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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053706 ID=TCONS_00053706|Name=TCONS_00053706|organism=Clytia hemisphaerica|type=transcript|length=2266bp GTCATTGCTCTTGGATTTTGACAAAAGTCAGGCGATTTTTCTTCAATCTA ATTATCATGATATCTTAtgttttagttgtttttggacttgcagtggtAAC TGGAGTCCCAACAACAACAGTCAACCATGAGGTGTCAACAACGACTGTCA TCACTTCAACCATCACTAATCGAACCACGTCTATACAAACAATCACTTCG TCAGATAATCAACCAAATGAAATTATTTCTAGTTCAGGTGATCTTGTGGT ATTCAACAATTCCACTTACTTCTTTGGAACATCACATAAAAATTGGCATA ATGCAGAGAAAGATTGTGTTTCACGTGGTGGACATCTTACAAGTATTCAC TCGCATGAAGAAAAcgaatttctgaaaaaagaattgaaatcgaGAGGCTA TTTATCCTATGTCTGGATTGGTGGTGGTCAACAGAAGGATAACGCCTGGT CATGGACAAATAACTCAACAAAGAACTTTTCTCTCGTTAACACCTGCCAG AAACCAATACCAAGCAACAAATGTTTTTCAATGTATCATGTAAGTTTCCA TTGGGAGCGTATTCCTTGTGCAACTGCTGTATCGTTTTATATCTGTAAAT TGGACGTTAGTAACTGGGCTCAATTGCCACAAATGATAACCACCAACCCT ACAACAGAACCTTTATCGACAATTTCAACCATTCAAACCTCTCTGTCACC AAATGATAACGCGACAACAACAAATAAACCTTTAACAAATGGAACAGAAA ACGCGACAACAACAATTAAACCTTTAACAAATGCAACAGATAACGGGACA ACAACAATCGAACCTTCGACAAATGCAACAGATAACGCGACAACAACAAT TAAACCTTCAACAAATGCAACAGATAACGCGACAACAACAATTAAACCTT TAACAAATGGAACAGATAACGCGACAACAACAATCGAACCTTCAACAAAT GCAACAATCGAACCTTCAACAAATGCAACAGATAACGCGACAACAACAAT TAAACTTTCAACAAATGCAACAGATAACGGGACAACAACAATTAAACCTT CAACAAATGCAACAGAGGACGCGACAACGACAATTAAACCTTCAACAAAT GCAACAGATAACGCGACAACAACAATTAAACCTTTAACAAATGGAACAGA AAACGCGACAACGACAATTAAACCTTCAACAAATGCAACAGATAACGCAA CAACAACAATCGAACCTTCGACAAATACAACAGATAACGCGACAACAACA ATTAAACCTTTAACAAATCCAACAGATAACGCGACAACAACAATCGAACC TTCAACAAATGCAACATATAACACGACAACAACAATTAAACCTTTAACAA ATGCAACAGATAACGCGACAACAACAATCGAACCTTCAACAAATGCAACA GATAACGCGACAACAACAATGAAACCTGCAACAAATGCAACAGATAACGC AACAACGACAATCGAACCTTCAACAAATACAACAGATAACGCGACAACAA CAATCGAACCTTCAACAAATGCAACAGATAACGCGACAACAACAATTAAA CCTTTAACAAGTGCAACAGATAACGCGACAGCAACAATCGAACCTTCAAC AAATGCAACATATAACACGACAACAACAATTAAATCTTTAACAAATGCAA CAGATAACGCGACAACAACAATCGAACCTTCAACAAATGCAACAGATAAC GCGACAACAAAAATGAAACCTGCAACAAATGCAACAGAAAACGCGACAAC AACAAATAAACCTTTAACAAATGGAACAGAAAACGCGACAACAACAATTA AACCTTTAACAAATGCAACAGATAACGCGACAACGACAATTAAACCTTCA ACAAATGCAACAGAAAACGCGACAACAACAAATAAACCTTTAACAAATGG AACAGAAAACGCGACAACAACAATTAAACCTTTAACAAATGCAACAGATA ACGCGACAACGACAATTAAACCTTCAACAAATGCAACAGATAACGCGACA ACAACAATCGAACCTGCAACAAATGCAACAGAAAACGCGACAACAACAAA TAAACCTTTAACAAATGGAACAGAAAACGCGACAACAACAATTAAACCTT TAACAAATGCAACAGATAACGCGACAACGACAATTAAACCTTCAACAAAT ACAACAGATAACGCGACAACAACAATGAAACCTGCAACAAATGCAACAGA AAACGCGACAACAACAAATAAACCTTTAACAAATGGAACAGAAAACGCGA CAACAACAAATAAACC