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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053709 ID=TCONS_00053709|Name=TCONS_00053709|organism=Clytia hemisphaerica|type=transcript|length=2662bpRun BLAST on NCBI protein sequence of TCONS_00053709-protein >TCONS_00053709-protein ID=TCONS_00053709-protein|Name=TCONS_00053709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp MAATRKGAKGKQPEKSQKSKARKRNFDQEDRDEKASAAPQEKKQNFLDECRun BLAST on NCBI transcript from alignment at scaffold_233:1436215..1462870- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053709 ID=TCONS_00053709|Name=TCONS_00053709|organism=Clytia hemisphaerica|type=transcript|length=26656bp|location=Sequence derived from alignment at scaffold_233:1436215..1462870- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:1436215..1462870- >TCONS_00053709 ID=TCONS_00053709|Name=TCONS_00053709|organism=Clytia hemisphaerica|type=CDS|length=21735bp|location=Sequence derived from alignment at scaffold_233:1436215..1462870- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00053709 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 3.364e-56 Identity = 138/414 (33.33%), Postives = 217/414 (52.42%), Query Frame = 2
Query: 1142 DEEARQPLVGNQESEGGGGDTYESAGTTQESGADAAIXXXXXXXXXXXXLTTVCETFWNICNTIQGLPILAIPYTFKSGGWYSLITLLIVALASNYTSNILVKSLYEV-RDGVKVRVRNSYLDIGEA-----FWKSGGKMLVLIIMVIELVFVSTMYPILVGAMFSKSFPDAPIPVWAWTLIGGIALLPNTLLKNLSQVAWXXXXXXXXXXXXXXXXXXYSFTRYDEWDIEYMNNF-HASEFPAALGILVACYLAQPFVPFIESTMKKPEKFAPTMNYSFLAMTTLNIIVGFLADVTFYPDTDEVVTNNLPEGILRQLINAMAAILAFTSYTLPMFTSFDILEKS-----NLPCLPIGF-GDKIYTCRVQTLRLFLVLITILMGAFIPRFTYLLAVVGSITGITLEFVFPALFH 2344
DE A P+ G+ + G G +G+ + + G + T E WN+ N IQG+ +L +PY GG+ L ++ A+ YT IL+ LYE DG VRVR+SY+ I A F GG+ +V + +IELV +Y ++ G + SFP P+ +W++I LLP LKNL V+ S++ ++ FVI I ++AY +R +W E + + +FP ++GI+V Y +Q F+P +E M++P +F MN++ +A L + +A +T+ +T EV+T+NLP G +R ++N A SY LP F + ++LEKS + P + GD TLR LV+ T+LM ++P F L+ + GS+TG L F+ P+LFH
Sbjct: 72 DEGAEAPVEGDIHYQRGSGAPLPPSGSKDQ------VGGGGEFGGHDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIANACCAPRFPTLGGR-VVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLP-GSIRAVVNIFLVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFH 477 The following BLAST results are available for this feature:
BLAST of TCONS_00053709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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