TCONS_00053644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053644
Unique NameTCONS_00053644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053644 ID=TCONS_00053644|Name=TCONS_00053644|organism=Clytia hemisphaerica|type=transcript|length=802bp
TACAACAACCTAACTTGACCAACAAACAGTCAGCTGTGGGTATCAAGAGA
AAGAGATTTTCTCAGATATGAGGATGATTCAAAGCCTGTTTCTTTTGGGA
ACATTATGGTGCTTTGCAAAAGGATTGGCTCCCCCAAGTCCTCAATGCAA
CTGTCCGCCCGGCCCTCCAGGGCCCCCAGGACCACCAGGGTTGCCTGGAT
TTGCAGGTGACTCAGGACCAGTTGGTCTACCAGGGCATCCCGGAAAACCT
GGACCTGTAGGACTCGATGGTCTTCCTGGTGATAGAGGCCTCATGGGTCC
AAGAGGTTACCCAGGATTCCCAGGAGAAATTGGCATTATCGGAGCTCCAG
GGATGCCTGGTCCAGCGGGTGAGCCAGGACGACCAGGGACGTGTGACGCT
TCCGATTGTTCCCGACCACCCATTCCCCCTTCGCACCACGGCAATCAGGG
ACACGTCGAAGCTAACCCATAATGATGCGACGATTATAACatatcttatc
ggagttttttatttttcttaaaaagcgatgcattgtgggattgtttcggg
agtattacaatagaaatctcttaggaactccttgagggaattctattgta
atagaCCCctaaaacaatcccacaatgcatcgctgatttagaaaaatcaa
aaactccgataaggtctatcaCTCGTTAATGATATGAAAATTTATTACAC
ATTTGTatcataaaatttttgaattatctcgatttttttttaagaatgaa
aCCTTTAAACCGCTAGAAAAGTAGGTAGTTCTTTCGTGATCAtgtataga
aa
Run BLAST on NCBI

protein sequence of TCONS_00053644-protein

>TCONS_00053644-protein ID=TCONS_00053644-protein|Name=TCONS_00053644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MRMIQSLFLLGTLWCFAKGLAPPSPQCNCPPGPPGPPGPPGLPGFAGDSG
PVGLPGHPGKPGPVGLDGLPGDRGLMGPRGYPGFPGEIGIIGAPGMPGPA
GEPGRPGTCDASDCSRPPIPPSHHGNQGHVEANP
Run BLAST on NCBI

