TCONS_00053711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053711
Unique NameTCONS_00053711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053711 ID=TCONS_00053711|Name=TCONS_00053711|organism=Clytia hemisphaerica|type=transcript|length=2040bp
GGCtgagttttgatatttcttaataAATTTCGGTCAGTATAAAAAGTTCt
ctgtaaaaagaaaatattaaaaaaatataatacatCGTATGACACATCTT
GTAGAACAATAAAAATCTAATGCAGCTAGTTATTACAAATAGAACTTTTG
ACAATTTTCTCAAATAGAAGATTCATTAGGGACTGGACTTccaaccctag
attttggaggtggttCGGTTGGTCGGTTggttgggaaattttttttattt
tggtcattcATGGAATTTTTGTCTACATTTTGTAATTTGACGAAATAGCA
ATCAAAGTTTTTAGGACGGCAAGTTTAGAGAAGAGTCTGTTGGCTGACag
caaaccaacatttttttaGTCCAGCCTCATAAAGGTATTACATTCGGCAG
TAGCACGCAAAATTGCTATTTGATGGCTCGCTGCTTGATTGTCAACGACT
AAACAGAAAGCCCCTATTTTGGATAAATAGCTAAGAAAAAGAGAGCCTTT
GGCGTTGGATCACCCTTAATTGCTGTTCCAAACTTGCTACaggccaaaaa
aaattatacaataaaaaaaaacataatggtatggtatgaaaataaattat
aaaaataaatttgtttccTAATGCTATATTTTATCAAACTTAAATTAAAA
TCAACAGCATGCATTTGGCATGGTCAAGTCTCTCCAGGCATTTTGAAGAG
AACTGGTCTATATTGTCTCCTATGATCCTTGATTCGTTTTAAACAATCCC
CTTTTTCAGGGTTACAAACTAGAGTACCTACAAACCCAAATATGATCCAA
TCACATGGTTTCACATTGGAATATTCTAATATAAAAGGTACAAGACGGCT
CAAATCTGACATTTGATATAATTTACCAAAACATTCATGTTTTGTGAAAC
TTAGTTCATACCATGGCTCATTCATGGATGCTCGCTTGATGGCAAAATCT
CGAACTTTTGTTGAATACCCAGGCTCAGCTCTTTGTTTAGCACTTAGACG
AACATAGAATGCACCTTTCAAAGCAGCATACATCATAAGAAAGACTGAAT
CCAaacttgatttcaaattttcaatattcaccTTAGGTTCTGCACCAAAC
GTTCCAACAATATCATCAAATTTGGGGTAATAATTTTTTGGTGGTATTAT
AATATCTAGTAATTTGGATTTCACATATGAGTCATATTTTTGCAGTAACC
TTGAAGTTGCATCTTCAGAATTGCGTTCAAGATTTACGTAAACTACAAAT
AAACAATCTTGTTTTGCTTTctcatccaaattttgaaataaagaatCAAG
CAATCCAATTAAATCCTCAACATCACCAAAAGAGTGAATTCCAACTCCAT
AGATTATAGTACGCGGGTCTGTATTATTAGTgtataattttgataatttg
aaaTGATCTTCATTAATTTGTGGTAGAAATCTGTGTAAAGAGGGAAGCGT
TAAAGCTGTATCACCAAATCTTTTGATATGATTACTAAACTCTTTCTTCT
GCATACGTTTATGAAATTTTAAGAGATGCTGCTGTAATAAAGTTGATCTA
AATTTCTCTTGTACTAGTCTCCATTTTAAAACTTTCAGCTGATCATACAG
ATCTGTAGGGACAGTGGGTTTGATCTTGTCCAAGCGTTGTTTGTATTCTG
TATTTTCAAGTGCTTTCTGATATAGAACAATGTAGGAAGTATACACCAGA
ATGAATGCAATGATAAAAGATATCCAGTATCTTCTAACATAATTCCAGCA
CATTTCAACAACTTCTCTCCaagttatatttttcaaaatttatcattaac
atttttttaaattttgcattTTATAGCTTGGTGTTTATCTATAcctagaa
ataaaaaagataagTATAAGTATAGTACAGTAAATATAGAGTATTCTTTT
TAACATACAGTAAGTCTATTTAACTTGAGCTTTAAATAAGATTTCCCTTT
CAAAGTTCTTCCCTGTTCAGTTGAGAGTTATAAGAAATACTTAAGAAAGA