Run BLAST on NCBI transcript from alignment at scaffold_233:1393736..1401362- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053706 ID=TCONS_00053706|Name=TCONS_00053706|organism=Clytia hemisphaerica|type=transcript|length=7627bp|location=Sequence derived from alignment at scaffold_233:1393736..1401362- (Clytia hemisphaerica) GTCATTGCTCTTGGATTTTGACAAAAGTCAGGCGATTTTTCTTCAATCTA
ATTATCATGATATCTTATGTTTTAGTTGTTTTTGGACTTGCAGGTAAAAT
TTATTTCAAGTTATATACACGTTTTGTTATAATAACATCCGAAAGCATTT
AGTTTTAAGCCTAAAAATGTTCTTTCTTTTTCACCATTTGTCAATGTTTT
AAGTGATTACCTAAGGAATTTGATGTTTTAGAGTCCATTAAGATTCAAAA
TTTTCTTAAAGTTGTTCTTATAAAGTTTGCTCTTATAAAAAACGTGTTGT
CTTTGATTTGAAAACTGCTTGTTTGAAACATCTTCACTTTTTCACATCAC
CTTGTGTTTACCCAGCTGGCACAACTTTTTTTCGACGTTTATCTAACGTT
CCCAACGTCCGTAATACGTTAGATGAACACGTTGAAACAACGTTTTGTGC
CTGCTGGGCAACAACTCTTAAGCTAGTCCAAAAATCATTGTCCGTTCAAT
GTGATACATTATACTCTTGCAAGCGTATGATAAAAAGTAATACCTCGTTG
GAACGATTATTTTGAGCGGATTATTTTAAGGTTATTTAAATGTAAGGCTT
TTATTTAAGAAAAAAATGAAGATGAATTTTTTTTTTTTCTGAATTTAAAT
CGGTAAAATGGAGGAGTGTAATTTTTTTGTCCCAAGAAAGATAAATAAAC
AAATCTGAATATACAAATTCAAATCAAATTTGAAAAGTGTAAATTCAAGT
TCATAGCATTTTTGTCATTTCGATAGTTTAAAGCCTGCAAAGCCTTTAAA
TGTTCTTAACTTGTTCTTAAGATGTTTGGCTATTGAAGCCTGTTTTTATA
TAGTTTGTTCTTATAAAAAACGTGCATCGTTCCAACTAGGTGTTACTTTT
TTTTTCCTTCAAAAAGTGTCGATTTTTTTGAATTACCAAAAAGGTGTTCT
TTTTGATTGAAACTGGTAAATGTCACGAAAAACAGGGAGTTTCTAAACAT
CGACCAGAAATGGCGACCACGACCAGCGACCACGACCGGCGACCAGATAA
ATTTGGGTTATGAGTTTATCTAGAATACTAAAAAGTGACCTTTGAAGTAA
CCAGTCATTTTCTTGACAAAGTGACACGATTTGACAAAAATATTGACAGA
GCCATTAAGTATGATGTCTCAATCAGTTGTTACACTGAATTTTTTGATTA
TGCTGAATGGGATGCCTTTAGTATGAAAAGATATAACTTGCCAGTAGGAA
AAAATTGGAAAGGCTAGTTTTAGAGATATGAATCGAATCAATTATTCTAT
TGTCTTTATGCTGACAAAATGAATAATTTCGACAGAAATAACAATCTGAT
GATGAAATACAAAGCTTCTCAAACCAATTTCAAAAAATTTTATGTCGCTA
ATTATTTTGATGCTGATAATACAAAAGGATAGGAATTGACACCATAATCA
AGCTCCAAGAGCGTCGAAATGGTTGTTTTACGTATATGGAATGTGGCTCT
AAATAGATGAGATGGGGTGAGCTTACTCTTCAATATGATATATTCAAATG
ATAGGGAGAGACACTCTACGTTGGTGAAAGAGAAAAAACTTGATAATCCA
AACTTCGCTGGTCGTGGTCGCCATTTCTGGTCGATGTTTAGAAACTCCCC
GAAAAACATCATTACTCTTTATAAATTTTGGCTGAGGCTCGATTGCTCTT
ATTTTTTCGTGATTCCCAGACTTAAATGCTCTGAAATGTCATTAAAAATT
AGATTAGTTCGTTAGATTGTTTTTAATTCGTTTATAAATTTACTTTTGCC
AAAATTGGGCCTCATATTCTTATAAAAGAGCTTATATTTCAAATTTTAGT
GGTAACTGGAGTCCCAACAACAACAGTCAACCATGAGGTGTCAACAACGA
CTGTCATCACTTCAACCATCACTAATCGAACCACGTCTATACAAACAATC
ACTTCGTCAGATAATCAACCAAATGAAATTATTTCTAGTTCAGGTATCTA
TCAGTGCATTCCATGTCAAAGACCAGTTGCCCCCACTGCTCCACTGGAAA
ATTCGGCCAAAATTTCAGTCCACGGTGGGAAAATGTTCTACAATTTCAGC
CCTGCTGGCAAATTGACTTTGTTTTTATCTCCATTTATAATTCAATGGAA