transcript from alignment at scaffold_233:207253..210007-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053644 ID=TCONS_00053644|Name=TCONS_00053644|organism=Clytia hemisphaerica|type=transcript|length=2755bp|location=Sequence derived from alignment at scaffold_233:207253..210007- (Clytia hemisphaerica)
TACAACAACCTAACTTGACCAACAAACAGTCAGCTGTGGGTATCAAGAGA
AAGAGATTTTCTCAGGTAATAAACTTTTAATTTCTCTTGTGATTTTCTTA
TGGCTTCCAAGCTCATCTCTACTTCTTAAACCTGAAAATTACGAAATACA
TAAGAACCCACGAGGCTTAGCTATAATTTACTTGTCCTCAGATTAACATG
TTTGCTTTTCTTTCCATTTTTAGATATGAGGATGATTCAAAGCCTGTTTC
TTTTGGGAACATTATGGTGCTTTGCAAAAGGTTAGCATACTTAAAACGAT
TTATTTCAGACAAAAGATCCTTTTTGTACAAATGTACAAATTTTATCTAA
ATTTATGGCAAAATGTTAACTCGCAAATTGGAATAATGTTTTAAAAGATG
TTAACTTTCGCGGATCAGTAGGACAAAATTTGAACTTCCCATTTGCCAAA
GTAAGACTTAAAGGTTTTGTTTTTAAATAAGAATGATATTGTTTGCTTAC
TCATCAATTTTAATTCACAAGCTTTTTGATATTGAATTTTTACGGATGTG
GAGCAAAATTGGTCAGAAAGAGGAAAAGAAGGACATTTTATGCTTATATC
AGCACAATATAACAATAGGGAAACACTGTCCTGACATGAAATATGTGTCT
GATATGAAACGGAAACACTTATGTGAAAACAAAACCTTTTAAGAGAGGGC
AAGAATCATTTTGTCTTATAAGGTGTACTTCCATAGATATAAAAAAATCA
GAATAAACCTTTTCATAAATTACGTCACGAACATCACTTGCCTCGTTTTC
AAACAATTACCAAGGTGATTATACCCCTTGAGACATTAAATGACATTTTT
ATGAAAAGAAAGTAGCTTTGATGAAATCCGCTGGGAGTTAATCACCATGG
CAATAAATTTCAAAACAAGGCAAGTGATGTTCGTGACGTAATTTATGAAA
AGGTCTATTGTATTCCATATTTTTAAAGAGGATTGTCATCTATCTCAATT
ACAGGATTGGCTCCCCCAAGTCCTCAATGCAACTGTCCGCCCGGCCCTCC
AGGGCCCCCAGGACCACCAGGGTTGCCTGGATTTGCAGGTGACTCAGGAC
CAGTTGGTCTACCAGGGCATCCCGGAAAACCTGGACCTGTAGGACTCGAT
GGTCTTCCTGGTGATAGAGGCCTCATGGGTCCAAGAGGTTACCCAGGATT
CCCAGGAGAAATTGGCATTATCGGAGCTCCAGGGATGCCTGGTCCAGCGG
GTGAGCCAGGACGACCAGGTATGTTTTACTGTAAACATAGTCCTTATAGA
AAACACTGGTCTGGAAGCTTATTGATTTAACTTTCTGTTAGTTTTTTACG
AAAATTGATTTGCTCAGTTTTTGACCACGTTACCAAGTACTCCTATTACT
ACCTTAAGGGAACTTTTTTTGGTAGGAACTAATTTTGGCGGGCAGCAAAT
ATCCTAAAAATTCTAATTTTGGTGGGAACTTATTTTGGCGAATAGTGATT
TTTTTTAATTTTGGCGGGAACTACAATCATGGTCGAAATATATTGAGATT
TTAGTGTATTTTAACGTTTTCAGAATTTAAAGTTCGGGCGAGAATTGCTA
TTTTAGCACTTCCACTTTCTTTCATTGAATATTTCGAATTTAGAGGGGTT
TGGTGGCTTCTAGGCTATATTCCAAGCCTTATTCGAGCAAATTTGAGCTT
TTAAATCCTCAAATCCTAAGGCTCTTAGTCTTAAGTCTCATGTTAAAACT
CAGAGTTAAAACTCTTCTTTCCAACTGTAGTTTAAGACGCTTAATAATCA
TTTGTGGTGTTTAAAATTTCGCCGGGAACTCCCCTTTGTCTCGAATATTT
TGTCCATGATTGTAATTTTGGCAAATGACAGCGTACATCTGTTCTATTTT
GCCTTATTTTGAGCAATTTTGATGATCTTCAGGGGTTATTTAGGCAAGGA
AACAAAAAATTTAATTTTGGCGGGATTTTATTTTGGCGAGGGAGCAAGTT
ATTTAATTTTGGCGGGAACTAATTTTGGCGAACTTCGTCTAAATTCGTCA
AATCCGCCAAAATTAGTTCCCGGCAAAAATAAGTTCCCTTAAGGTAATAT
TTTTAATACTAAGGATCATGATTGAATATTGCAGAAATTTAAGTTCCTGT
GGTTCCTCTTAATTGGGTCTCGTTTTTGGAGAAGGGAGTCACACATTAAC
CTTTGCAGAGTCTAGTGGGCTCAAGAGCCTCAGTATTTCCAATTTGCATA
GTTCTTCTTTTTTTTGTGAAAAGTGGACGTTTTTACATCTCGGTAGATTT
CATCTAAGGGTGATCGATAAACTTGATTTTATCTTTCAGGGACGTGTGAC
GCTTCCGATTGTTCCCGACCACCCATTCCCCCTTCGCACCACGGCAATCA
GGGACACGTCGAAGCTAACCCATAATGATGCGACGATTATAACATATCTT
ATCGGAGTTTTTTATTTTTCTTAAAAAGCGATGCATTGTGGGATTGTTTC
GGGAGTATTACAATAGAAATCTCTTAGGAACTCCTTGAGGGAATTCTATT
GTAATAGACCCCTAAAACAATCCCACAATGCATCGCTGATTTAGAAAAAT
CAAAAACTCCGATAAGGTCTATCACTCGTTAATGATATGAAAATTTATTA
CACATTTGTATCATAAAATTTTTGAATTATCTCGATTTTTTTTTAAGAAT
GAAACCTTTAAACCGCTAGAAAAGTAGGTAGTTCTTTCGTGATCATGTAT
AGAAA

