TCONS_00053647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053647
Unique NameTCONS_00053647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053647 ID=TCONS_00053647|Name=TCONS_00053647|organism=Clytia hemisphaerica|type=transcript|length=488bp
CAATAAAAAATGGGGAGAAAGTTCATTTATGAGCCAAACACAAAAGGTTA
tgaggaaatcaaaaagaatcaTTTCATTATTTGCTTTGATCCACAGGTTG
AACCATACCGCcaacattttctttgttgtgTCTGTAACAAAATTATTACA
CGGTTTATCGAATGTTTGAGCCATTGTAATTCTTCAAAGCACAAGAAAGA
AGTAGCTGGCAAATGGCGAAAGTTACAATCATTTGCATGCCAAAAATGTC
ACACTCAAGCACAGCTTTCAAACTTCACAGCTTTTTGTCAGTGGactgtt
ttgaaaaacaatcaAGCCTTAACGAAAGAAGATCATAACATAAGACTTGA
AATTCTCAAGAGGGTTGGAAAGACACTTCACAATGCTGGGCTGAAAGGTG
CATCAGTTTCTCTTTACGGATCATCAGACACTCTTCTTGGTTTCAAATAT
TCTGATGTCAACCTCCACATCACACTGAAGCATTTTAa
Run BLAST on NCBI

transcript from alignment at scaffold_233:243296..253734-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053647 ID=TCONS_00053647|Name=TCONS_00053647|organism=Clytia hemisphaerica|type=transcript|length=10439bp|location=Sequence derived from alignment at scaffold_233:243296..253734- (Clytia hemisphaerica)
CAATAAAAAATGGGGAGAAAGTTCATTTATGAGTAAGTATTAATTTAAGT
GACCTGGACAAAGAAAATTTAATGTTTATTAACAGCAACCCAAAAAAACA
TTATATATCAGTCAGCAACACAAAAATTAGGAGCTTTTTTCCTCATTGGG
TGCTGCTATAATGTAGTTTCAATCAGTGATCCCAACTTTCTTTTTGTTGG
ACCTACTTGGAGGTCCTATAAATTAACTCATGTCTGTTCCTTTGTTCTTT
TGTTGCCAGCTTTTCTCGGGATTGGCTCATTAGTTTTTTCTGATGGTCAA
TAATACAATACGCAAAATGTGACAGAGCCTGATTTTCGAAAAGAAATTCT
TTCCAGCCGAAAATGCTGGAAAAACCGGTATTTTGGAGGGGGTTTAACTA
AAGAATCCTGCATTTCTAAAAATAGACAAAAAGAACGACAAATTTCATAA
AAAACGACATATTTTGCCGTCCACAGCCCCGACCGACAGTCACTGTACCA
CCCCTAGCGATTCATTTCTCTTTGTTTATCACGGGAAATAACTACATGTG
GTCTAAAAGAACGACAAATTATGCATGCGTGTTACAATGCAGGATCCTTT
AGAGGAACAGACTGTTTGGCATTTTCTCAAGATTTCATCGTTACTTTTTT
CCGATTTTTTGCACAAAGATGCATATTTGAAGAAATGGCCAAAATTTGGC
TGATTTGGATTTTTGAGAAAAAATTTAATCCAGTGGAAAATGCCAGAAAT
ATGTTGGAAATTGCCGTTTTGCATTTTCAATTGAACTTTTTCCAATATAT
TTCTTTGTTTTTCACACAAATACGTTATTGATAACATTGCCAACCATCAA
GCATGATTCAATTGTCAATAAAAGTGATCGCTCTTTCTTCACAATCTTTT
CCATTATCGCTTTAAACTACCGTCAATTTCCATAACTCGAACCTACTCAA
CTCAATTATCTCCATAAACTGAAACATTTTTTCTGGTCTATTGAGGAGAT
CCTTCTTAGGCTATTTTGCGGTTAGTGTAAAACGCAGGTCGCAGGTCACA
GGTCACAGGNATTGAGGAGATCCTTCTTAGGCTATTTTGCGGTTAGTGTA
AAACGCAGGTCGCAGGTCACAGGTCGCAGGTCACAGGTCACAGGTCAGTG
ATGACAGGTTGACTCAGAATCAATGTCATTACAGAGGAAAATGTTTGGAA
AACACAAAGAATTATCAAAAACATAATTATCAAGCAATTTCATCCATATA
AAACCATTTCAAACATCAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCT
ATTCAATTGTCATTTTATAATATCTAAATAACATGTATTACTTTTTTGTA
ATTTAATGCGTTATGTATTGATGTTATGTTATGTATATGTTATGATTTCC
GGTCTGCACTTTGTTGACCTGTGACCTGTAACCTGTGACCTGCGACCTGT
GACCTGTGACCTGCGTTTTACACTAACCGGCTATTTTGTCTCTCTATAAC
TCGAATTTCAGAAACTCAAACAATTACAGATTATCCCCTGCACTCGACTA
TATTACACTTCCCTACTTGCTATAACTTTAAATCATCAGGTGGTCCAATC