ATGAACAGTTGAATAGATGATCTATTTTCTAAATCAAATC
Run BLAST on NCBI

protein sequence of TCONS_00053711-protein

>TCONS_00053711-protein ID=TCONS_00053711-protein|Name=TCONS_00053711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MCWNYVRRYWISFIIAFILVYTSYIVLYQKALENTEYKQRLDKIKPTVPT
DLYDQLKVLKWRLVQEKFRSTLLQQHLLKFHKRMQKKEFSNHIKRFGDTA
LTLPSLHRFLPQINEDHFKLSKLYTNNTDPRTIIYGVGIHSFGDVEDLIG
LLDSLFQNLDEKAKQDCLFVVYVNLERNSEDATSRLLQKYDSYVKSKLLD
IIIPPKNYYPKFDDIVGTFGAEPKVNIENLKSSLDSVFLMMYAALKGAFY
VRLSAKQRAEPGYSTKVRDFAIKRASMNEPWYELSFTKHECFGKLYQMSD
LSRLVPFILEYSNVKPCDWIIFGFVGTLVCNPEKGDCLKRIKDHRRQYRP
VLFKMPGET
Run BLAST on NCBI

transcript from alignment at scaffold_233:12860..14899

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053711 ID=TCONS_00053711|Name=TCONS_00053711|organism=Clytia hemisphaerica|type=transcript|length=2040bp|location=Sequence derived from alignment at scaffold_233:12860..14899 (Clytia hemisphaerica)
GATTTGATTTAGAAAATAGATCATCTATTCAACTGTTCATTCTTTCTTAA
GTATTTCTTATAACTCTCAACTGAACAGGGAAGAACTTTGAAAGGGAAAT
CTTATTTAAAGCTCAAGTTAAATAGACTTACTGTATGTTAAAAAGAATAC
TCTATATTTACTGTACTATACTTATActtatcttttttatttctaggTAT
AGATAAACACCAAGCTATAAaatgcaaaatttaaaaaaatgttaatgata
aattttgaaaaatataacttGGAGAGAAGTTGTTGAAATGTGCTGGAATT
ATGTTAGAAGATACTGGATATCTTTTATCATTGCATTCATTCTGGTGTAT
ACTTCCTACATTGTTCTATATCAGAAAGCACTTGAAAATACAGAATACAA
ACAACGCTTGGACAAGATCAAACCCACTGTCCCTACAGATCTGTATGATC
AGCTGAAAGTTTTAAAATGGAGACTAGTACAAGAGAAATTTAGATCAACT
TTATTACAGCAGCATCTCTTAAAATTTCATAAACGTATGCAGAAGAAAGA
GTTTAGTAATCATATCAAAAGATTTGGTGATACAGCTTTAACGCTTCCCT
CTTTACACAGATTTCTACCACAAATTAATGAAGATCAtttcaaattatca
aaattatacACTAATAATACAGACCCGCGTACTATAATCTATGGAGTTGG
AATTCACTCTTTTGGTGATGTTGAGGATTTAATTGGATTGCTTGattctt
tatttcaaaatttggatgagAAAGCAAAACAAGATTGTTTATTTGTAGTT
TACGTAAATCTTGAACGCAATTCTGAAGATGCAACTTCAAGGTTACTGCA
AAAATATGACTCATATGTGAAATCCAAATTACTAGATATTATAATACCAC
CAAAAAATTATTACCCCAAATTTGATGATATTGTTGGAACGTTTGGTGCA
GAACCTAAggtgaatattgaaaatttgaaatcaagttTGGATTCAGTCTT
TCTTATGATGTATGCTGCTTTGAAAGGTGCATTCTATGTTCGTCTAAGTG
CTAAACAAAGAGCTGAGCCTGGGTATTCAACAAAAGTTCGAGATTTTGCC
ATCAAGCGAGCATCCATGAATGAGCCATGGTATGAACTAAGTTTCACAAA
ACATGAATGTTTTGGTAAATTATATCAAATGTCAGATTTGAGCCGTCTTG
TACCTTTTATATTAGAATATTCCAATGTGAAACCATGTGATTGGATCATA
TTTGGGTTTGTAGGTACTCTAGTTTGTAACCCTGAAAAAGGGGATTGTTT
AAAACGAATCAAGGATCATAGGAGACAATATAGACCAGTTCTCTTCAAAA
