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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053641 ID=TCONS_00053641|Name=TCONS_00053641|organism=Clytia hemisphaerica|type=transcript|length=816bp
GACGTATCCAACGAGTTTTTTCACAATACTTGATACGAGAACATTGGTCA
TCacatttttttgtgatttggaGTTAACTTATCATGAAGTTTATCAGTTT
TCTGGTTCTATTCATCACCTTATACCGTTTCTCAGAAGggaaaaaacGTC
CAAAGAAGCATCAATGTGAGTGTCCACCAGGTCCTCCAGGTCCACCCGGC
CCACCTGGGGAACCCGGAATTTCGGGAGCAAGAGGTCCACTAGGCACTCC
TGGAGTCCCTGGGGAACCTGGAATGTCAGGACCAGTCGGCCGCCCAGGTG
AAATGGGCCTTATGGGGCCGATGGGAGCACCCGGTATGCCAGGAGATATC
GGAGGAGTTGGACCACGAGGTCTTGCTGGTGTAGTAGGTGCACCAGGAAA
ACCAGGGACCTGTGATGCTAGTTCTGGCTGCCCACAAATACCGCCTGTTC
CGACTGATATCTGACCTAAAGAGACTCGTAGTACTTCAACAAATACAACC
AATACAGCTTCAAACTCGGACACAGGCCCTTGGTTcgattttttatgatt
ctgatacccggggggggggcacttaggtaaaaatggatgatgggtatgtg
cggacagtaagggtcggttttttcacctttcaaagtctctctaagggtcg
gaaaaatcagaaagttttaaattcggaaaattcaggatttttaggaaatt
ttttgatttccagagaaaaaatgtaataaagtctctctaagggtatgact
tttttcaaaaatcgaaaaaaaaaattcaaaaagtctctctaagggtcacc
ttttcagcaaaaatca Run BLAST on NCBI protein sequence of TCONS_00053641-protein >TCONS_00053641-protein ID=TCONS_00053641-protein|Name=TCONS_00053641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MKFISFLVLFITLYRFSEGKKRPKKHQCECPPGPPGPPGPPGEPGISGAR
GPLGTPGVPGEPGMSGPVGRPGEMGLMGPMGAPGMPGDIGGVGPRGLAGV
VGAPGKPGTCDASSGCPQIPPVPTDI Run BLAST on NCBI transcript from alignment at scaffold_233:202828..204719- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053641 ID=TCONS_00053641|Name=TCONS_00053641|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at scaffold_233:202828..204719- (Clytia hemisphaerica)
GACGTATCCAACGAGTTTTTTCACAATACTTGATACGAGAACATTGGTCA
TCACATTTTTTTGTGATTTGGAGTTAACTTATCATGAAGTTTATCAGTTT
TCTGGTTCTATTCATCACCTTATACCGTTTCTCAGAAGGTACGTTGTTAT
GGTTTTATTTTACACCCCTGTCTCAGTGACCCGGTGATGATGTTCTATCC
GATAGAGAAATAAAGGACAAAGACGAACGCCGTTGGCAATGGTCTATTGT
TTTTGATGGTTGGGGATTACAAATTCTTTTGTTTTTGTGGCCTAAACATT
CAATCAGGATTCTCAAAATATTTGGTAATAATCCATTCTCCGTTGGGAAT
TGAGCTTAGTATTTAGTAGAGGTTTTTTTAACGTTACCCCAATCATTACA
CACCCGTGTTAAAAACCCGCTGGGACCCCAGCCCTACTACAAAAATATGC
TCAAAATTTCGTCCCCGACGGTTGATAAATATCCAACAATTTCAGCCCCG
TGTGAAAATGACTTTGATTTCATCCTCACTTAAAATCCAATCGAAAAATT
TGCTCTCCAAAACCATCCCCAATGGAAGTTTTGGGCTGGGAACAATAGAA
TTTCTATCCCTATTGGGATTTCGATAGAGATTTTCATCCCCAAAAAACTT
TCACCTGGGCTTTGAGACGGAGTGTATCAATATATAAACCCTAGACAGTA
GAAATCATTAGTGAATAGGCTTACCAAAGGTTTATAGAATAAGTAAAAAT
CCTCATAATCTTGCAGTTAAGATCCCTAAAGAATATTTTCAGTCATCATT
TTCTTTACACAAAGATGGGCCTAGCATACTTTAAAGTTCCTCCAGACTAA
TACTATATTTCATATTTTTAGGGAAAAAACGTCCAAAGAAGCATCAATGT
GAGTGTCCACCAGGTCCTCCAGGTCCACCCGGCCCACCTGGGGAACCCGG
AATTTCGGGAGCAAGAGGTCCACTAGGCACTCCTGGAGTCCCTGGGGAAC
CTGGAATGTCAGGACCAGTCGGCCGCCCAGGTGAAATGGGCCTTATGGGG
CCGATGGGAGCACCCGGTATGCCAGGAGATATCGGAGGAGTTGGACCACG
AGGTCTTGCTGGTGTAGTAGGTGCACCAGGAAAACCAGGTGAGATTACGT
TGTTTAAACGTTCATCTAATGTTATCTTACTTTACGATTCAAATTCAACC
TAGACTTAACATGTAATACATATCTGAAGCATCAATTGACATTTTTGTAG
AAGTTTTGAGTCATAGTGGGGGAGGAGGGAATAATTAGCAATTGAAATTG
AAATTTTGTTCAAATATTCGAATTTATAAATGTTTCCTTTTCAAGGTTTC
AACGTTTAGATAAAAAATTGCTAGCGTCAGGAAAGCTCCAGGTTAAACTC
TTCGCGGAATTAGGCAAGGCAAACCTTATATACCCTGTATCGTCCTATCT
CGTATAAAAACAATTATATTTTCTATTTCAGGGACCTGTGATGCTAGTTC
TGGCTGCCCACAAATACCGCCTGTTCCGACTGATATCTGACCTAAAGAGA
CTCGTAGTACTTCAACAAATACAACCAATACAGCTTCAAACTCGGACACA
