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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053650 ID=TCONS_00053650|Name=TCONS_00053650|organism=Clytia hemisphaerica|type=transcript|length=3650bpRun BLAST on NCBI protein sequence of TCONS_00053650-protein >TCONS_00053650-protein ID=TCONS_00053650-protein|Name=TCONS_00053650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=805bp MYIFIKTLIFLFTCTQAINAIDFVQKYTLSNVDKINGKDCEKWTWKTDAPRun BLAST on NCBI transcript from alignment at scaffold_233:269686..315348- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053650 ID=TCONS_00053650|Name=TCONS_00053650|organism=Clytia hemisphaerica|type=transcript|length=45663bp|location=Sequence derived from alignment at scaffold_233:269686..315348- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:269686..315348- >TCONS_00053650 ID=TCONS_00053650|Name=TCONS_00053650|organism=Clytia hemisphaerica|type=CDS|length=19344bp|location=Sequence derived from alignment at scaffold_233:269686..315348- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053650 vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 1.602e-18 Identity = 64/201 (31.84%), Postives = 105/201 (52.24%), Query Frame = 3
Query: 1902 RKVTSLIMATSLYNKSISNTKEKIKITFKLKTMGEAKNALCTYWQEDKDTEKPGFWSPRGCIKSNIITTENEEIYVVCSCTHLTNFAVLFNVYDAKVGAIKSNT-ALNIISFIGCVVSMVCLIATLICYLGLRDIRRRTARKIXXXXXXXXXXXXXXXX--XGIEQTARPHVCHAVSALIHMFTLSTFFWMSVQAVFLYLS 2495
+ + S +MA S+ N +I N K+ ++I K E + +C +W +K+ G W+ GC+ +++ VC C H T+F VL ++ + NT L IS+IGC +S + ATL+ Y+ +RR KIL+N +LLFL F+ I +C AV+ L+H F L+TF WM ++A+ +Y++
Sbjct: 763 KTLVSYVMACSIGNITIQNLKDPVQIKIKHTRTQEVHHPICAFWDLNKNKSFGG-WNTSGCVAHR----DSDASETVCLCNHFTHFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLLTYVAFEKLRRDYPSKILMNLSTALLFLNLLFLLDGWITSFNVDGLCIAVAVLLHFFLLATFTWMGLEAIHMYIA 958 The following BLAST results are available for this feature:
BLAST of TCONS_00053650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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