AAAATTGCACTCCAAACCATGCTTTATTGGATTATCGAGCTGGAAGCAAT
AGAACTTCTATCAACAGAAATCGATAGAAATTTTCATCCGCTTTACATAC
AGGGTGGCTCAAAAAAGTGATGGTTTGATGTAAAACCCATTTCATTGATT
CACCTAAGATTGGTATAGTCTTAGAACCTTTATAAGGGATCGGGGTCGTG
GTCGGTCGTATTATAGTATCACAATGGGGTGACATCGATGGACGATCTCA
TATGTACATCAGAACCGAATTCTTGTACTAGAAATTTTATTTGTGCTAGC
CTTTGTTATATTTTTTATATATTCTCAAGAAATTTTTCTAGCTCAAAATT
TCCGAGGTATTATTGATACAAACCATAAGCCTCGAAGTAAGGAAAATAGT
CTTATATGAAAGCTAAAACTATTTAGTTTAGAACATGGTTAAATTCTTAT
TCAAAGGTGATCTTGTGGTATTCAACAATTCCACTTACTTCTTTGGAACA
TCACATAAAAATTGGCATAATGCAGAGAAAGATTGTGTTTCACGTGGTGG
ACATCTTACAAGTATTCACTCGCATGAAGAAAACGAATTTCTACTAAATG
AAGCAATTACAAGGTAAATTTCGAAAATTTGATTTTATTTAGTTATAATT
TAATTTTTTATAAATTTTTTATTTGCTGATAAGATCGAGGCAACGCCATG
TAATTTCTATTGACAACAAACAAAGTTTTTCATTCAATTTTCAGAAATAT
TGGCTTTTACTGGGTTGGTGGAGAGAGAAAGGGCAACGAATTTTTCTGGT
CAGATGGGACAGAGAGAGACTATCATTTTTGGCCAAAAACAGAGCCTAAT
AATCTTTGTGGGGTTGAAAATTGTGCTGAGATAAGATTACGCCGGATGGG
TAACGATGCACGTTGCAATGAAAAGCGGTCCTATGTTTGTAAAATCAACA
GTAAGTTTGTTTATTTTTAATTCGCACCAACCTTTAAAACATATCACAAC
CAGACTAGATTTAACTCCCTAAAAATAATTAAACTTATGGCCTTCTTTCT
AACTGGACTTTTTCAGCTTGAAAGAATGGAACCTGAAATTTCCATCAAAA
TAAGAAATTTTCCTACATCATTTACATTTGTCTCCTTCATTTTATCCTCA
CTGGTTAGAAAATTATTACCTGTCCACCTAAGAGTGGACGCGACCTTTCA
AAACCTTCGTTATACATCTAATAAGTCTAATTTTAGTTATGCTTAGTAGT
TTAAGTTTAAGTTTTATTACTACTTTACCATTTCAAAATTACAGAAACAA
ACATGAAAGCGCTATCAATCGTAAACATAGCAACTGTTACCAAGGCTACC
TCCGATAACACTGTCACCTTGACGACAACATCAACTACTGTATCAACACA
GATTTACCCCGAAAGTTTCTTTTCAGAATCAAGTAAGTTTCCTGTAGCCT
TGCCAGTCGTGATTTCTACTTTTGAATAATCGTTAATTTTCTCTGGAAAT
TTCCCCCAGGGAAAAGTGCCCGATTCAAAACGACCATACGTGCGGCCCAA
AATTTGGCCTTTGAAAACGGACCCTTACAGTGATGAGAAAATTTTGCAAA
ATTTGTGCAAATTTGAGCGAAAAATCGACCCTCACGGTGCATTTTCTTGC
AATTACCATTTCAGGCAAAATATGGTTGGATTTTCGAACTTTTACACCCA
TAGAGTGTAATTTTTCTCATCTTTGCTCATTTTGACCCTTACAGTGCACT
TTGAGAAGCTTGGGAAATATACCCTTAAGAGCCGCACGTATGGTAGGTCA
TTTACCTTGGGTGCTCCCCCCGGAAATTTCCTACATTTGTATTGAGAAAG
TCCAGACGACCACCGATGTTCAAGTTTTATGGAAAAATCAATCTTAAACA
CTGATTTTCTTCTACAAAAATCTTTTCGCTCTCTTTCCCTCAAATAACTG
GACACCCCTGCTTCAGTGACCTGGTGACATTTTAAAACGCACCGAGGTGA
CTATGAAAATAGTAAAATTTCACCCGGTCTGGAATTTATTACCAGGTTGA
CTTACATGATGTAATTAATGATCGGGGTATTACCATAAATTTCTAAATAC
CAAGGAGCAAAATTTTGATTGATTTTGACGGGGTTCATTGTTATTCCAAT
GGGCCTTAAAATTAAGCCATTTTTTGAAATGTTCTCACCGGGTCATCCAC
TGGAGCGGGTCATTGATACAGGGGTGTTTTATACTACAGGTGGAATACAA
AACAAAGTGACTTACTACTTTGGAAAATCACGTAAAAATTGGCATGATGC
AGAGAAAGATTGTGTTTCACGCGGCGGACATCTTACAAGTATTCACTCGC
ATGAAGAAAACGAATTTCTGAAAAAAGAATTGAAATCGAGGTACAACTTC
ATTCCTCTTTTGGGAATATTAATTTTCTCATTTCATTTCACCAAATCTCT