Coding sequence (CDS) from alignment at scaffold_233:207253..210007-

>TCONS_00053644 ID=TCONS_00053644|Name=TCONS_00053644|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_233:207253..210007- (Clytia hemisphaerica)
GGACGTGTGACGCTTCCGATTGTTCCCGACCACCCATTCCCCCTTCGCAC
CACGGCAATCAGGGACACGTCGAAGCTAACCCATAAGATTGGCTCCCCCA
AGTCCTCAATGCAACTGTCCGCCCGGCCCTCCAGGGCCCCCAGGACCACC
AGGGTTGCCTGGATTTGCAGGTGACTCAGGACCAGTTGGTCTACCAGGGC
ATCCCGGAAAACCTGGACCTGTAGGACTCGATGGTCTTCCTGGTGATAGA
GGCCTCATGGGTCCAAGAGGTTACCCAGGATTCCCAGGAGAAATTGGCAT
TATCGGAGCTCCAGGGATGCCTGGTCCAGCGGGTGAGCCAGGACGACCAG
ATGAGGATGATTCAAAGCCTGTTTCTTTTGGGAACATTATGGTGCTTTGC
AAAAGGGACGTGTGACGCTTCCGATTGTTCCCGACCACCCATTCCCCCTT
CGCACCACGGCAATCAGGGACACGTCGAAGCTAACCCATAAGATTGGCTC
CCCCAAGTCCTCAATGCAACTGTCCGCCCGGCCCTCCAGGGCCCCCAGGA
CCACCAGGGTTGCCTGGATTTGCAGGTGACTCAGGACCAGTTGGTCTACC
AGGGCATCCCGGAAAACCTGGACCTGTAGGACTCGATGGTCTTCCTGGTG
ATAGAGGCCTCATGGGTCCAAGAGGTTACCCAGGATTCCCAGGAGAAATT
GGCATTATCGGAGCTCCAGGGATGCCTGGTCCAGCGGGTGAGCCAGGACG
ACCAGATGAGGATGATTCAAAGCCTGTTTCTTTTGGGAACATTATGGTGC
TTTGCAAAAGGGACGTGTGACGCTTCCGATTGTTCCCGACCACCCATTCC
CCCTTCGCACCACGGCAATCAGGGACACGTCGAAGCTAACCCATAAGATT
GGCTCCCCCAAGTCCTCAATGCAACTGTCCGCCCGGCCCTCCAGGGCCCC
CAGGACCACCAGGGTTGCCTGGATTTGCAGGTGACTCAGGACCAGTTGGT
CTACCAGGGCATCCCGGAAAACCTGGACCTGTAGGACTCGATGGTCTTCC
TGGTGATAGAGGCCTCATGGGTCCAAGAGGTTACCCAGGATTCCCAGGAG
AAATTGGCATTATCGGAGCTCCAGGGATGCCTGGTCCAGCGGGTGAGCCA
GGACGACCAGATGAGGATGATTCAAAGCCTGTTTCTTTTGGGAACATTAT
GGTGCTTTGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033837XLOC_033837Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053644-proteinTCONS_00053644-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053644-exon-scaffold_233-1575043694:209943..210007TCONS_00053644-exon-scaffold_233-1575043694:209943..210007Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1575043694:209728..209784TCONS_00053644-exon-scaffold_233-1575043694:209728..209784Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1575043694:208740..209003TCONS_00053644-exon-scaffold_233-1575043694:208740..209003Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1575043694:207253..207668TCONS_00053644-exon-scaffold_233-1575043694:207253..207668Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1510915933:209943..210007TCONS_00053644-exon-scaffold_233-1510915933:209943..210007Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1510915933:209728..209784TCONS_00053644-exon-scaffold_233-1510915933:209728..209784Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1510915933:208740..209003TCONS_00053644-exon-scaffold_233-1510915933:208740..209003Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1510915933:207253..207668TCONS_00053644-exon-scaffold_233-1510915933:207253..207668Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1491911889:209943..210007TCONS_00053644-exon-scaffold_233-1491911889:209943..210007Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1491911889:209728..209784TCONS_00053644-exon-scaffold_233-1491911889:209728..209784Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1491911889:208740..209003TCONS_00053644-exon-scaffold_233-1491911889:208740..209003Clytia hemisphaericaexon
TCONS_00053644-exon-scaffold_233-1491911889:207253..207668TCONS_00053644-exon-scaffold_233-1491911889:207253..207668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:207253..210007 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.245422	0.368848	0.207258	0.437165	0	0.12751	0.0852469	0.216247	0.253802	0.43766	0.501508	0.280024	0.288124	0.166489	0.316066	0.188621	0.902053	0.602516	0.936558	0.539362	2.79509	3.78696	30.1967	23.9409	36.3566	8.47758	3.08798	4.3253	2.21292	1.13755
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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