AACGCTCCGGCTTGTTGATGCTAGACCAACTTGTGATACTACTTGGAATG
ATTATTTATCATTTTAGGCCAAACACAAAAGGTTATGAGGAAATCAAAAA
GAATCATTTCATTATTTGCTTTGATCCACAGGTAATTAAAATCTTGCCCT
TCATTGTCACTAGTTTATTTGATTGGTTTATTTGATTGGTCAGCCAGGCC
TTTCATTAGGTGAGTCATTGACTTGATGGGCCTTTATATGTTTTAAGACT
CAATAACTTCAAACTTTGTATTCAAACGCATGTACTCAAGTTGGGTACAA
AACAGGACCTAGGTCTAGGTTTACATTATATGGGAATATTAAACTCCGTG
GTCTTTTCAATTGATAAACAAGAAAGCTTAAGCAGAGTCGCCATAAAACT
TAATTTACAGGAGTGAATTTTTCCGATACATAGAGCAACTCAAGTCGGTC
AAGCAAAAAAGAATTAATTACTTTGATTGTTTTGAGATAAGTATCTGTTT
GAAAAAGAAAGATTTGACCATATCACTTGGAGGTATTAAAATTACATGTG
TTTTTTTCTTATGCATGCACACATTTTTAGCCTGGATATGTCAATTGATA
ATTGCACACATAGGCCCTAACACAGTCTAATCTTTTCAACCAGTTGTGTT
TTAATGGCCCATTCCGCTGCAAACTGGGTCAATAATATTTAAAAGGTGTA
TTTTTATAATTATCAGGTTGAACCATACCGCCAACATTTTCTTTGTTGTG
TCTGTAACAAAATTATTACACGGTTTATCGAATGTTTGAGCCATTGTAAT
TCTTCAAAGCACAAGAAAGAAGTAGTAAGTCATTTGTTTCTTCTGTTCTC
CTACTTCTGAATATGGAAGCTACTTGATGTAGGCGATGTGTTTTCCATCT
CATTTTTTCTCAAAAATTGTACTTGAAATTGACACTACAGAGGGTAATTG
AGGGGCCCCCCCCCCCCAGTCGACCCTCAATTCAGGTATTCACCCCAAAA
TTTTGCCAATTCACGTATCCACGCGCGAAAAAACCATTTTCACGTTCACG
TGCCAATTTTGCTTTTACATCTTTGGTTAAAATGATTGTGACCTTATTTG
GCTAAATATGACCTCTTTACTTTATGGTTCACACTTCTTTGTCAAACAAC
TATTTGAAATTGGCCATACTCACTTGAAAGGGGGCTCTTTTCGTGACTTG
TTGTTTTATTTAAAGGTTTACCACAAAATTGACCATATTATTATGATAAA
ATTACCTAAAATAACAAAAATAATAGTTGCTTAAAGTAATGCATTTGGAA
TAACAGCATTATATTTTGTCTATAATAGACTAACTTGGTATTCGCATAGA
TTGTCCACATTTTCTACCTTTTTAAGAAAGGTTAACCACAATTTGAACCC
TACTAATTCATACCTCTATCTTTGAAGATCCAATTTCCAAAGGAGGTCCT
ATAAATTAACCGATGTCCGTTCGTTCGTCCGTCTGTTACCAGCTTTTCTC
AGGATTGGCTCATTAGTTTTTTCTGATTTTGGGCACAACGATGCAAAATG
GCAATGCCCAAAATGTGAAAGAGCCCGATTTTGGAGAAAAAAAAATTTTC
GGGCCGAAAATGCCGGAAATATGCTGGAAAAATTGTTTTTTTGACATTTT
CTCGAGATTTTATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTA
TTAACAATGCTCAGAACATGGGCGAGTACGATTTTTTAGGAAAAAAATTT
TTCCGGCTGAAAATGCCGGAAATATGCCGGAAATCACCCTTTTTCTGGAT
TTTCATTAGACTTTTTCCTTACAATTGGTTGTTTTTTCATTCAAAAAACA
TTATTAATAGCAATGCCCACCATAAAACATGTTTCAATTTTCAATAAAAT
TGATTATCGAAGCCGGAACTATTAAAAAATCACCGTAACAACCTATTTTC
GCCGGAAAGACAGTATTTCTTGAATTTCTCAAGCTGTACTTGATATTTTT
TTATGAAATTTTGCACACTGATGCAAAATGACAATGCCTAAAATGTGATG
GAGCCCGATTTTCGAAGAACATTTTTTTCCGGACGAAAATGCCGGAAATA
TGCCAGAAAAACCGGTTTTTTGACATTTTATCGAATTTTCATCCTTAGTT
TTTTCTGATTTTTTGCAGAAAGATGCGTATTCGCAATGCTCAAAACATAA
CGGAGTTCGATTTTTGAGAAAAAAATTTTCGGTCAAAAATGCCGGAAATT
TCTGTTTTTGCTGATTTTCATTGGATTTTTTCGTTTTATGTCTTTGTTTT
TTTCAAACAAAATTATTATTTATAAGAATGTCCACGATTAAGCATGGTTC
AACTTTCAATGAAACTGATTTTGGTACAGGAACTTTCTAAAAATCGCCAG
AACAGCCGAGAATTGCCGGATTTCTTAAATTTCTCGAGTTGTTCTTGTAT
TATTCTGCATTTTCATACTATTGTTGTCATTTTTCAATTGTCTTATTACA
TGGGGCCCCCCAGGGGTTTGCGTGAATGCGTGAAAATTGAAAAGAAATTG
CGTGAATGCGTGAATTGAAAAAACTTGCGTGAACGTGAAAATCCACTTTT
TGATTGCGTGAATGCGTGAATGTGGGCTATTTTGTGCGTGAATACGTGAA
TTTCCCCTTTTTTCAACCAATTATGGGTACTTTTCCCGATTTTTCAATGT
