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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053705 ID=TCONS_00053705|Name=TCONS_00053705|organism=Clytia hemisphaerica|type=transcript|length=4733bpRun BLAST on NCBI protein sequence of TCONS_00053705-protein >TCONS_00053705-protein ID=TCONS_00053705-protein|Name=TCONS_00053705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1183bp NATTTIKPLTNGTENATTTNKPLTNGTENATTTIKPSTNATENATTTIEPRun BLAST on NCBI transcript from alignment at scaffold_233:1374104..1393507- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053705 ID=TCONS_00053705|Name=TCONS_00053705|organism=Clytia hemisphaerica|type=transcript|length=19404bp|location=Sequence derived from alignment at scaffold_233:1374104..1393507- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:1374104..1393507- >TCONS_00053705 ID=TCONS_00053705|Name=TCONS_00053705|organism=Clytia hemisphaerica|type=CDS|length=46176bp|location=Sequence derived from alignment at scaffold_233:1374104..1393507- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053705 vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 4.844e-42 Identity = 145/461 (31.45%), Postives = 235/461 (50.98%), Query Frame = 2
Query: 1949 ILGSLINNKTLATAKIPKEAFKNKSRIVYALLFNNDALFQTENQTIAVQSGQPILSPISSKILAVTVGKEKVV-NLSNPILLKFKKMDIGVTKDERKIYKYSCVFWDTQKETPPKSTNGPPKSTNGFWSSRGCWKVNETQSDIT-CECNHLTNFAILLDV---TGKQSNPLELRIITWIGCGISXXXXXXXXXXYSIFKKLRAKLPPKXXXXXXXXXXXXXXVFLVGAERGSVVRSKLGCQIVAGI-LHYFMLTTFLWMLIEAINLYRNFVKIFRSGGDGKFFKNSSRIAWGVPLLIVVINGAVKPGSLG----NDQFCVILGNSFYXXXXXXXXXXXFINFIVLIMVLRSLSKNQGSALLLPVALILFINLIVLIMVLGSLSKNQGSKITSTQKQSLATQTRITLACATLLGLTWLFAILAVGDLSYTFQLLFTIFNSLQGFFIFVFYTLRNQDVRNEWK 3301
IL S+ K+L T +IP N I++ F +LF+T+N T A +++ +++ ++ + + NL++P+++ + IG ++ +++ C FWD + NG G W+S GC KV ET + T C+C+HLT+F +L+D+ T N L +IT+ GCGIS + L + ++TY F KLR P KIL++L ++L +L +VFL+ + S K+G I A + LHYF+L +F WM +EA+++Y VK+F K + WG+P ++V I +VK G FC I +S + +I+ + LI +NL + VL L+ + S+I T+++ + + T++ LLGLTW FA A G + F LF IFN+LQGFFIFVF+ + + VR +W+
Sbjct: 2603 ILASIYLPKSL-TERIP---LSNLQTILFNF-FGQTSLFKTKNVTKA----------LTTYVVSASISDDMFIQNLADPVVITLQH--IGGNQNYGQVH---CAFWDFENN------NG-----LGGWNSSGC-KVKETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSF--QKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIPNYILKF-CLVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIF-----------YISVVAYF------------------CLIFLMNLSMFCTVLVQLNSVK-SQIQKTRRKMILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQWQ 2998 The following BLAST results are available for this feature:
BLAST of TCONS_00053705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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