ATCAAAAAATGGAGTTTCTAAACATCGACCAGAAATGGCGACCACGACCA
GCGACCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGAAATTCATTTAGGAAGCTTTATATT
TGATCATCAGATCATTATTTTGTCAAAATAAGTCATTTTGACAATGTAAG
GACAATAGAATAATTGATGAGATTGATACCTCTAAAACTGCCCTTCCCAG
CTTTTGCCTACTGACAATTTCTGTCTATTCATACTAAAGACATCTCATTC
AGCATAATTAAAATATTTGGTGTAATAAAGTTTACAGGCATCACACTTAA
TTGCCCTGTCGATATTTTTGTCAAAAAGTGTCACTTTGTCTAGAAAATGA
CTGGTAATGTCAAAGGTCACTTTTAGTATTCTAAGCTAGAGTAATTCTCA
GCCACGTGCTCAGTGGTTTATTTGAAAGCCACATCAGGACTCGATTTGGA
TATTCTCTACGGTGGAGAGAGCAGATAAACATCAAAAAATGTGGTTTTAT
CAAGAACAATTCAACGAAAAAAAAATGCTTCTGTATTATTAACCTGAATA
GATAGTATGGCTTAATTTCATATCAATCGCTACGGTTCCCATGGATTTAT
ATAATTTAATCGATTTTTATGTTGAAGAAAAAAATCTCCCACATGCTTCT
TTTAGAGGCTATTTATCCTATGTCTGGATTGGTGGTGGTCAACAGAAGGA
TAACGCCTGGTCATGGACAAATAACTCAACAAAGAACTTTTCTCTCGTTA
ACACCTGCCAGAAACCAATACCAAGCAACAAATGTTTTTCAATGTATCAT
GTAAGTTTCCATTGGGAGCGTATTCCTTGTGCAACTGCTGTATCGTTTTA
TATCTGTAAATTGGACGTTAGTAACTGGGCTCAATTGCCACAAATGATAA
CCACCAACCCTACAACAGAACCTTTATCGACAATTTCAACCATTCAAACC
TCTCTGTCACCAAATGATAACGCGACAACAACAAATAAACCTTTAACAAA
TGGAACAGAAAACGCGACAACAACAATTAAACCTTTAACAAATGCAACAG
ATAACGGGACAACAACAATCGAACCTTCGACAAATGCAACAGATAACGCG
ACAACAACAATTAAACCTTCAACAAATGCAACAGATAACGCGACAACAAC
AATTAAACCTTTAACAAATGGAACAGATAACGCGACAACAACAATCGAAC
CTTCAACAAATGCAACAATCGAACCTTCAACAAATGCAACAGATAACGCG
ACAACAACAATTAAACTTTCAACAAATGCAACAGATAACGGGACAACAAC
AATTAAACCTTCAACAAATGCAACAGAGGACGCGACAACGACAATTAAAC
CTTCAACAAATGCAACAGATAACGCGACAACAACAATTAAACCTTTAACA
AATGGAACAGAAAACGCGACAACGACAATTAAACCTTCAACAAATGCAAC
AGATAACGCAACAACAACAATCGAACCTTCGACAAATACAACAGATAACG
CGACAACAACAATTAAACCTTTAACAAATCCAACAGATAACGCGACAACA
ACAATCGAACCTTCAACAAATGCAACATATAACACGACAACAACAATTAA
ACCTTTAACAAATGCAACAGATAACGCGACAACAACAATCGAACCTTCAA
CAAATGCAACAGATAACGCGACAACAACAATGAAACCTGCAACAAATGCA
ACAGATAACGCAACAACGACAATCGAACCTTCAACAAATACAACAGATAA
CGCGACAACAACAATCGAACCTTCAACAAATGCAACAGATAACGCGACAA
CAACAATTAAACCTTTAACAAGTGCAACAGATAACGCGACAGCAACAATC
GAACCTTCAACAAATGCAACATATAACACGACAACAACAATTAAATCTTT
AACAAATGCAACAGATAACGCGACAACAACAATCGAACCTTCAACAAATG
CAACAGATAACGCGACAACAAAAATGAAACCTGCAACAAATGCAACAGAA
AACGCGACAACAACAAATAAACCTTTAACAAATGGAACAGAAAACGCGAC
AACAACAATTAAACCTTTAACAAATGCAACAGATAACGCGACAACGACAA
TTAAACCTTCAACAAATGCAACAGAAAACGCGACAACAACAAATAAACCT
TTAACAAATGGAACAGAAAACGCGACAACAACAATTAAACCTTTAACAAA
TGCAACAGATAACGCGACAACGACAATTAAACCTTCAACAAATGCAACAG
ATAACGCGACAACAACAATCGAACCTGCAACAAATGCAACAGAAAACGCG
ACAACAACAAATAAACCTTTAACAAATGGAACAGAAAACGCGACAACAAC
AATTAAACCTTTAACAAATGCAACAGATAACGCGACAACGACAATTAAAC
CTTCAACAAATACAACAGATAACGCGACAACAACAATGAAACCTGCAACA
