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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053708 ID=TCONS_00053708|Name=TCONS_00053708|organism=Clytia hemisphaerica|type=transcript|length=1477bpRun BLAST on NCBI transcript from alignment at scaffold_233:1418984..1462943- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053708 ID=TCONS_00053708|Name=TCONS_00053708|organism=Clytia hemisphaerica|type=transcript|length=43960bp|location=Sequence derived from alignment at scaffold_233:1418984..1462943- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053708 vs. Swiss-Prot (Human)
Match: HPF1 (Histone PARylation factor 1 OS=Homo sapiens GN=HPF1 PE=1 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 2.222e-51 Identity = 98/261 (37.55%), Postives = 147/261 (56.32%), Query Frame = 3
Query: 336 LLFPDDFFWFYSFIK-----NQADGFLEDLELQLTGPYHMLNGNIKKDTDLSSTKLNLHGRYFVDTPEVNTVLYSTQDSDDLHIAYYRDSPTELPSLMVCCKNNQSGELNQYGDNIFGAISLYIKEKLKRTKDKSKTQKLKTHLEAIEKQAEKHGLSLEANPPSLKKRAKLTVTKSFNKVGLVVPLDDSGVGYREIRHSDKELKKVLTRIVDATNNDDEDTRNKYLDELQETITFIQFANDECDYGMGLEFGNEGSISNAH 1103
L P+DF+ F+ F + +D L LQL GPY +L G K + NLH R++ D PE T++ + H+ Y+RDSP E P + + ++ + GDN+F A+ L++ +KL+ DK K LK E + + A + G SLE +K+R K VTK+F+ GLVVP+D + VGYRE+ +D +LK++ IV+A ++++ R K +QE +TF+QFANDECDYGMGLE G + +H
Sbjct: 47 LSLPEDFYHFWKFCEELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIIIGDNKTQ-YHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLREITDKKKINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKTIVEAASDEE---RLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSH 303 The following BLAST results are available for this feature:
BLAST of TCONS_00053708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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