TGCCTGGAGAGACTTGACCATGCCAAATGCATGCTGTTGATTTTAATTTA
AGTTTGATAAAATATAGCATTAggaaacaaatttatttttataatttatt
ttcataccataccattatgtttttttttattgtataattttttttggcct
GTAGCAAGTTTGGAACAGCAATTAAGGGTGATCCAACGCCAAAGGCTCTC
TTTTTCTTAGCTATTTATCCAAAATAGGGGCTTTCTGTTTAGTCGTTGAC
AATCAAGCAGCGAGCCATCAAATAGCAATTTTGCGTGCTACTGCCGAATG
TAATACCTTTATGAGGCTGGACtaaaaaaatgttggtttgctGTCAGCCA
ACAGACTCTTCTCTAAACTTGCCGTCCTAAAAACTTTGATTGCTATTTCG
TCAAATTACAAAATGTAGACAAAAATTCCATgaatgaccaaaataaaaaa
aatttcccaaccAACCGACCAACCGaaccacctccaaaatctagggttgg
AAGTCCAGTCCCTAATGAATCTTCTATTTGAGAAAATTGTCAAAAGTTCT
ATTTGTAATAACTAGCTGCATTAGATTTTTATTGTTCTACAAGATGTGTC
ATACGatgtattatatttttttaatattttctttttacagaGAACTTTTT
ATACTGACCGAAATTtattaagaaatatcaaaactcaGCC

Coding sequence (CDS) from alignment at scaffold_233:12860..14899

>TCONS_00053711 ID=TCONS_00053711|Name=TCONS_00053711|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_233:12860..14899 (Clytia hemisphaerica)
ATGTGCTGGAATTATGTTAGAAGATACTGGATATCTTTTATCATTGCATT
CATTCTGGTGTATACTTCCTACATTGTTCTATATCAGAAAGCACTTGAAA
ATACAGAATACAAACAACGCTTGGACAAGATCAAACCCACTGTCCCTACA
GATCTGTATGATCAGCTGAAAGTTTTAAAATGGAGACTAGTACAAGAGAA
ATTTAGATCAACTTTATTACAGCAGCATCTCTTAAAATTTCATAAACGTA
TGCAGAAGAAAGAGTTTAGTAATCATATCAAAAGATTTGGTGATACAGCT
TTAACGCTTCCCTCTTTACACAGATTTCTACCACAAATTAATGAAGATCA
tttcaaattatcaaaattatacACTAATAATACAGACCCGCGTACTATAA
TCTATGGAGTTGGAATTCACTCTTTTGGTGATGTTGAGGATTTAATTGGA
TTGCTTGattctttatttcaaaatttggatgagAAAGCAAAACAAGATTG
TTTATTTGTAGTTTACGTAAATCTTGAACGCAATTCTGAAGATGCAACTT
CAAGGTTACTGCAAAAATATGACTCATATGTGAAATCCAAATTACTAGAT
ATTATAATACCACCAAAAAATTATTACCCCAAATTTGATGATATTGTTGG
AACGTTTGGTGCAGAACCTAAggtgaatattgaaaatttgaaatcaagtt
TGGATTCAGTCTTTCTTATGATGTATGCTGCTTTGAAAGGTGCATTCTAT
GTTCGTCTAAGTGCTAAACAAAGAGCTGAGCCTGGGTATTCAACAAAAGT
TCGAGATTTTGCCATCAAGCGAGCATCCATGAATGAGCCATGGTATGAAC
TAAGTTTCACAAAACATGAATGTTTTGGTAAATTATATCAAATGTCAGAT
TTGAGCCGTCTTGTACCTTTTATATTAGAATATTCCAATGTGAAACCATG
TGATTGGATCATATTTGGGTTTGTAGGTACTCTAGTTTGTAACCCTGAAA
AAGGGGATTGTTTAAAACGAATCAAGGATCATAGGAGACAATATAGACCA
GTTCTCTTCAAAATGCCTGGAGAGACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033874XLOC_033874Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053711-proteinTCONS_00053711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053711-exon-scaffold_233-1491911889:12860..14899TCONS_00053711-exon-scaffold_233-1491911889:12860..14899Clytia hemisphaericaexon