TTCCCCGATTTTTCCCCGAAAATTTCCCGATTTTCTGAAAAATCGGATTA
TTGCGTGAAACTCGAGGAAAAATTGCATGATTGCGTGAATTGAGGGTCCG
CTGGGGGGCCTCTTACATCGATCTTCAGGTAGGTCCATTCAGCATGTAGC
TTGTTAATTTCATTGTTGCAAACTGCGTGTACCAAATTGACATAAATGTG
TAAAAATTGGAACCTTCTCCTTTCTGTTTTAGGCTGGCAAATGGCGAAAG
TTACAATCATTTGCATGCCAAAAATGTCACACTCAAGCACAGCTTTCAAA
CTTCACAGCTTTTTGTCAGTGGACTGTTTTGAAAAACAATCAAGCCTTAA
CGAAAGAAGATCATAACATAAGACTTGAAATTCTCAAGAGGGTTGGAAAG
ACACTTCACAATGCTGGGCTGAAAGGTAAGTAATTTCAGCTCTGTTTATT
TGAATAAATTTTGAAATTAATATAAATATGAGCACTGGTAATGTCACCCA
AAAAGGTGAAAAATTTTGGAAAAAATAAAGTTTTGAATTTCAGTTTTATT
CCTGGATAATTTTTTTATTAATGACCTCAATTTTCAGAAAACATAAGTAT
CAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGGACACAAAAAAATTGAAA
AAAAGCAAGGAAATGCATGGTTTTTACAAATGTAACTCTTTAGTATTGTC
AAGGTGTTAGCATAACTGCTAAAGAGGGTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TAAAGAGGGTTAAAAATCTGATAAATACTTTAAATAGTTATGTCCGCAAC
ATACAATTTGCTACAGAATATGACTCTGTTTTGAACTATTGGAGCAATTC
TAACCAGACTGTAAGTGAATGTGTAGTAGGTTATGTTGTGTGAATACTAC
AAAATGAATTTAACATGCAAATTAATGCATGATTTATCCTTTATTCAAGC
TCGTAGGCTCAGAACCATCATTTTCAAAGAAATAAAAAGGTTATTTTTCT
GTTAAAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNGCGTACTTTGTAAAGTGAAAAAAATGACTATTTAAG
CTTGCCAGTATCAAGACTGATAAAAAACATCAGCTTGTATCATTATTACA
TGCACCTAGATTTTTCACTGGGGCCTTAAAGTTGAAAAGTTGACAAAACC
GAAAATGGGTGACATTAGCAGACTCATGCTCATATGCAAACAAATCTCTT
GGAAAATTCATCCAAATGGTTCCTTTTAGAATGATACAGATGATTCAGGG
CTAAACCTAAAAAAAAATTCATTTAAATGTGAATGAATCTGATTTTCAGT
GTCATCAATCGTTAAGAGATGGATGTGTTTTGTTTGATTTAGGTTTTTGT
TTACACATTTCTAATGCATGCCTTCATATGCTGCACTCTATACTTTGATG
AAGTTACTCAAATTTTCTTCAAAATTAGCTTGACAATGCTGCTTCTTTAT
TCCTTTCCATCAAAGGTGCATCAGTTTCTCTTTACGGATCATCAGACACT
CTTCTTGGTTTCAAATATTCTGATGTCAACCTCCACATCACACTGAAGCA
TTTTAATGTAAGCCCCATGAGAATTTCTACTCGTCAATTATTATCCAGAG
TTTTGGTTGGGTTTAAACAGATCTGAGCTTGGTTTAATTTCCCTTCATTT
TGGCATTTCTACATATAATTTAGAGCATTTTGTTACCAGTTCATTCAGTT
GCTCTGTGACACTATCATGAGTAACTGCTATTTCGGGAAAATCTTTGTCA
CACCACCACCACCAGAACTTACTTCACAGTGGAGTACCTGTTTTCAGTGC
TCGAAAAAGGATACACCATCCCATAAAATGGTCAATTTGCACATTTTCTA
GATTAAGTTATATTCCTCAACATTTTTGTTTGATTTTTGTATTTTAAGAA
GAACTGTGTTGGAATAAGTTTTATTGGTTTAAGTGACTATCAAAGCATTT
ACAAAAGTTTTCTTCCTAGACTTGAAAGAAAGATTTTAATCAAGAAATAA
AAATTTTACATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTGAAACTA
ATTTTCTCGAAATCTAAAAATTTTAAAAGAGCCATTCCTATTTCATTAGA
AAGAAAAAAGATAGACTTAAATTCTGATGGGTCATTTATTAAATTCGATC
ATTATATCAAAATTTATGCTCAGTTGAATAAAAAAGTTACTTTCAGAAAG
TGCTCGAAAACGTTAGAAATCAACCTATCCTATGTATCCTAACTTGTGCA
TTAAAAATGTGTTTTAAATGTAAGTGTCATAGTGTTCACGTACCTACTGC
ATGACCCCTTGTTATTTATTATAAACATTCATTGCTTTGTTTTGTTACAA