AATGCAACAGAAAACGCGACAACAACAAATAAACCTTTAACAAATGGAAC
AGAAAACGCGACAACAACAAATAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053706-exon-scaffold_233-1575043694:1401270..1401362 | TCONS_00053706-exon-scaffold_233-1575043694:1401270..1401362 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1575043694:1399370..1399513 | TCONS_00053706-exon-scaffold_233-1575043694:1399370..1399513 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1575043694:1398661..1398756 | TCONS_00053706-exon-scaffold_233-1575043694:1398661..1398756 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1575043694:1396823..1396883 | TCONS_00053706-exon-scaffold_233-1575043694:1396823..1396883 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1575043694:1393736..1395607 | TCONS_00053706-exon-scaffold_233-1575043694:1393736..1395607 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1510915933:1401270..1401362 | TCONS_00053706-exon-scaffold_233-1510915933:1401270..1401362 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1510915933:1399370..1399513 | TCONS_00053706-exon-scaffold_233-1510915933:1399370..1399513 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1510915933:1398661..1398756 | TCONS_00053706-exon-scaffold_233-1510915933:1398661..1398756 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1510915933:1396823..1396883 | TCONS_00053706-exon-scaffold_233-1510915933:1396823..1396883 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1510915933:1393736..1395607 | TCONS_00053706-exon-scaffold_233-1510915933:1393736..1395607 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1491911889:1401270..1401362 | TCONS_00053706-exon-scaffold_233-1491911889:1401270..1401362 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1491911889:1399370..1399513 | TCONS_00053706-exon-scaffold_233-1491911889:1399370..1399513 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1491911889:1398661..1398756 | TCONS_00053706-exon-scaffold_233-1491911889:1398661..1398756 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1491911889:1396823..1396883 | TCONS_00053706-exon-scaffold_233-1491911889:1396823..1396883 | Clytia hemisphaerica | exon |
TCONS_00053706-exon-scaffold_233-1491911889:1393736..1395607 | TCONS_00053706-exon-scaffold_233-1491911889:1393736..1395607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_233 | supercontig | scaffold_233:1393736..1401362 - |
Blast
The following BLAST results are available for this feature:
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