TCONS_00053711-exon-scaffold_233-1510915933:12860..14899TCONS_00053711-exon-scaffold_233-1510915933:12860..14899Clytia hemisphaericaexon
TCONS_00053711-exon-scaffold_233-1575043694:12860..14899TCONS_00053711-exon-scaffold_233-1575043694:12860..14899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:12860..14899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.14555	8.65382	3.31274	2.40392	16.2266	9.53727	10.7367	11.5675	5.66579	5.46068	3.9065	4.16813	2.92523	2.71669	3.75183	3.15254	5.23642	4.44233	3.069	2.64753	6.51942	6.7685	22.8825	19.5919	3.07889	5.03151	6.96096	4.87701	13.8499	15.8637
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006759Glyco_transf_54
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016758transferase activity, transferring hexosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
Blast
[Close]
BLAST of TCONS_00053711 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.675e-30
Identity = 93/326 (28.53%), Postives = 161/326 (49.39%), Query Frame = -3 
Query:  683 LYDQLKVLKWRLVQEKFRSTLLQQHLLKFHKRMQKKEFS-NHIKRFGDTALTL------------PSLHRFLPQI--NEDHFKLSKLYTNNTDPRTIIYGVGIHSFGDVEDLIGLLDSLFQNLDEKAKQDCLFVVYVNLERNSE---DATSRLLQKYDSYVKSKLLDIIIPPKNYYPKFDDIVGTFGAEPKVNIENLKSSLDSVFLMMYAALKGAFYVRLSAKQRAEPGYSTKVRDFAIKRASMNEPWYELSFTKHECFGKLYQMSDLSRLVPFILEYSNVKPCDWIIFGFVGTLVCNPEKG--DCLKRIKDHRRQYRPVLFKMPG 1600
            L ++L++ + R+ Q   RS+ L   + +F +   +   S + + +F D  L L            PS++  LP +  NE   + +    N     +I+ G+          LI  L SL  NL  + K DC+ VV++  E + +      + L +++   + S L+++I PP++YYP   ++  TFG   +      K +LD  FLMMYA  KG +Y++L      +  Y   +++FA++ +S  E W  L F++    GK++Q  DL+ +V FI  +   KP DW++   +   VCNPEK    C ++  + R ++RP LF+  G
Sbjct:   44 LKERLRIAEHRISQ---RSSELNTIVQQFKRVGAETNGSKDALNKFSDNTLKLLKELTSKKSLQVPSIYYHLPHLLKNEGSLQPAVQIGNGRTGVSIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIG-ETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSS--EEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVG 363
The following BLAST results are available for this feature:
BLAST of TCONS_00053711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGT4A7.675e-3028.53Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]
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