +G F+++ I+ + TDH+Y D FNEM PPSS+P Y++ + A+Y+ M D A+WL+Q W F FW I+A L AVP GRL++LDL +E P+Y RT + G PF+WCML N+GGN L+G+ + V G ++ R+ MVG G PEGI QN + + L+ E+ +R + D W+ ++ RRY + AAW LL + VY+ G + G + + ++P L T +WYN DV EA + L+ +A +L + A R+DL + +++L+ Y AY + ++ L E L +D+VLA+D LLG+W+E A+ AE E N+R Q+TLWGP G I DYANK AGL+++YY RW F + L++ A P+ F + + E+ + Q +P +P GD + +++ I KY
Sbjct: 61 GLDTYSLGGGGAARVRVRGSTGVAAAAGLHRYLRDFCGCHVAWSGSQLRLPRPLPAVPGELTEATPNRYRYYQNVCTQSYSFVWWDWARWEREIDWMALNGINLALAWSGQEAIWQRVYLALGLTQAEINEFFTGPAFLAWGRMGNLHTWDGPLPPSWHIKQLYLQHRVLDQMRSFGMTPVLPAFAGHVPEA-VTRVFPQVNVTKMGSWGHFNCSYSCSFLLAPEDPIFPIIGSLFLRELIKEF-GTDHIYGADTFNEMQPPSSEPSYLAAATTAVYEAMTAVDTEAVWLLQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLVLDLFAESQPVYTRTASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPNSTMVGTGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTSFAARRYGVSHPDAGAAWRLLLRSVYNCSGEACRGHNRSPLV-RRPSLQMN--TSIWYNRSDVFEAWRLLLTSAPSLATSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELASLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLWGPEGNILDYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKNVFQLEQAFVLSKQRYPSQPRGDTVDLAKKIFLKY 734 The following BLAST results are available for this feature:
BLAST of TCONS_00053628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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