GAAATTCTATTAGCTTACCTAGAAAAATCCATTTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033838XLOC_033838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053647-exon-scaffold_233-1575043694:253703..253734TCONS_00053647-exon-scaffold_233-1575043694:253703..253734Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1575043694:251354..251417TCONS_00053647-exon-scaffold_233-1575043694:251354..251417Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1575043694:250661..250768TCONS_00053647-exon-scaffold_233-1575043694:250661..250768Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1575043694:248360..248552TCONS_00053647-exon-scaffold_233-1575043694:248360..248552Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1575043694:244130..244219TCONS_00053647-exon-scaffold_233-1575043694:244130..244219Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1575043694:243296..243296TCONS_00053647-exon-scaffold_233-1575043694:243296..243296Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1510915933:253703..253734TCONS_00053647-exon-scaffold_233-1510915933:253703..253734Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1510915933:251354..251417TCONS_00053647-exon-scaffold_233-1510915933:251354..251417Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1510915933:250661..250768TCONS_00053647-exon-scaffold_233-1510915933:250661..250768Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1510915933:248360..248552TCONS_00053647-exon-scaffold_233-1510915933:248360..248552Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1510915933:244130..244219TCONS_00053647-exon-scaffold_233-1510915933:244130..244219Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1510915933:243296..243296TCONS_00053647-exon-scaffold_233-1510915933:243296..243296Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1491911889:253703..253734TCONS_00053647-exon-scaffold_233-1491911889:253703..253734Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1491911889:251354..251417TCONS_00053647-exon-scaffold_233-1491911889:251354..251417Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1491911889:250661..250768TCONS_00053647-exon-scaffold_233-1491911889:250661..250768Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1491911889:248360..248552TCONS_00053647-exon-scaffold_233-1491911889:248360..248552Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1491911889:244130..244219TCONS_00053647-exon-scaffold_233-1491911889:244130..244219Clytia hemisphaericaexon
TCONS_00053647-exon-scaffold_233-1491911889:243296..243296TCONS_00053647-exon-scaffold_233-1491911889:243296..243296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:243296..253734 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.723718	0.423573	1.51108	0.367992	12.0722	2.46527	3.29653	6.04311	0	0	0	0	0	0	1.39267	0.63991	1.32385	4.2483	0.465198	1.1059	0	0.30025	0	0	0.521691	0	0	0	0.989349	1.91694
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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