GGCCCTTGGTTCGATTTTTTATGATTCTGATACCCGGGGGGGGGGCACTT
AGGTAAAAATGGATGATGGGTATGTGCGGACAGTAAGGGTCGGTTTTTTC
ACCTTTCAAAGTCTCTCTAAGGGTCGGAAAAATCAGAAAGTTTTAAATTC
GGAAAATTCAGGATTTTTAGGAAATTTTTTGATTTCCAGAGAAAAAATGT
AATAAAGTCTCTCTAAGGGTATGACTTTTTTCAAAAATCGAAAAAAAAAA
TTCAAAAAGTCTCTCTAAGGGTCACCTTTTCAGCAAAAATCA Coding sequence (CDS) from alignment at scaffold_233:202828..204719- >TCONS_00053641 ID=TCONS_00053641|Name=TCONS_00053641|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_233:202828..204719- (Clytia hemisphaerica)
GGACCTGTGATGCTAGTTCTGGCTGCCCACAAATACCGCCTGTTCCGACT
GATATCTGAGGAAAAAACGTCCAAAGAAGCATCAATGTGAGTGTCCACCA
GGTCCTCCAGGTCCACCCGGCCCACCTGGGGAACCCGGAATTTCGGGAGC
AAGAGGTCCACTAGGCACTCCTGGAGTCCCTGGGGAACCTGGAATGTCAG
GACCAGTCGGCCGCCCAGGTGAAATGGGCCTTATGGGGCCGATGGGAGCA
CCCGGTATGCCAGGAGATATCGGAGGAGTTGGACCACGAGGTCTTGCTGG
TGTAGTAGGTGCACCAGGAAAACCAGATGAAGTTTATCAGTTTTCTGGTT
CTATTCATCACCTTATACCGTTTCTCAGAAGGGACCTGTGATGCTAGTTC
TGGCTGCCCACAAATACCGCCTGTTCCGACTGATATCTGAGGAAAAAACG
TCCAAAGAAGCATCAATGTGAGTGTCCACCAGGTCCTCCAGGTCCACCCG
GCCCACCTGGGGAACCCGGAATTTCGGGAGCAAGAGGTCCACTAGGCACT
CCTGGAGTCCCTGGGGAACCTGGAATGTCAGGACCAGTCGGCCGCCCAGG
TGAAATGGGCCTTATGGGGCCGATGGGAGCACCCGGTATGCCAGGAGATA
TCGGAGGAGTTGGACCACGAGGTCTTGCTGGTGTAGTAGGTGCACCAGGA
AAACCAGATGAAGTTTATCAGTTTTCTGGTTCTATTCATCACCTTATACC
GTTTCTCAGAAGGGACCTGTGATGCTAGTTCTGGCTGCCCACAAATACCG
CCTGTTCCGACTGATATCTGAGGAAAAAACGTCCAAAGAAGCATCAATGT
GAGTGTCCACCAGGTCCTCCAGGTCCACCCGGCCCACCTGGGGAACCCGG
AATTTCGGGAGCAAGAGGTCCACTAGGCACTCCTGGAGTCCCTGGGGAAC
CTGGAATGTCAGGACCAGTCGGCCGCCCAGGTGAAATGGGCCTTATGGGG
CCGATGGGAGCACCCGGTATGCCAGGAGATATCGGAGGAGTTGGACCACG
AGGTCTTGCTGGTGTAGTAGGTGCACCAGGAAAACCAGATGAAGTTTATC
AGTTTTCTGGTTCTATTCATCACCTTATACCGTTTCTCAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053641-exon-scaffold_233-1575043694:204582..204719 | TCONS_00053641-exon-scaffold_233-1575043694:204582..204719 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1575043694:203582..203848 | TCONS_00053641-exon-scaffold_233-1575043694:203582..203848 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1575043694:202828..203238 | TCONS_00053641-exon-scaffold_233-1575043694:202828..203238 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1510915933:204582..204719 | TCONS_00053641-exon-scaffold_233-1510915933:204582..204719 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1510915933:203582..203848 | TCONS_00053641-exon-scaffold_233-1510915933:203582..203848 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1510915933:202828..203238 | TCONS_00053641-exon-scaffold_233-1510915933:202828..203238 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1491911889:204582..204719 | TCONS_00053641-exon-scaffold_233-1491911889:204582..204719 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1491911889:203582..203848 | TCONS_00053641-exon-scaffold_233-1491911889:203582..203848 | Clytia hemisphaerica | exon |
| TCONS_00053641-exon-scaffold_233-1491911889:202828..203238 | TCONS_00053641-exon-scaffold_233-1491911889:202828..203238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:202828..204719 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008160 | Collagen |
Blast
The following BLAST results are available for this feature:
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